cmd.read_pdbstr("""\ ATOM 1 N MET a 1 -48.110 -4.160 78.452 1.00 -1.00 \ ATOM 2 CA MET a 1 -47.440 -4.682 79.640 1.00 -1.00 \ ATOM 3 C MET a 1 -47.998 -4.103 80.938 1.00 -1.00 \ ATOM 4 O MET a 1 -48.505 -2.974 80.957 1.00 -1.00 \ ATOM 5 CB MET a 1 -45.963 -4.379 79.566 1.00 -1.00 \ ATOM 6 CG MET a 1 -45.683 -2.911 79.695 1.00 -1.00 \ ATOM 7 SD MET a 1 -44.044 -2.517 79.101 1.00 -1.00 \ ATOM 8 CE MET a 1 -43.060 -3.513 80.230 1.00 -1.00 \ ATOM 9 N ARG a 2 -47.882 -4.881 82.014 1.00 0.39 \ ATOM 10 CA ARG a 2 -48.324 -4.464 83.343 1.00 0.39 \ ATOM 11 C ARG a 2 -47.855 -3.036 83.573 1.00 0.39 \ ATOM 12 O ARG a 2 -46.736 -2.694 83.221 1.00 0.39 \ ATOM 13 CB ARG a 2 -47.791 -5.441 84.417 1.00 0.39 \ ATOM 14 CG ARG a 2 -47.610 -4.876 85.837 1.00 0.39 \ ATOM 15 CD ARG a 2 -48.407 -5.629 86.922 1.00 0.39 \ ATOM 16 NE ARG a 2 -47.680 -6.731 87.558 1.00 0.39 \ ATOM 17 CZ ARG a 2 -47.509 -6.865 88.875 1.00 0.39 \ ATOM 18 NH1 ARG a 2 -47.999 -5.953 89.707 1.00 0.39 \ ATOM 19 NH2 ARG a 2 -46.846 -7.911 89.365 1.00 0.39 \ ATOM 20 N ALA a 3 -48.739 -2.190 84.090 1.00 0.39 \ ATOM 21 CA ALA a 3 -48.431 -0.788 84.335 1.00 0.39 \ ATOM 22 C ALA a 3 -47.099 -0.593 85.047 1.00 0.39 \ ATOM 23 O ALA a 3 -46.310 0.307 84.692 1.00 0.39 \ ATOM 24 CB ALA a 3 -49.527 -0.155 85.143 1.00 0.39 \ ATOM 25 N LYS a 4 -46.831 -1.440 86.038 1.00 0.39 \ ATOM 26 CA LYS a 4 -45.762 -1.140 86.974 1.00 0.39 \ ATOM 27 C LYS a 4 -44.423 -1.428 86.374 1.00 0.39 \ ATOM 28 O LYS a 4 -43.452 -0.788 86.708 1.00 0.39 \ ATOM 29 CB LYS a 4 -45.952 -1.908 88.276 1.00 0.39 \ ATOM 30 CG LYS a 4 -45.089 -3.093 88.447 1.00 0.39 \ ATOM 31 CD LYS a 4 -44.646 -3.188 89.864 1.00 0.39 \ ATOM 32 CE LYS a 4 -45.796 -3.480 90.753 1.00 0.39 \ ATOM 33 NZ LYS a 4 -45.459 -3.466 92.196 1.00 0.39 \ ATOM 34 N TRP a 5 -44.367 -2.389 85.469 1.00 0.39 \ ATOM 35 CA TRP a 5 -43.135 -2.690 84.774 1.00 0.39 \ ATOM 36 C TRP a 5 -42.881 -1.632 83.721 1.00 0.39 \ ATOM 37 O TRP a 5 -41.731 -1.378 83.320 1.00 0.39 \ ATOM 38 CB TRP a 5 -43.197 -4.055 84.113 1.00 0.39 \ ATOM 39 CG TRP a 5 -43.501 -5.228 84.995 1.00 0.39 \ ATOM 40 CD1 TRP a 5 -44.186 -6.331 