cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 -21.395 0.994 4.177 1.00 -1.00 \ ATOM 2 CA PHE D 1 -20.051 1.358 4.619 1.00 -1.00 \ ATOM 3 C PHE D 1 -19.929 1.261 6.138 1.00 -1.00 \ ATOM 4 O PHE D 1 -20.871 1.569 6.864 1.00 -1.00 \ ATOM 5 CB PHE D 1 -19.700 2.768 4.145 1.00 -1.00 \ ATOM 6 CG PHE D 1 -19.770 2.940 2.651 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 -19.386 1.915 1.801 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 -20.230 4.126 2.096 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 -19.453 2.073 0.414 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 -20.302 4.289 0.718 1.00 -1.00 \ ATOM 11 CZ PHE D 1 -19.914 3.258 -0.123 1.00 -1.00 \ ATOM 12 N VAL D 2 -18.764 0.834 6.613 1.00 -1.00 \ ATOM 13 CA VAL D 2 -18.551 0.634 8.046 1.00 -1.00 \ ATOM 14 C VAL D 2 -17.590 1.660 8.642 1.00 -1.00 \ ATOM 15 O VAL D 2 -16.860 2.348 7.922 1.00 -1.00 \ ATOM 16 CB VAL D 2 -18.001 -0.769 8.342 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 -19.054 -1.838 8.047 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 -16.724 -1.015 7.550 1.00 -1.00 \ ATOM 19 N ASN D 3 -17.592 1.751 9.966 1.00 -0.47 \ ATOM 20 CA ASN D 3 -16.670 2.626 10.671 1.00 -0.47 \ ATOM 21 C ASN D 3 -15.231 2.157 10.547 1.00 -0.47 \ ATOM 22 O ASN D 3 -14.969 0.959 10.412 1.00 -0.47 \ ATOM 23 CB ASN D 3 -17.049 2.725 12.143 1.00 -0.47 \ ATOM 24 CG ASN D 3 -18.174 3.700 12.377 1.00 -0.47 \ ATOM 25 OD1 ASN D 3 -18.303 4.690 11.655 1.00 -0.47 \ ATOM 26 ND2 ASN D 3 -18.996 3.432 13.386 1.00 -0.47 \ ATOM 27 N GLN D 4 -14.307 3.111 10.613 1.00 0.23 \ ATOM 28 CA GLN D 4 -12.903 2.845 10.330 1.00 0.23 \ ATOM 29 C GLN D 4 -11.953 3.291 11.438 1.00 0.23 \ ATOM 30 O GLN D 4 -12.156 4.335 12.044 1.00 0.23 \ ATOM 31 CB GLN D 4 -12.499 3.546 9.032 1.00 0.23 \ ATOM 32 CG GLN D 4 -13.440 3.308 7.863 1.00 0.23 \ ATOM 33 CD GLN D 4 -13.395 1.879 7.369 1.00 0.23 \ ATOM 34 OE1 GLN D 4 -12.507 1.105 7.732 1.00 0.23 \ ATOM 35 NE2 GLN D 4 -14.367 1.516 6.549 1.00 0.23 \ ATOM 36 N HIS D 5 -10.910 2.495 11.667 1.00 -0.04 \ ATOM 37 CA HIS D 5 -9.765 2.877 12.492 1.00 -0.04 \ ATOM 38 C HIS D 5 -8.549 3.146 11.596 1.00 -0.04 \ ATOM 39 O HIS D 5 -7.935 2.212 11.104 1.00 -0.04 \ ATOM 40 CB HIS D 5 -9.435 1.784 13.499 1.00 -0.04 \ ATOM 41 CG HIS D 5 -8.422 2.204 14.512 1.00 -0.04 \ ATOM 42 ND1 HIS D 5 -7.886 1.339 15.441 1.00 -0.04 \ ATOM 43 CD2 HIS D 5 -7.856 3.409 14.747 1.00 -0.04 \ ATOM 44 CE1 HIS D 5 -7.031 1.995 16.207 1.00 -0.04 \ ATOM 45 NE2 HIS D 5 -6.993 3.254 15.804 1.00 -0.04 \ ATOM 46 N LEU D 6 -8.206 4.415 11.385 1.00 1.16 \ ATOM 47 CA LEU D 6 -7.315 4.773 10.274 1.00 1.16 \ ATOM 48 C LEU D 6 -6.197 5.665 10.736 1.00 1.16 \ ATOM 49 O LEU D 6 -6.410 6.830 11.056 1.00 1.16 \ ATOM 50 CB LEU D 6 -8.080 5.472 9.137 1.00 1.16 \ ATOM 51 CG LEU D 6 -9.188 4.673 8.455 1.00 1.16 \ ATOM 52 CD1 LEU D 6 -10.014 5.585 7.557 1.00 1.16 \ ATOM 53 CD2 LEU D 6 -8.605 3.503 7.650 1.00 1.16 \ ATOM 54 N CYS D 7 -4.991 5.121 10.737 1.00 1.70 \ ATOM 55 CA CYS D 7 -3.816 5.852 11.201 1.00 1.70 \ ATOM 56 C CYS D 7 -2.791 5.973 10.103 1.00 1.70 \ ATOM 57 O CYS D 7 -2.758 5.151 9.179 1.00 1.70 \ ATOM 58 CB CYS D 7 -3.166 5.164 12.397 1.00 1.70 \ ATOM 59 SG CYS D 7 -4.201 5.032 13.874 1.00 1.70 \ ATOM 60 N GLY D 8 -1.956 7.000 10.218 1.00 0.73 \ ATOM 61 CA GLY D 8 -0.806 7.148 9.354 1.00 0.73 \ ATOM 62 C GLY D 8 -1.172 7.239 7.895 1.00 0.73 \ ATOM 63 O GLY D 8 -2.148 7.898 7.527 1.00 0.73 \ ATOM 64 N SER D 9 -0.368 6.599 7.055 0.68 -0.48 \ ATOM 65 CA SER D 9 -0.641 6.538 5.626 0.68 -0.48 \ ATOM 66 C SER D 9 -2.042 5.994 5.300 0.68 -0.48 \ ATOM 67 O SER D 9 -2.612 6.335 4.274 0.68 -0.48 \ ATOM 68 CB SER D 9 0.426 5.692 4.922 0.68 -0.48 \ ATOM 69 OG SER D 9 0.553 4.418 5.531 0.68 -0.48 \ ATOM 70 N HIS D 10 -2.594 5.155 6.168 1.00 -0.23 \ ATOM 71 CA HIS D 10 -3.885 4.524 5.889 1.00 -0.23 \ ATOM 72 C HIS D 10 -5.021 5.531 5.830 1.00 -0.23 \ ATOM 73 O HIS D 10 -5.989 5.365 5.090 1.00 -0.23 \ ATOM 74 CB HIS D 10 -4.202 3.474 6.933 1.00 -0.23 \ ATOM 75 CG HIS D 10 -3.208 2.365 6.967 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 -3.077 1.449 5.949 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 -2.262 2.065 7.882 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 -2.104 0.599 6.260 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 -1.600 0.954 7.422 1.00 -0.23 \ ATOM 80 N LEU D 11 -4.872 6.608 6.581 1.00 1.70 \ ATOM 81 CA LEU D 11 -5.864 7.667 6.514 1.00 1.70 \ ATOM 82 C LEU D 11 -5.836 8.350 5.148 1.00 1.70 \ ATOM 83 O LEU D 11 -6.861 8.591 4.539 1.00 1.70 \ ATOM 84 CB LEU D 11 -5.634 8.687 7.617 1.00 1.70 \ ATOM 85 CG LEU D 11 -6.649 9.825 7.574 1.00 1.70 \ ATOM 86 CD1 LEU D 11 -8.059 9.277 7.640 1.00 1.70 \ ATOM 87 CD2 LEU D 11 -6.399 10.737 8.700 1.00 1.70 \ ATOM 88 N VAL D 12 -4.638 8.642 4.649 1.00 0.73 \ ATOM 89 CA VAL D 12 -4.524 9.286 3.360 1.00 0.73 \ ATOM 90 C VAL D 12 -4.964 8.356 2.224 1.00 0.73 \ ATOM 91 O VAL D 12 -5.552 8.819 1.255 1.00 0.73 \ ATOM 92 CB VAL D 12 -3.076 9.774 3.150 1.00 0.73 \ ATOM 93 CG1 VAL D 12 -2.765 9.991 1.672 1.00 0.73 \ ATOM 94 CG2 VAL D 12 -2.845 11.040 3.982 1.00 0.73 \ ATOM 95 N GLU D 13 -4.714 