cmd.read_pdbstr("""\ ATOM 6 N ASN D 2 -8.610 4.624 24.231 1.00 0.74 \ ATOM 7 CA ASN D 2 -7.939 3.325 24.575 1.00 0.74 \ ATOM 8 C ASN D 2 -7.974 3.082 26.086 1.00 0.74 \ ATOM 9 O ASN D 2 -7.178 3.651 26.842 1.00 0.74 \ ATOM 10 CB ASN D 2 -6.500 3.277 24.048 1.00 0.74 \ ATOM 11 CG ASN D 2 -5.876 1.901 24.194 1.00 0.74 \ ATOM 12 OD1 ASN D 2 -5.882 1.321 25.280 1.00 0.74 \ ATOM 13 ND2 ASN D 2 -5.341 1.369 23.100 1.00 0.74 \ ATOM 14 N LEU D 3 -8.898 2.220 26.509 1.00 0.74 \ ATOM 15 CA LEU D 3 -9.203 2.021 27.928 1.00 0.74 \ ATOM 16 C LEU D 3 -8.013 1.552 28.773 1.00 0.74 \ ATOM 17 O LEU D 3 -7.619 2.251 29.695 1.00 0.74 \ ATOM 18 CB LEU D 3 -10.384 1.054 28.083 1.00 0.74 \ ATOM 19 CG LEU D 3 -10.896 0.745 29.493 1.00 0.74 \ ATOM 20 CD1 LEU D 3 -11.183 2.003 30.297 1.00 0.74 \ ATOM 21 CD2 LEU D 3 -12.144 -0.118 29.398 1.00 0.74 \ ATOM 22 N HIS D 4 -7.438 0.387 28.472 1.00 -0.67 \ ATOM 23 CA HIS D 4 -6.365 -0.168 29.317 1.00 -0.67 \ ATOM 24 C HIS D 4 -5.219 0.824 29.548 1.00 -0.67 \ ATOM 25 O HIS D 4 -4.657 0.859 30.640 1.00 -0.67 \ ATOM 26 CB HIS D 4 -5.830 -1.506 28.772 1.00 -0.67 \ ATOM 27 CG HIS D 4 -4.643 -2.036 29.524 1.00 -0.67 \ ATOM 28 ND1 HIS D 4 -3.632 -2.750 28.916 1.00 -0.67 \ ATOM 29 CD2 HIS D 4 -4.295 -1.932 30.830 1.00 -0.67 \ ATOM 30 CE1 HIS D 4 -2.719 -3.072 29.816 1.00 -0.67 \ ATOM 31 NE2 HIS D 4 -3.095 -2.583 30.984 1.00 -0.67 \ ATOM 32 N PHE D 5 -4.878 1.631 28.541 1.00 -1.50 \ ATOM 33 CA PHE D 5 -3.933 2.734 28.751 1.00 -1.50 \ ATOM 34 C PHE D 5 -4.497 3.677 29.810 1.00 -1.50 \ ATOM 35 O PHE D 5 -3.807 4.027 30.768 1.00 -1.50 \ ATOM 36 CB PHE D 5 -3.653 3.510 27.455 1.00 -1.50 \ ATOM 37 CG PHE D 5 -2.717 4.686 27.638 1.00 -1.50 \ ATOM 38 CD1 PHE D 5 -1.338 4.494 27.697 1.00 -1.50 \ ATOM 39 CD2 PHE D 5 -3.216 5.985 27.757 1.00 -1.50 \ ATOM 40 CE1 PHE D 5 -0.478 5.569 27.869 1.00 -1.50 \ ATOM 41 CE2 PHE D 5 -2.360 7.061 27.930 1.00 -1.50 \ ATOM 42 CZ PHE D 5 -0.990 6.854 27.986 1.00 -1.50 \ ATOM 43 N CYS D 6 -5.756 4.074 29.635 1.00 0.74 \ ATOM 44 CA CYS D 6 -6.436 4.954 30.586 1.00 0.74 \ ATOM 45 C CYS D 6 -6.476 4.377 32.007 1.00 0.74 \ ATOM 46 O CYS D 6 -6.158 5.078 32.963 1.00 0.74 \ ATOM 47 CB CYS D 6 -7.859 5.266 30.114 1.00 0.74 \ ATOM 48 SG CYS D 6 -8.724 6.427 31.186 1.00 0.74 \ ATOM 49 N GLN D 7 -6.870 3.110 32.135 1.00 -0.64 \ ATOM 50 CA GLN D 7 -6.825 2.397 33.419 1.00 -0.64 \ ATOM 51 C GLN D 7 -5.397 2.386 33.948 1.00 -0.64 \ ATOM 52 O GLN D 7 -5.141 2.747 35.093 1.00 -0.64 \ ATOM 53 CB GLN D 7 -7.307 0.951 33.260 1.00 -0.64 \ ATOM 54 CG GLN D 7 -8.780 