84.622 1.00 0.39 \ ATOM 41 CD2 TRP a 5 -43.114 -5.441 86.370 1.00 0.39 \ ATOM 42 NE1 TRP a 5 -44.267 -7.211 85.661 1.00 0.39 \ ATOM 43 CE2 TRP a 5 -43.611 -6.692 86.746 1.00 0.39 \ ATOM 44 CE3 TRP a 5 -42.406 -4.694 87.316 1.00 0.39 \ ATOM 45 CZ2 TRP a 5 -43.428 -7.222 88.026 1.00 0.39 \ ATOM 46 CZ3 TRP a 5 -42.232 -5.230 88.598 1.00 0.39 \ ATOM 47 CH2 TRP a 5 -42.753 -6.469 88.933 1.00 0.39 \ ATOM 48 N ARG a 6 -43.962 -1.038 83.245 1.00 0.39 \ ATOM 49 CA ARG a 6 -43.844 0.036 82.289 1.00 0.39 \ ATOM 50 C ARG a 6 -43.332 1.282 83.013 1.00 0.39 \ ATOM 51 O ARG a 6 -42.488 2.009 82.503 1.00 0.39 \ ATOM 52 CB ARG a 6 -45.179 0.289 81.610 1.00 0.39 \ ATOM 53 CG ARG a 6 -45.220 1.571 80.853 1.00 0.39 \ ATOM 54 CD ARG a 6 -45.669 1.356 79.424 1.00 0.39 \ ATOM 55 NE ARG a 6 -46.250 2.592 78.901 1.00 0.39 \ ATOM 56 CZ ARG a 6 -45.550 3.612 78.385 1.00 0.39 \ ATOM 57 NH1 ARG a 6 -44.206 3.564 78.281 1.00 0.39 \ ATOM 58 NH2 ARG a 6 -46.205 4.694 77.959 1.00 0.39 \ ATOM 59 N LYS a 7 -43.842 1.509 84.216 1.00 0.39 \ ATOM 60 CA LYS a 7 -43.329 2.564 85.078 1.00 0.39 \ ATOM 61 C LYS a 7 -41.838 2.288 85.359 1.00 0.39 \ ATOM 62 O LYS a 7 -41.012 3.207 85.398 1.00 0.39 \ ATOM 63 CB LYS a 7 -44.146 2.621 86.369 1.00 0.39 \ ATOM 64 CG LYS a 7 -43.946 3.818 87.265 1.00 0.39 \ ATOM 65 CD LYS a 7 -44.355 3.377 88.650 1.00 0.39 \ ATOM 66 CE LYS a 7 -44.163 4.422 89.714 1.00 0.39 \ ATOM 67 NZ LYS a 7 -45.425 5.203 89.957 1.00 0.39 \ ATOM 68 N LYS a 8 -41.486 1.016 85.516 1.00 0.39 \ ATOM 69 CA LYS a 8 -40.097 0.675 85.732 1.00 0.39 \ ATOM 70 C LYS a 8 -39.305 0.866 84.448 1.00 0.39 \ ATOM 71 O LYS a 8 -38.177 1.305 84.504 1.00 0.39 \ ATOM 72 CB LYS a 8 -39.958 -0.752 86.246 1.00 0.39 \ ATOM 73 CG LYS a 8 -38.530 -1.150 86.544 1.00 0.39 \ ATOM 74 CD LYS a 8 -38.397 -2.624 86.802 1.00 0.39 \ ATOM 75 CE LYS a 8 -38.438 -2.920 88.277 1.00 0.39 \ ATOM 76 NZ LYS a 8 -37.120 -3.383 88.886 1.00 0.39 \ ATOM 77 N ARG a 9 -39.903 0.525 83.299 1.00 0.39 \ ATOM 78 CA ARG a 9 -39.293 0.744 81.986 1.00 0.39 \ ATOM 79 C ARG a 9 -38.834 2.160 81.866 1.00 0.39 \ ATOM 80 O ARG a 9 -37.691 2.413 81.474 1.00 0.39 \ ATOM 