cmd.read_pdbstr("""\ ATOM 1 N VAL y 18 3.717 -52.203 -19.461 1.00 -1.50 \ ATOM 2 CA VAL y 18 5.132 -51.867 -19.064 1.00 -1.50 \ ATOM 3 C VAL y 18 6.026 -51.538 -20.277 1.00 -1.50 \ ATOM 4 O VAL y 18 6.229 -50.353 -20.591 1.00 -1.50 \ ATOM 5 CB VAL y 18 5.769 -52.984 -18.207 1.00 -1.50 \ ATOM 6 N ILE y 19 6.567 -52.572 -20.938 1.00 0.64 \ ATOM 7 CA ILE y 19 7.215 -52.417 -22.257 1.00 0.64 \ ATOM 8 C ILE y 19 6.132 -52.107 -23.298 1.00 0.64 \ ATOM 9 O ILE y 19 6.369 -51.356 -24.261 1.00 0.64 \ ATOM 10 CB ILE y 19 7.996 -53.674 -22.690 1.00 0.64 \ ATOM 11 N ALA y 20 4.940 -52.669 -23.060 1.00 0.64 \ ATOM 12 CA ALA y 20 3.745 -52.401 -23.842 1.00 0.64 \ ATOM 13 C ALA y 20 3.360 -50.917 -23.793 1.00 0.64 \ ATOM 14 O ALA y 20 3.181 -50.298 -24.836 1.00 0.64 \ ATOM 15 CB ALA y 20 2.594 -53.274 -23.354 1.00 0.64 \ ATOM 16 N GLN y 21 3.226 -50.356 -22.589 1.00 0.64 \ ATOM 17 CA GLN y 21 2.964 -48.917 -22.431 1.00 0.64 \ ATOM 18 C GLN y 21 4.029 -48.036 -23.130 1.00 0.64 \ ATOM 19 O GLN y 21 3.686 -47.098 -23.876 1.00 0.64 \ ATOM 20 CB GLN y 21 2.854 -48.551 -20.946 1.00 0.64 \ ATOM 21 CG GLN y 21 1.460 -48.670 -20.376 1.00 0.64 \ ATOM 22 CD GLN y 21 1.466 -49.008 -18.897 1.00 0.64 \ ATOM 23 OE1 GLN y 21 2.456 -49.511 -18.369 1.00 0.64 \ ATOM 24 NE2 GLN y 21 0.353 -48.735 -18.221 1.00 0.64 \ ATOM 25 N LEU y 22 5.305 -48.365 -22.898 1.00 0.64 \ ATOM 26 CA LEU y 22 6.442 -47.613 -23.446 1.00 0.64 \ ATOM 27 C LEU y 22 6.491 -47.660 -24.977 1.00 0.64 \ ATOM 28 O LEU y 22 6.789 -46.632 -25.600 1.00 0.64 \ ATOM 29 CB LEU y 22 7.775 -48.061 -22.827 1.00 0.64 \ ATOM 30 CG LEU y 22 8.180 -47.561 -21.424 1.00 0.64 \ ATOM 31 CD1 LEU y 22 9.349 -48.371 -20.879 1.00 0.64 \ ATOM 32 CD2 LEU y 22 8.527 -46.079 -21.415 1.00 0.64 \ ATOM 33 N THR y 23 6.172 -48.825 -25.566 1.00 0.64 \ ATOM 34 CA THR y 23 6.024 -48.946 -27.041 1.00 0.64 \ ATOM 35 C THR y 23 4.859 -48.134 -27.611 1.00 0.64 \ ATOM 36 O THR y 23 5.036 -47.449 -28.625 1.00 0.64 \ ATOM 37 CB THR y 23 5.825 -50.398 -27.520 1.00 0.64 \ ATOM 38 OG1 THR y 23 6.532 -51.286 -26.663 1.00 0.64 \ ATOM 39 CG2 THR y 23 6.325 -50.566 -28.970 1.00 0.64 \ ATOM 40 N MET y 24 3.671 -48.237 -26.999 1.00 0.64 \ ATOM 41 CA MET y 24 2.533 -47.430 -27.447 1.00 0.64 \ ATOM 42 C MET y 24 2.931 -45.972 -27.425 1.00 0.64 \ ATOM 43 O MET y 24 2.724 -45.269 -28.410 1.00 0.64 \ ATOM 44 CB MET y 24 1.275 -47.635 -26.594 1.00 0.64 \ ATOM 45 CG MET y 24 0.771 -49.067 -26.571 1.00 0.64 \ ATOM 46 SD MET y 24 0.835 -49.774 -28.235 1.00 0.64 \ ATOM 47 CE MET y 24 -0.900 -49.685 -28.663 1.00 0.64 \ ATOM 48 N ILE y 25 3.525 -45.550 -26.303 1.00 -1.50 \ ATOM 49 CA ILE y 25 3.953 -44.163 -26.087 1.00 -1.50 \ ATOM 50 C ILE y 25 4.944 -43.706 -27.157 1.00 -1.50 \ ATOM 51 O ILE y 25 4.824 -42.591 -27.675 1.00 -1.50 \ ATOM 52 CB ILE y 25 4.603 -43.956 -24.688 1.00 -1.50 \ ATOM 53 N ALA y 26 5.911 -44.572 -27.477 1.00 0.64 \ ATOM 54 CA ALA y 26 6.965 -44.255 -28.456 1.00 0.64 \ ATOM 55 C ALA y 26 6.423 -44.073 -29.879 1.00 0.64 \ ATOM 56 O ALA y 26 6.857 -43.174 -30.597 1.00 0.64 \ ATOM 57 CB ALA y 26 8.077 -45.301 -28.427 1.00 0.64 \ ATOM 58 N MET y 27 5.475 -44.917 -30.272 1.00 -1.50 \ ATOM 59 CA MET y 27 4.875 -44.845 -31.604 1.00 -1.50 \ ATOM 60 C MET y 27 3.939 -43.663 -31.764 1.00 -1.50 \ ATOM 61 O MET y 27 3.893 -43.016 -32.817 1.00 -1.50 \ ATOM 62 CB MET y 27 4.084 -46.112 -31.876 1.00 -1.50 \ ATOM 63 CG MET y 27 4.925 -47.375 -31.807 1.00 -1.50 \ ATOM 64 SD MET y 27 4.028 -48.773 -32.503 1.00 -1.50 \ ATOM 65 CE MET y 27 4.057 -48.373 -34.256 1.00 -1.50 \ ATOM 66 N ILE y 28 3.161 -43.394 -30.726 1.00 0.64 \ ATOM 67 CA ILE y 28 2.229 -42.273 -30.763 1.00 0.64 \ ATOM 68 C ILE y 28 3.094 -41.020 -30.772 1.00 0.64 \ ATOM 69 O ILE y 28 2.812 -40.061 -31.479 1.00 0.64 \ ATOM 70 CB ILE y 28 1.287 -42.301 -29.540 1.00 0.64 \ ATOM 71 CG1 ILE y 28 0.144 -43.283 -29.795 1.00 0.64 \ ATOM 72 CG2 ILE y 28 0.729 -40.905 -29.213 1.00 0.64 \ ATOM 73 CD1 ILE y 28 -0.493 -43.796 -28.524 1.00 0.64 \ ATOM 74 N GLY y 29 4.181 -41.067 -30.013 1.00 -1.50 \ ATOM 75 CA GLY y 29 5.091 -39.930 -29.862 1.00 -1.50 \ ATOM 76 C GLY y 29 5.809 -39.586 -31.156 1.00 -1.50 \ ATOM 77 O GLY y 29 6.069 -38.413 -31.454 1.00 -1.50 \ ATOM 78 N ILE y 30 6.133 -40.610 -31.937 1.00 0.64 \ ATOM 79 CA ILE y 30 6.920 -40.404 -33.155 1.00 0.64 \ ATOM 80 C ILE y 30 6.029 -39.900 -34.280 1.00 0.64 \ ATOM 81 O ILE y 30 6.479 -39.160 -35.158 1.00 0.64 \ ATOM 82 CB ILE y 30 7.768 -41.663 -33.541 1.00 0.64 \ ATOM 83 CG1 ILE y 30 8.930 -41.272 -34.451 1.00 0.64 \ ATOM 84 CG2 ILE y 30 6.906 -42.741 -34.196 1.00 0.64 \ ATOM 85 CD1 ILE y 30 9.637 -39.999 -34.012 1.00 0.64 \ ATOM 86 N ALA y 31 4.754 -40.288 -34.236 1.00 0.64 \ ATOM 87 CA ALA y 31 3.809 -39.953 -35.296 1.00 0.64 \ ATOM 88 C ALA y 31 3.745 -38.465 -35.676 1.00 0.64 \ ATOM 89 O ALA y 31 3.628 -38.137 -36.863 1.00 0.64 \ ATOM 90 CB ALA y 31 2.412 -40.435 -34.928 1.00 0.64 \ ATOM 91 N GLY y 32 3.767 -37.580 -34.670 1.00 0.64 \ ATOM 92 CA GLY y 32 3.659 -36.137 -34.905 1.00 