0.792 32.909 1.00 -0.64 \ ATOM 55 CD GLN D 7 -9.182 -0.660 32.712 1.00 -0.64 \ ATOM 56 OE1 GLN D 7 -8.350 -1.515 32.405 1.00 -0.64 \ ATOM 57 NE2 GLN D 7 -10.466 -0.944 32.887 1.00 -0.64 \ ATOM 58 N LEU D 8 -4.475 1.979 33.081 1.00 0.74 \ ATOM 59 CA LEU D 8 -3.054 1.867 33.409 1.00 0.74 \ ATOM 60 C LEU D 8 -2.449 3.215 33.845 1.00 0.74 \ ATOM 61 O LEU D 8 -1.633 3.261 34.767 1.00 0.74 \ ATOM 62 CB LEU D 8 -2.299 1.272 32.205 1.00 0.74 \ ATOM 63 CG LEU D 8 -0.825 0.873 32.309 1.00 0.74 \ ATOM 64 CD1 LEU D 8 -0.583 -0.144 33.412 1.00 0.74 \ ATOM 65 CD2 LEU D 8 -0.362 0.314 30.973 1.00 0.74 \ ATOM 66 N ARG D 9 -2.882 4.302 33.202 1.00 -0.67 \ ATOM 67 CA ARG D 9 -2.383 5.661 33.485 1.00 -0.67 \ ATOM 68 C ARG D 9 -2.903 6.252 34.796 1.00 -0.67 \ ATOM 69 O ARG D 9 -2.167 6.957 35.493 1.00 -0.67 \ ATOM 70 CB ARG D 9 -2.747 6.619 32.337 1.00 -0.67 \ ATOM 71 CG ARG D 9 -2.292 8.060 32.550 1.00 -0.67 \ ATOM 72 CD ARG D 9 -2.477 8.918 31.307 1.00 -0.67 \ ATOM 73 NE ARG D 9 -1.879 10.245 31.470 1.00 -0.67 \ ATOM 74 CZ ARG D 9 -2.438 11.266 32.122 1.00 -0.67 \ ATOM 75 NH1 ARG D 9 -3.633 11.141 32.694 1.00 -0.67 \ ATOM 76 NH2 ARG D 9 -1.793 12.427 32.206 1.00 -0.67 \ ATOM 77 N CYS D 10 -4.175 6.004 35.104 1.00 0.74 \ ATOM 78 CA CYS D 10 -4.783 6.513 36.331 1.00 0.74 \ ATOM 79 C CYS D 10 -4.320 5.704 37.536 1.00 0.74 \ ATOM 80 O CYS D 10 -4.273 6.228 38.643 1.00 0.74 \ ATOM 81 CB CYS D 10 -6.311 6.492 36.248 1.00 0.74 \ ATOM 82 SG CYS D 10 -7.025 7.530 34.951 1.00 0.74 \ ATOM 83 N LYS D 11 -3.976 4.435 37.314 1.00 -0.67 \ ATOM 84 CA LYS D 11 -3.443 3.558 38.367 1.00 -0.67 \ ATOM 85 C LYS D 11 -2.109 4.053 38.933 1.00 -0.67 \ ATOM 86 O LYS D 11 -1.777 3.768 40.087 1.00 -0.67 \ ATOM 87 CB LYS D 11 -3.287 2.123 37.846 1.00 -0.67 \ ATOM 88 CG LYS D 11 -4.596 1.346 37.782 1.00 -0.67 \ ATOM 89 CD LYS D 11 -4.446 0.040 37.018 1.00 -0.67 \ ATOM 90 CE LYS D 11 -5.792 -0.629 36.796 1.00 -0.67 \ ATOM 91 NZ LYS D 11 -5.663 -1.917 36.059 1.00 -0.67 \ ATOM 92 N SER D 12 -1.353 4.790 38.122 1.00 0.74 \ ATOM 93 CA SER D 12 -0.151 5.482 38.585 1.00 0.74 \ ATOM 94 C SER D 12 -0.483 6.473 39.706 1.00 0.74 \ ATOM 95 O SER D 12 0.344 6.735 40.579 1.00 0.74 \ ATOM 96 CB SER D 12 0.518 6.218 37.423 1.00 0.74 \ ATOM 97 OG SER D 12 1.705 6.863 37.845 1.00 0.74 \ ATOM 98 N LEU D 13 -1.694 7.024 39.662 1.00 0.74 \ ATOM 99 CA LEU D 13 -2.208 7.897 40.722 1.00 0.74 \ ATOM 100 C LEU D 13 -2.922 7.112 41.837 1.00 0.74 \ ATOM 101 O LEU D 13 -3.159 7.651 42.919 1.00 0.74 \ ATOM 102 CB LEU D 13 -3.165 8.951 40.133 1.00 0.74 \ ATOM 