81 CB ARG a 9 -40.269 0.461 80.855 1.00 0.39 \ ATOM 82 CG ARG a 9 -39.706 -0.281 79.675 1.00 0.39 \ ATOM 83 CD ARG a 9 -40.256 0.232 78.352 1.00 0.39 \ ATOM 84 NE ARG a 9 -41.011 -0.701 77.472 1.00 0.39 \ ATOM 85 CZ ARG a 9 -40.723 -1.979 77.226 1.00 0.39 \ ATOM 86 NH1 ARG a 9 -39.710 -2.595 77.793 1.00 0.39 \ ATOM 87 NH2 ARG a 9 -41.456 -2.660 76.397 1.00 0.39 \ ATOM 88 N THR a 10 -39.709 3.107 82.202 1.00 -2.46 \ ATOM 89 CA THR a 10 -39.359 4.485 81.897 1.00 -2.46 \ ATOM 90 C THR a 10 -38.486 5.093 82.994 1.00 -2.46 \ ATOM 91 O THR a 10 -37.744 6.052 82.745 1.00 -2.46 \ ATOM 92 CB THR a 10 -40.595 5.349 81.636 1.00 -2.46 \ ATOM 93 OG1 THR a 10 -40.956 6.064 82.817 1.00 -2.46 \ ATOM 94 CG2 THR a 10 -41.742 4.496 81.126 1.00 -2.46 \ ATOM 95 N ARG a 11 -38.522 4.518 84.191 1.00 0.39 \ ATOM 96 CA ARG a 11 -37.576 4.963 85.204 1.00 0.39 \ ATOM 97 C ARG a 11 -36.164 4.679 84.702 1.00 0.39 \ ATOM 98 O ARG a 11 -35.306 5.560 84.705 1.00 0.39 \ ATOM 99 CB ARG a 11 -37.835 4.291 86.545 1.00 0.39 \ ATOM 100 CG ARG a 11 -38.474 5.207 87.536 1.00 0.39 \ ATOM 101 CD ARG a 11 -39.768 4.684 88.072 1.00 0.39 \ ATOM 102 NE ARG a 11 -40.420 5.718 88.874 1.00 0.39 \ ATOM 103 CZ ARG a 11 -40.965 5.523 90.082 1.00 0.39 \ ATOM 104 NH1 ARG a 11 -40.921 4.327 90.656 1.00 0.39 \ ATOM 105 NH2 ARG a 11 -41.546 6.526 90.730 1.00 0.39 \ ATOM 106 N ARG a 12 -35.954 3.456 84.229 1.00 0.39 \ ATOM 107 CA ARG a 12 -34.696 3.037 83.624 1.00 0.39 \ ATOM 108 C ARG a 12 -34.232 3.987 82.518 1.00 0.39 \ ATOM 109 O ARG a 12 -33.061 4.343 82.425 1.00 0.39 \ ATOM 110 CB ARG a 12 -34.846 1.643 83.042 1.00 0.39 \ ATOM 111 CG ARG a 12 -35.064 0.577 84.013 1.00 0.39 \ ATOM 112 CD ARG a 12 -34.307 -0.578 83.546 1.00 0.39 \ ATOM 113 NE ARG a 12 -34.702 -1.817 84.194 1.00 0.39 \ ATOM 114 CZ ARG a 12 -35.544 -2.692 83.661 1.00 0.39 \ ATOM 115 NH1 ARG a 12 -36.111 -2.434 82.479 1.00 0.39 \ ATOM 116 NH2 ARG a 12 -35.827 -3.809 84.314 1.00 0.39 \ ATOM 117 N LEU a 13 -35.197 4.374 81.692 1.00 0.39 \ ATOM 118 CA LEU a 13 -34.982 5.158 80.503 1.00 0.39 \ ATOM 119 C LEU a 13 -34.545 6.562 80.868 1.00 0.39 \ ATOM 120 O LEU a 13 -33.676 7.147 80.225 1.00 0.39 \ ATOM 121 CB LEU a 13 -36.272 5.171 79.687 1.00 0.39 \ ATOM 122 CG LEU a 13 -36.417 5.729 78.268 1.00 0.39 \ ATOM 123 CD1 LEU a 13 -37.386 6.877 78.318 1.00 0.39 \ ATOM 124 CD2 LEU a 13 -35.111 6.154 77.645 1.00 0.39 \ ATOM 125 N LYS a 14 -35.144 7.100 81.916 1.00 0.39 \ ATOM 126 CA LYS a 14 -34.805 8.452 82.323 1.00 0.39 \ ATOM 127 C LYS a 14 -33.374 8.501 82.901 1.00 0.39 \ ATOM 128 O LYS a 14 -32.609 9.443 82.640 1.00 0.39 \ ATOM 129 CB LYS a 14 -35.828 8.973 83.324 1.00 0.39 \ ATOM 130 CG LYS a 14 -37.042 9.519 82.651 1.00 0.39 \ ATOM 131 CD LYS a 14 -38.059 10.076 83.631 1.00 0.39 \ ATOM 132 CE LYS a 14 -38.657 8.981 84.487 1.00 0.39 \ ATOM 133 NZ LYS a 14 -39.880 9.476 85.202 1.00 0.39 \ ATOM 134 N ARG a 15 -33.013 7.471 83.660 1.00 0.39 \ ATOM 135 CA ARG a 15 -31.701 7.401 84.253 1.00 0.39 \ ATOM 136 C ARG a 15 -30.627 7.319 83.151 1.00 0.39 \ ATOM 137 O ARG a 15 -29.455 7.690 83.355 1.00 0.39 \ ATOM 138 CB ARG a 15 -31.647 6.214 85.212 1.00 0.39 \ ATOM 139 CG ARG a 15 -30.266 5.707 85.625 1.00 0.39 \ ATOM 140 CD ARG a 15 -30.423 4.679 86.735 1.00 0.39 \ ATOM 141 NE ARG a 15 -31.818 4.229 86.765 1.00 0.39 \ ATOM 142 CZ ARG a 15 -32.247 3.110 87.347 1.00 0.39 \ ATOM 143 NH1 ARG a 15 -31.389 2.309 87.987 1.00 0.39 \ ATOM 144 NH2 ARG a 15 -33.545 2.796 87.289 1.00 0.39 \ ATOM 145 N LYS a 16 -31.053 6.894 81.967 1.00 0.39 \ ATOM 146 CA LYS a 16 -30.171 6.711 80.822 1.00 0.39 \ ATOM 147 C LYS a 16 -29.936 8.043 80.100 1.00 0.39 \ ATOM 148 O LYS a 16 -28.806 8.407 79.774 1.00 0.39 \ ATOM 149 CB LYS a 16 -30.786 5.669 79.876 1.00 0.39 \ ATOM 150 CG LYS a 16 -29.769 4.947 79.033 1.00 0.39 \ ATOM 151 CD LYS a 16 -30.115 3.478 78.798 1.00 0.39 \ ATOM 152 CE LYS a 16 -28.813 2.706 78.447 1.00 0.39 \ ATOM 153 NZ LYS a 16 -27.938 3.566 77.532 1.00 0.39 \ ATOM 154 N ARG a 17 -31.037 8.763 79.869 1.00 0.39 \ ATOM 155 CA ARG a 17 -31.001 10.108 79.288 1.00 0.39 \ ATOM 156 C ARG a 17 -30.370 11.003 80.325 1.00 0.39 \ ATOM 157 O ARG a 17 -29.579 11.869 79.999 1.00 0.39 \ ATOM 158 CB ARG a 17 -32.410 10.593 78.861 1.00 0.39 \ ATOM 159 CG ARG a 17 -33.242 9.455 