7.055 2.351 1.00 0.65 \ ATOM 96 CA GLU D 13 -5.178 6.117 1.340 1.00 0.65 \ ATOM 97 C GLU D 13 -6.703 6.072 1.305 1.00 0.65 \ ATOM 98 O GLU D 13 -7.286 6.004 0.230 1.00 0.65 \ ATOM 99 CB GLU D 13 -4.588 4.733 1.590 1.00 0.65 \ ATOM 100 CG GLU D 13 -3.102 4.664 1.226 1.00 0.65 \ ATOM 101 CD GLU D 13 -2.342 3.626 2.031 1.00 0.65 \ ATOM 102 OE1 GLU D 13 -2.883 2.525 2.255 1.00 0.65 \ ATOM 103 OE2 GLU D 13 -1.202 3.920 2.460 1.00 0.65 \ ATOM 104 N ALA D 14 -7.342 6.167 2.475 1.00 0.00 \ ATOM 105 CA ALA D 14 -8.808 6.205 2.537 1.00 0.00 \ ATOM 106 C ALA D 14 -9.366 7.494 1.940 1.00 0.00 \ ATOM 107 O ALA D 14 -10.352 7.460 1.204 1.00 0.00 \ ATOM 108 CB ALA D 14 -9.280 6.022 3.996 1.00 0.00 \ ATOM 109 N LEU D 15 -8.710 8.616 2.198 1.00 1.70 \ ATOM 110 CA LEU D 15 -9.114 9.872 1.551 1.00 1.70 \ ATOM 111 C LEU D 15 -9.015 9.799 0.044 1.00 1.70 \ ATOM 112 O LEU D 15 -9.863 10.339 -0.676 1.00 1.70 \ ATOM 113 CB LEU D 15 -8.261 11.045 2.042 1.00 1.70 \ ATOM 114 CG LEU D 15 -8.585 11.479 3.461 1.00 1.70 \ ATOM 115 CD1 LEU D 15 -7.488 12.363 3.960 1.00 1.70 \ ATOM 116 CD2 LEU D 15 -9.924 12.214 3.521 1.00 1.70 \ ATOM 117 N TYR D 16 -7.957 9.152 -0.437 1.00 -0.22 \ ATOM 118 CA TYR D 16 -7.776 9.028 -1.860 1.00 -0.22 \ ATOM 119 C TYR D 16 -8.946 8.242 -2.454 1.00 -0.22 \ ATOM 120 O TYR D 16 -9.499 8.617 -3.481 1.00 -0.22 \ ATOM 121 CB TYR D 16 -6.443 8.360 -2.173 1.00 -0.22 \ ATOM 122 CG TYR D 16 -6.325 7.975 -3.623 1.00 -0.22 \ ATOM 123 CD1 TYR D 16 -5.896 8.887 -4.574 1.00 -0.22 \ ATOM 124 CD2 TYR D 16 -6.644 6.688 -4.039 1.00 -0.22 \ ATOM 125 CE1 TYR D 16 -5.814 8.544 -5.904 1.00 -0.22 \ ATOM 126 CE2 TYR D 16 -6.555 6.335 -5.378 1.00 -0.22 \ ATOM 127 CZ TYR D 16 -6.130 7.258 -6.287 1.00 -0.22 \ ATOM 128 OH TYR D 16 -6.042 6.883 -7.608 1.00 -0.22 \ ATOM 129 N LEU D 17 -9.333 7.159 -1.789 0.58 -0.23 \ ATOM 130 CA LEU D 17 -10.431 6.326 -2.280 0.58 -0.23 \ ATOM 131 C LEU D 17 -11.780 7.020 -2.212 0.58 -0.23 \ ATOM 132 O LEU D 17 -12.594 6.894 -3.125 0.58 -0.23 \ ATOM 133 CB LEU D 17 -10.494 5.017 -1.493 0.58 -0.23 \ ATOM 134 CG LEU D 17 -9.418 3.986 -1.837 0.58 -0.23 \ ATOM 135 CD1 LEU D 17 -9.460 2.807 -0.899 0.58 -0.23 \ ATOM 136 CD2 LEU D 17 -9.541 3.508 -3.281 0.58 -0.23 \ ATOM 137 N VAL D 18 -12.013 7.746 -1.127 1.00 0.29 \ ATOM 138 CA VAL D 18 -13.280 8.444 -0.934 1.00 0.29 \ ATOM 139 C VAL D 18 -13.439 9.669 -1.831 1.00 0.29 \ ATOM 140 O VAL D 18 -14.537 9.929 -2.341 1.00 0.29 \ ATOM 141 CB VAL D 18 -13.459 8.867 0.544 1.00 0.29 \ ATOM 142 CG1 VAL D 18 -14.604 9.879 0.699 1.00 0.29 \ ATOM 143 CG2 VAL D 18 -13.681 7.617 