103 CG LEU D 13 -2.577 10.199 39.454 1.00 0.74 \ ATOM 104 CD1 LEU D 13 -1.726 9.881 38.230 1.00 0.74 \ ATOM 105 CD2 LEU D 13 -3.710 11.141 39.070 1.00 0.74 \ ATOM 106 N GLY D 14 -3.262 5.851 41.569 1.00 0.74 \ ATOM 107 CA GLY D 14 -3.990 5.010 42.519 1.00 0.74 \ ATOM 108 C GLY D 14 -5.491 5.125 42.333 1.00 0.74 \ ATOM 109 O GLY D 14 -6.261 4.795 43.233 1.00 0.74 \ ATOM 110 N LEU D 15 -5.897 5.599 41.156 1.00 0.74 \ ATOM 111 CA LEU D 15 -7.301 5.804 40.811 1.00 0.74 \ ATOM 112 C LEU D 15 -7.712 4.792 39.744 1.00 0.74 \ ATOM 113 O LEU D 15 -6.860 4.161 39.107 1.00 0.74 \ ATOM 114 CB LEU D 15 -7.514 7.231 40.277 1.00 0.74 \ ATOM 115 CG LEU D 15 -6.914 8.402 41.069 1.00 0.74 \ ATOM 116 CD1 LEU D 15 -7.045 9.702 40.284 1.00 0.74 \ ATOM 117 CD2 LEU D 15 -7.573 8.528 42.434 1.00 0.74 \ ATOM 118 N LEU D 16 -9.019 4.633 39.562 1.00 0.74 \ ATOM 119 CA LEU D 16 -9.555 3.796 38.488 1.00 0.74 \ ATOM 120 C LEU D 16 -9.630 4.604 37.182 1.00 0.74 \ ATOM 121 O LEU D 16 -9.608 5.837 37.204 1.00 0.74 \ ATOM 122 CB LEU D 16 -10.937 3.233 38.856 1.00 0.74 \ ATOM 123 CG LEU D 16 -11.083 2.106 39.898 1.00 0.74 \ ATOM 124 CD1 LEU D 16 -10.524 2.434 41.278 1.00 0.74 \ ATOM 125 CD2 LEU D 16 -12.553 1.731 40.017 1.00 0.74 \ ATOM 126 N GLY D 17 -9.712 3.902 36.051 1.00 0.74 \ ATOM 127 CA GLY D 17 -9.747 4.541 34.730 1.00 0.74 \ ATOM 128 C GLY D 17 -11.085 4.398 34.030 1.00 0.74 \ ATOM 129 O GLY D 17 -11.669 3.312 34.020 1.00 0.74 \ ATOM 130 N ARG D 18 -11.558 5.495 33.435 1.00 -0.63 \ ATOM 131 CA ARG D 18 -12.853 5.532 32.749 1.00 -0.63 \ ATOM 132 C ARG D 18 -12.777 6.275 31.416 1.00 -0.63 \ ATOM 133 O ARG D 18 -12.215 7.370 31.333 1.00 -0.63 \ ATOM 134 CB ARG D 18 -13.906 6.200 33.642 1.00 -0.63 \ ATOM 135 CG ARG D 18 -14.319 5.353 34.835 1.00 -0.63 \ ATOM 136 CD ARG D 18 -15.372 6.045 35.683 1.00 -0.63 \ ATOM 137 NE ARG D 18 -16.662 6.146 35.001 1.00 -0.63 \ ATOM 138 CZ ARG D 18 -17.211 7.272 34.538 1.00 -0.63 \ ATOM 139 NH1 ARG D 18 -16.606 8.451 34.669 1.00 -0.63 \ ATOM 140 NH2 ARG D 18 -18.393 7.218 33.937 1.00 -0.63 \ ATOM 141 N CYS D 19 -13.355 5.677 30.377 1.00 0.74 \ ATOM 142 CA CYS D 19 -13.473 6.340 29.082 1.00 0.74 \ ATOM 143 C CYS D 19 -14.619 7.346 29.122 1.00 0.74 \ ATOM 144 O CYS D 19 -15.761 6.991 29.429 1.00 0.74 \ ATOM 145 CB CYS D 19 -13.697 5.325 27.954 1.00 0.74 \ ATOM 146 SG CYS D 19 -12.221 4.391 27.497 1.00 0.74 \ ATOM 147 N ALA D 20 -14.290 8.604 28.834 1.00 -0.67 \ ATOM 148 CA ALA D 20 -15.273 9.676 28.691 1.00 -0.67 \ ATOM 149 C ALA D 20 -15.240 10.147 27.239 1.00 -0.67 \ ATOM 