78.183 1.00 0.39 \ ATOM 160 CD ARG a 17 -34.261 9.836 77.103 1.00 0.39 \ ATOM 161 NE ARG a 17 -35.553 10.157 77.686 1.00 0.39 \ ATOM 162 CZ ARG a 17 -36.741 9.900 77.132 1.00 0.39 \ ATOM 163 NH1 ARG a 17 -36.843 9.273 75.954 1.00 0.39 \ ATOM 164 NH2 ARG a 17 -37.852 10.263 77.781 1.00 0.39 \ ATOM 165 N ARG a 18 -30.686 10.763 81.590 1.00 0.39 \ ATOM 166 CA ARG a 18 -30.015 11.515 82.625 1.00 0.39 \ ATOM 167 C ARG a 18 -28.516 11.276 82.468 1.00 0.39 \ ATOM 168 O ARG a 18 -27.740 12.235 82.553 1.00 0.39 \ ATOM 169 CB ARG a 18 -30.501 11.140 84.027 1.00 0.39 \ ATOM 170 CG ARG a 18 -30.197 12.214 85.090 1.00 0.39 \ ATOM 171 CD ARG a 18 -30.700 11.834 86.479 1.00 0.39 \ ATOM 172 NE ARG a 18 -32.035 11.249 86.390 1.00 0.39 \ ATOM 173 CZ ARG a 18 -32.492 10.247 87.159 1.00 0.39 \ ATOM 174 NH1 ARG a 18 -31.725 9.695 88.120 1.00 0.39 \ ATOM 175 NH2 ARG a 18 -33.734 9.803 86.973 1.00 0.39 \ ATOM 176 N LYS a 19 -28.095 10.040 82.189 1.00 0.39 \ ATOM 177 CA LYS a 19 -26.658 9.794 81.987 1.00 0.39 \ ATOM 178 C LYS a 19 -26.134 10.489 80.723 1.00 0.39 \ ATOM 179 O LYS a 19 -25.284 11.380 80.804 1.00 0.39 \ ATOM 180 CB LYS a 19 -26.338 8.296 81.921 1.00 0.39 \ ATOM 181 CG LYS a 19 -25.464 7.794 83.060 1.00 0.39 \ ATOM 182 CD LYS a 19 -26.303 7.496 84.337 1.00 0.39 \ ATOM 183 CE LYS a 19 -25.514 7.787 85.653 1.00 0.39 \ ATOM 184 NZ LYS a 19 -24.779 6.601 86.255 1.00 0.39 \ ATOM 185 N VAL a 20 -26.658 10.111 79.564 1.00 -2.46 \ ATOM 186 CA VAL a 20 -26.095 10.588 78.312 1.00 -2.46 \ ATOM 187 C VAL a 20 -25.973 12.103 78.283 1.00 -2.46 \ ATOM 188 O VAL a 20 -25.010 12.637 77.757 1.00 -2.46 \ ATOM 189 CB VAL a 20 -26.923 10.100 77.107 1.00 -2.46 \ ATOM 190 CG1 VAL a 20 -26.230 10.445 75.803 1.00 -2.46 \ ATOM 191 CG2 VAL a 20 -27.048 8.605 77.170 1.00 -2.46 \ ATOM 192 N ARG a 21 -26.918 12.797 78.894 1.00 0.39 \ ATOM 193 CA ARG a 21 -26.900 14.244 78.860 1.00 0.39 \ ATOM 194 C ARG a 21 -25.758 14.817 79.692 1.00 0.39 \ ATOM 195 O ARG a 21 -25.245 15.900 79.388 1.00 0.39 \ ATOM 196 CB ARG a 21 -28.226 14.812 79.335 1.00 0.39 \ ATOM 197 CG ARG a 21 -28.791 15.852 78.397 1.00 0.39 \ ATOM 198 CD