1.421 1.00 0.29 \ ATOM 144 N CYS D 19 -12.355 10.410 -2.050 1.00 1.70 \ ATOM 145 CA CYS D 19 -12.415 11.686 -2.768 1.00 1.70 \ ATOM 146 C CYS D 19 -12.054 11.574 -4.241 1.00 1.70 \ ATOM 147 O CYS D 19 -12.591 12.307 -5.072 1.00 1.70 \ ATOM 148 CB CYS D 19 -11.488 12.703 -2.103 1.00 1.70 \ ATOM 149 SG CYS D 19 -11.871 12.995 -0.391 1.00 1.70 \ ATOM 150 N GLY D 20 -11.097 10.706 -4.550 1.00 -0.15 \ ATOM 151 CA GLY D 20 -10.702 10.457 -5.926 1.00 -0.15 \ ATOM 152 C GLY D 20 -10.212 11.688 -6.659 1.00 -0.15 \ ATOM 153 O GLY D 20 -9.452 12.501 -6.122 1.00 -0.15 \ ATOM 154 N GLU D 21 -10.655 11.845 -7.897 1.00 0.18 \ ATOM 155 CA GLU D 21 -10.151 12.946 -8.695 1.00 0.18 \ ATOM 156 C GLU D 21 -10.844 14.260 -8.345 1.00 0.18 \ ATOM 157 O GLU D 21 -10.570 15.287 -8.955 1.00 0.18 \ ATOM 158 CB GLU D 21 -10.280 12.629 -10.185 1.00 0.18 \ ATOM 159 CG GLU D 21 -9.049 13.028 -11.003 1.00 0.18 \ ATOM 160 CD GLU D 21 -7.934 11.985 -10.958 1.00 0.18 \ ATOM 161 OE1 GLU D 21 -8.088 10.964 -10.251 1.00 0.18 \ ATOM 162 OE2 GLU D 21 -6.901 12.188 -11.638 1.00 0.18 \ ATOM 163 N ARG D 22 -11.705 14.247 -7.335 1.00 -0.60 \ ATOM 164 CA ARG D 22 -12.137 15.498 -6.734 1.00 -0.60 \ ATOM 165 C ARG D 22 -11.018 16.082 -5.877 1.00 -0.60 \ ATOM 166 O ARG D 22 -10.945 17.292 -5.680 1.00 -0.60 \ ATOM 167 CB ARG D 22 -13.411 15.298 -5.915 1.00 -0.60 \ ATOM 168 CG ARG D 22 -14.582 14.890 -6.793 1.00 -0.60 \ ATOM 169 CD ARG D 22 -15.872 14.657 -6.042 1.00 -0.60 \ ATOM 170 NE ARG D 22 -16.880 14.155 -6.975 1.00 -0.60 \ ATOM 171 CZ ARG D 22 -18.123 13.821 -6.646 1.00 -0.60 \ ATOM 172 NH1 ARG D 22 -18.957 13.369 -7.574 1.00 -0.60 \ ATOM 173 NH2 ARG D 22 -18.535 13.938 -5.393 1.00 -0.60 \ ATOM 174 N GLY D 23 -10.136 15.218 -5.384 1.00 1.70 \ ATOM 175 CA GLY D 23 -8.999 15.659 -4.593 1.00 1.70 \ ATOM 176 C GLY D 23 -9.321 15.878 -3.128 1.00 1.70 \ ATOM 177 O GLY D 23 -10.478 15.778 -2.718 1.00 1.70 \ ATOM 178 N PHE D 24 -8.302 16.183 -2.326 1.00 1.14 \ ATOM 179 CA PHE D 24 -8.529 16.357 -0.892 1.00 1.14 \ ATOM 180 C PHE D 24 -7.414 17.129 -0.228 1.00 1.14 \ ATOM 181 O PHE D 24 -6.326 17.294 -0.792 1.00 1.14 \ ATOM 182 CB PHE D 24 -8.720 15.012 -0.172 1.00 1.14 \ ATOM 183 CG PHE D 24 -7.508 14.123 -0.184 1.00 1.14 \ ATOM 184 CD1 PHE D 24 -7.352 13.191 -1.173 1.00 1.14 \ ATOM 185 CD2 PHE D 24 -6.533 14.218 0.806 1.00 1.14 \ ATOM 186 CE1 PHE D 24 -6.269 12.366 -1.197 1.00 1.14 \ ATOM 187 CE2 PHE D 24 -5.428 13.392 0.790 1.00 1.14 \ ATOM 188 CZ PHE D 24 -5.288 12.461 -0.218 1.00 1.14 \ ATOM 189 N PHE D 25 -7.672 17.598 0.987 0.35 0.51 \ ATOM 190 CA PHE