150 O ALA D 20 -14.628 11.176 26.923 1.00 -0.67 \ ATOM 151 CB ALA D 20 -14.950 10.818 29.640 1.00 -0.67 \ ATOM 159 N THR D 22 -13.582 9.707 23.709 1.00 -2.09 \ ATOM 160 CA THR D 22 -12.244 9.269 23.335 1.00 -2.09 \ ATOM 161 C THR D 22 -11.195 9.898 24.261 1.00 -2.09 \ ATOM 162 O THR D 22 -10.004 9.900 23.945 1.00 -2.09 \ ATOM 163 CB THR D 22 -11.920 9.608 21.863 1.00 -2.09 \ ATOM 164 OG1 THR D 22 -11.812 11.026 21.704 1.00 -2.09 \ ATOM 165 CG2 THR D 22 -13.002 9.075 20.924 1.00 -2.09 \ ATOM 166 N PHE D 23 -11.646 10.422 25.403 1.00 -2.08 \ ATOM 167 CA PHE D 23 -10.754 10.956 26.436 1.00 -2.08 \ ATOM 168 C PHE D 23 -10.693 10.038 27.654 1.00 -2.08 \ ATOM 169 O PHE D 23 -11.662 9.345 27.978 1.00 -2.08 \ ATOM 170 CB PHE D 23 -11.226 12.331 26.902 1.00 -2.08 \ ATOM 171 CG PHE D 23 -11.151 13.391 25.848 1.00 -2.08 \ ATOM 172 CD1 PHE D 23 -9.950 14.026 25.561 1.00 -2.08 \ ATOM 173 CD2 PHE D 23 -12.286 13.768 25.154 1.00 -2.08 \ ATOM 174 CE1 PHE D 23 -9.888 15.012 24.590 1.00 -2.08 \ ATOM 175 CE2 PHE D 23 -12.232 14.755 24.185 1.00 -2.08 \ ATOM 176 CZ PHE D 23 -11.030 15.378 23.903 1.00 -2.08 \ ATOM 177 N CYS D 24 -9.547 10.062 28.331 1.00 0.74 \ ATOM 178 CA CYS D 24 -9.342 9.308 29.564 1.00 0.74 \ ATOM 179 C CYS D 24 -9.760 10.138 30.780 1.00 0.74 \ ATOM 180 O CYS D 24 -9.495 11.340 30.836 1.00 0.74 \ ATOM 181 CB CYS D 24 -7.869 8.905 29.694 1.00 0.74 \ ATOM 182 SG CYS D 24 -7.466 8.026 31.218 1.00 0.74 \ ATOM 183 N ALA D 25 -10.410 9.487 31.744 1.00 -1.50 \ ATOM 184 CA ALA D 25 -10.781 10.112 33.020 1.00 -1.50 \ ATOM 185 C ALA D 25 -10.401 9.188 34.180 1.00 -1.50 \ ATOM 186 O ALA D 25 -10.305 7.971 34.003 1.00 -1.50 \ ATOM 187 CB ALA D 25 -12.271 10.412 33.048 1.00 -1.50 \ ATOM 188 N CYS D 26 -10.182 9.764 35.362 1.00 0.74 \ ATOM 189 CA CYS D 26 -9.792 8.974 36.534 1.00 0.74 \ ATOM 190 C CYS D 26 -10.763 9.126 37.702 1.00 0.74 \ ATOM 191 O CYS D 26 -10.967 10.228 38.208 1.00 0.74 \ ATOM 192 CB CYS D 26 -8.382 9.341 37.013 1.00 0.74 \ ATOM 193 SG CYS D 26 -7.097 9.407 35.740 1.00 0.74 \ ATOM 194 N VAL D 27 -11.365 8.008 38.108 1.00 0.74 \ ATOM 195 CA VAL D 27 -12.053 7.889 39.410 1.00 0.74 \ ATOM 196 C VAL D 27 -11.990 6.441 39.951 1.00 0.74 \ ATOM 197 O VAL D 27 -10.964 6.022 40.517 1.00 0.74 \ ATOM 198 CB VAL D 27 -13.532 8.383 39.368 1.00 0.74 \ ATOM 199 CG1 VAL D 27 -13.637 9.888 39.608 1.00 0.74 \ ATOM 200 CG2 VAL D 27 -14.203 7.995 38.067 1.00 0.74 \ """, "e4rfnD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4rfnD1_csv", state=0, origin=1) cmd.zoom("e4rfnD1_csv", animate=-1)