ARG a 21 -30.011 16.494 78.978 1.00 0.39 \ ATOM 199 NE ARG a 21 -29.935 17.930 78.842 1.00 0.39 \ ATOM 200 CZ ARG a 21 -30.760 18.791 79.427 1.00 0.39 \ ATOM 201 NH1 ARG a 21 -30.595 20.088 79.230 1.00 0.39 \ ATOM 202 NH2 ARG a 21 -31.751 18.370 80.192 1.00 0.39 \ ATOM 203 N ALA a 22 -25.351 14.098 80.728 1.00 -2.46 \ ATOM 204 CA ALA a 22 -24.257 14.588 81.560 1.00 -2.46 \ ATOM 205 C ALA a 22 -22.898 14.557 80.818 1.00 -2.46 \ ATOM 206 O ALA a 22 -21.981 15.281 81.177 1.00 -2.46 \ ATOM 207 CB ALA a 22 -24.180 13.795 82.837 1.00 -2.46 \ ATOM 208 N ARG a 23 -22.792 13.743 79.767 1.00 0.39 \ ATOM 209 CA ARG a 23 -21.583 13.684 78.967 1.00 0.39 \ ATOM 210 C ARG a 23 -21.274 15.029 78.356 1.00 0.39 \ ATOM 211 O ARG a 23 -20.185 15.247 77.847 1.00 0.39 \ ATOM 212 CB ARG a 23 -21.701 12.660 77.837 1.00 0.39 \ ATOM 213 CG ARG a 23 -21.847 11.223 78.237 1.00 0.39 \ ATOM 214 CD ARG a 23 -21.956 10.311 77.018 1.00 0.39 \ ATOM 215 NE ARG a 23 -20.800 9.422 76.967 1.00 0.39 \ ATOM 216 CZ ARG a 23 -19.788 9.580 76.115 1.00 0.39 \ ATOM 217 NH1 ARG a 23 -18.747 8.767 76.122 1.00 0.39 \ ATOM 218 NH2 ARG a 23 -19.825 10.562 75.230 1.00 0.39 \ ATOM 219 N SER a 24 -22.235 15.934 78.395 1.00 -1.00 \ ATOM 220 CA SER a 24 -22.134 17.195 77.671 1.00 -1.00 \ ATOM 221 C SER a 24 -22.363 18.434 78.561 1.00 -1.00 \ ATOM 222 O SER a 24 -22.502 19.546 78.049 1.00 -1.00 \ ATOM 223 CB SER a 24 -23.135 17.180 76.507 1.00 -1.00 \ ATOM 224 OG SER a 24 -23.377 18.485 76.005 1.00 -1.00 \ ATOM 225 N LYS a 25 -22.409 18.239 79.882 1.00 -1.00 \ ATOM 226 CA LYS a 25 -22.711 19.325 80.831 1.00 -1.00 \ ATOM 227 C LYS a 25 -21.797 20.569 80.747 1.00 -1.00 \ ATOM 228 O LYS a 25 -20.843 20.628 79.969 1.00 -1.00 \ ATOM 229 CB LYS a 25 -22.653 18.799 82.259 1.00 -1.00 \ ATOM 230 CG LYS a 25 -23.913 18.115 82.722 1.00 -1.00 \ ATOM 231 CD LYS a 25 -23.892 17.912 84.274 1.00 -1.00 \ ATOM 232 CE LYS a 25 -22.472 17.542 84.762 1.00 -1.00 \ ATOM 233 NZ LYS a 25 -22.319 17.602 86.244 1.00 -1.00 \ """, "e4ujra1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4ujra1_csv", state=0, origin=1) cmd.zoom("e4ujra1_csv", animate=-1)