D 25 -6.621 18.207 1.786 0.35 0.51 \ ATOM 191 C PHE D 25 -6.389 17.397 3.058 0.35 0.51 \ ATOM 192 O PHE D 25 -7.333 17.022 3.758 0.35 0.51 \ ATOM 193 CB PHE D 25 -6.959 19.657 2.125 0.35 0.51 \ ATOM 194 CG PHE D 25 -8.221 19.820 2.914 0.35 0.51 \ ATOM 195 CD1 PHE D 25 -9.456 19.810 2.283 0.35 0.51 \ ATOM 196 CD2 PHE D 25 -8.174 20.005 4.283 0.35 0.51 \ ATOM 197 CE1 PHE D 25 -10.618 19.968 3.009 0.35 0.51 \ ATOM 198 CE2 PHE D 25 -9.333 20.161 5.014 0.35 0.51 \ ATOM 199 CZ PHE D 25 -10.555 20.147 4.375 0.35 0.51 \ ATOM 200 N TYR D 26 -5.121 17.125 3.334 1.00 -0.24 \ ATOM 201 CA TYR D 26 -4.721 16.360 4.514 1.00 -0.24 \ ATOM 202 C TYR D 26 -4.164 17.365 5.504 1.00 -0.24 \ ATOM 203 O TYR D 26 -3.114 17.955 5.272 1.00 -0.24 \ ATOM 204 CB TYR D 26 -3.694 15.286 4.133 1.00 -0.24 \ ATOM 205 CG TYR D 26 -3.118 14.535 5.307 1.00 -0.24 \ ATOM 206 CD1 TYR D 26 -1.785 14.680 5.658 1.00 -0.24 \ ATOM 207 CD2 TYR D 26 -3.907 13.677 6.062 1.00 -0.24 \ ATOM 208 CE1 TYR D 26 -1.255 13.995 6.736 1.00 -0.24 \ ATOM 209 CE2 TYR D 26 -3.379 12.986 7.136 1.00 -0.24 \ ATOM 210 CZ TYR D 26 -2.053 13.144 7.466 1.00 -0.24 \ ATOM 211 OH TYR D 26 -1.536 12.457 8.551 1.00 -0.24 \ ATOM 212 N PRO D 28 -3.349 17.467 9.392 1.00 -0.79 \ ATOM 213 CA PRO D 28 -3.197 16.976 10.763 1.00 -0.79 \ ATOM 214 C PRO D 28 -3.081 18.143 11.739 1.00 -0.79 \ ATOM 215 O PRO D 28 -2.850 19.282 11.327 1.00 -0.79 \ ATOM 216 CB PRO D 28 -1.890 16.175 10.728 1.00 -0.79 \ ATOM 217 CG PRO D 28 -1.479 16.097 9.322 1.00 -0.79 \ ATOM 218 CD PRO D 28 -2.168 17.173 8.564 1.00 -0.79 \ ATOM 219 N LYS D 29 -3.247 17.860 13.024 1.00 -0.90 \ ATOM 220 CA LYS D 29 -2.965 18.857 14.050 1.00 -0.90 \ ATOM 221 C LYS D 29 -1.454 18.990 14.247 1.00 -0.90 \ ATOM 222 O LYS D 29 -0.709 18.012 14.093 1.00 -0.90 \ ATOM 223 CB LYS D 29 -3.652 18.487 15.363 1.00 -0.90 \ ATOM 224 CG LYS D 29 -4.541 19.582 15.911 1.00 -0.90 \ ATOM 225 CD LYS D 29 -5.533 19.033 16.920 1.00 -0.90 \ ATOM 226 CE LYS D 29 -4.850 18.612 18.194 1.00 -0.90 \ ATOM 227 NZ LYS D 29 -5.839 18.303 19.275 1.00 -0.90 \ ATOM 228 N THR D 30 -1.015 20.205 14.573 1.00 -1.45 \ ATOM 229 CA THR D 30 0.405 20.527 14.739 1.00 -1.45 \ ATOM 230 C THR D 30 1.245 20.089 13.538 1.00 -1.45 \ ATOM 231 O THR D 30 0.731 19.913 12.431 1.00 -1.45 \ ATOM 232 CB THR D 30 0.992 19.887 16.017 1.00 -1.45 \ ATOM 233 OG1 THR D 30 0.260 20.340 17.163 1.00 -1.45 \ ATOM 234 CG2 THR D 30 2.458 20.266 16.179 1.00 -1.45 \ """, "e4xc4D1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e4xc4D1_csv", state=0, origin=1) cmd.zoom("e4xc4D1_csv", animate=-1)