0.64 \ ATOM 93 C GLY y 32 4.861 -35.611 -35.662 1.00 0.64 \ ATOM 94 O GLY y 32 4.705 -34.987 -36.708 1.00 0.64 \ ATOM 95 N PRO y 33 6.073 -35.861 -35.135 1.00 0.64 \ ATOM 96 CA PRO y 33 7.296 -35.478 -35.847 1.00 0.64 \ ATOM 97 C PRO y 33 7.435 -36.150 -37.231 1.00 0.64 \ ATOM 98 O PRO y 33 7.910 -35.508 -38.167 1.00 0.64 \ ATOM 99 CB PRO y 33 8.402 -35.909 -34.884 1.00 0.64 \ ATOM 100 CG PRO y 33 7.767 -35.741 -33.544 1.00 0.64 \ ATOM 101 CD PRO y 33 6.373 -36.256 -33.743 1.00 0.64 \ ATOM 102 N MET y 34 6.990 -37.402 -37.350 1.00 -1.50 \ ATOM 103 CA MET y 34 6.961 -38.107 -38.630 1.00 -1.50 \ ATOM 104 C MET y 34 6.197 -37.328 -39.705 1.00 -1.50 \ ATOM 105 O MET y 34 6.690 -37.169 -40.836 1.00 -1.50 \ ATOM 106 CB MET y 34 6.385 -39.527 -38.479 1.00 -1.50 \ ATOM 107 CG MET y 34 6.653 -40.478 -39.655 1.00 -1.50 \ ATOM 108 SD MET y 34 8.345 -40.360 -40.319 1.00 -1.50 \ ATOM 109 CE MET y 34 9.430 -40.656 -38.903 1.00 -1.50 \ ATOM 110 N ILE y 35 5.008 -36.837 -39.365 1.00 -1.50 \ ATOM 111 CA ILE y 35 4.229 -36.043 -40.306 1.00 -1.50 \ ATOM 112 C ILE y 35 5.038 -34.813 -40.762 1.00 -1.50 \ ATOM 113 O ILE y 35 5.102 -34.497 -41.968 1.00 -1.50 \ ATOM 114 CB ILE y 35 2.853 -35.638 -39.722 1.00 -1.50 \ ATOM 115 CG1 ILE y 35 2.011 -36.880 -39.407 1.00 -1.50 \ ATOM 116 CG2 ILE y 35 2.114 -34.669 -40.628 1.00 -1.50 \ ATOM 117 CD1 ILE y 35 0.931 -36.645 -38.350 1.00 -1.50 \ ATOM 118 N ILE y 36 5.696 -34.144 -39.822 1.00 0.64 \ ATOM 119 CA ILE y 36 6.482 -32.980 -40.188 1.00 0.64 \ ATOM 120 C ILE y 36 7.643 -33.407 -41.107 1.00 0.64 \ ATOM 121 O ILE y 36 7.979 -32.732 -42.093 1.00 0.64 \ ATOM 122 CB ILE y 36 6.990 -32.207 -38.952 1.00 0.64 \ ATOM 123 CG1 ILE y 36 5.834 -31.885 -37.990 1.00 0.64 \ ATOM 124 CG2 ILE y 36 7.603 -30.900 -39.379 1.00 0.64 \ ATOM 125 CD1 ILE y 36 4.634 -31.159 -38.600 1.00 0.64 \ ATOM 126 N PHE y 37 8.222 -34.551 -40.801 1.00 0.64 \ ATOM 127 CA PHE y 37 9.398 -34.998 -41.512 1.00 0.64 \ ATOM 128 C PHE y 37 9.040 -35.374 -42.929 1.00 0.64 \ ATOM 129 O PHE y 37 9.748 -34.977 -43.863 1.00 0.64 \ ATOM 130 CB PHE y 37 10.035 -36.187 -40.825 1.00 0.64 \ ATOM 131 CG PHE y 37 11.226 -36.703 -41.540 1.00 0.64 \ ATOM 132 CD1 PHE y 37 11.146 -37.867 -42.290 1.00 0.64 \ ATOM 133 CD2 PHE y 37 12.433 -36.011 -41.487 1.00 0.64 \ ATOM 134 CE1 PHE y 37 12.259 -38.345 -42.959 1.00 0.64 \ ATOM 135 CE2 PHE y 37 13.543 -36.485 -42.159 1.00 0.64 \ ATOM 136 CZ PHE y 37 13.457 -37.649 -42.896 1.00 0.64 \ ATOM 137 N LEU y 38 7.942 -36.119 -43.079 1.00 0.64 \ ATOM 138 CA LEU y 38 7.508 -36.552 -44.394 1.00 0.64 \ ATOM 139 C LEU y 38 7.153 -35.355 -45.263 1.00 0.64 \ ATOM 140 O LEU y 38 7.417 -35.343 -46.478 1.00 0.64 \ ATOM 141 CB LEU y 38 6.356 -37.550 -44.317 1.00 0.64 \ ATOM 142 CG LEU y 38 6.617 -38.892 -43.607 1.00 0.64 \ ATOM 143 CD1 LEU y 38 5.310 -39.646 -43.442 1.00 0.64 \ ATOM 144 CD2 LEU y 38 7.640 -39.760 -44.321 1.00 0.64 \ ATOM 145 N LEU y 39 6.566 -34.333 -44.648 1.00 0.64 \ ATOM 146 CA LEU y 39 6.199 -33.136 -45.405 1.00 0.64 \ ATOM 147 C LEU y 39 7.407 -32.305 -45.793 1.00 0.64 \ ATOM 148 O LEU y 39 7.490 -31.820 -46.922 1.00 0.64 \ ATOM 149 CB LEU y 39 5.114 -32.322 -44.686 1.00 0.64 \ ATOM 150 CG LEU y 39 3.745 -32.996 -44.758 1.00 0.64 \ ATOM 151 CD1 LEU y 39 2.775 -32.339 -43.777 1.00 0.64 \ ATOM 152 CD2 LEU y 39 3.216 -32.916 -46.187 1.00 0.64 \ ATOM 153 N ALA y 40 8.365 -32.179 -44.881 1.00 0.64 \ ATOM 154 CA ALA y 40 9.625 -31.487 -45.177 1.00 0.64 \ ATOM 155 C ALA y 40 10.311 -32.147 -46.372 1.00 0.64 \ ATOM 156 O ALA y 40 10.628 -31.482 -47.361 1.00 0.64 \ ATOM 157 CB ALA y 40 10.549 -31.500 -43.967 1.00 0.64 \ ATOM 158 N VAL y 41 10.522 -33.456 -46.265 1.00 -1.50 \ ATOM 159 CA VAL y 41 11.156 -34.260 -47.317 1.00 -1.50 \ ATOM 160 C VAL y 41 10.572 -34.001 -48.709 1.00 -1.50 \ ATOM 161 O VAL y 41 11.310 -33.932 -49.693 1.00 -1.50 \ ATOM 162 CB VAL y 41 11.076 -35.765 -46.976 1.00 -1.50 \ ATOM 163 CG1 VAL y 41 11.271 -36.626 -48.219 1.00 -1.50 \ ATOM 164 CG2 VAL y 41 12.110 -36.109 -45.915 1.00 -1.50 \ ATOM 165 N ARG y 42 9.256 -33.843 -48.795 1.00 0.64 \ ATOM 166 CA ARG y 42 8.627 -33.669 -50.093 1.00 0.64 \ ATOM 167 C ARG y 42 8.062 -32.262 -50.364 1.00 0.64 \ ATOM 168 O ARG y 42 7.065 -32.104 -51.092 1.00 0.64 \ ATOM 169 CB ARG y 42 7.569 -34.740 -50.285 1.00 0.64 \ ATOM 170 CG ARG y 42 6.344 -34.546 -49.433 1.00 0.64 \ ATOM 171 CD ARG y 42 5.311 -35.568 -49.821 1.00 0.64 \ ATOM 172 NE ARG y 42 5.634 -36.902 -49.324 1.00 0.64 \ ATOM 173 CZ ARG y 42 4.780 -37.922 -49.349 1.00 0.64 \ ATOM 174 NH1 ARG y 42 3.546 -37.752 -49.839 1.00 0.64 \ ATOM 175 NH2 ARG y 42 5.154 -39.104 -48.878 1.00 0.64 \ ATOM 176 N ARG y 43 8.708 -31.251 -49.782 1.00 -1.50 \ ATOM 177 CA ARG y 43 8.329 -29.839 -49.951 1.00 -1.50 \ ATOM 178 C ARG y 43 6.820 -29.578 -49.950 1.00 -1.50 \ ATOM 179 O ARG y 43 6.309 -28.818 -50.778 1.00 -1.50 \ ATOM 180 CB ARG y 43 9.003 -29.230 -51.197 1.00 -1.50 \ ATOM 181 CG ARG y 43 10.490 -28.957 -51.007 1.00 -1.50 \ ATOM 182 CD ARG y 43 11.228 -28.920 -52.343 1.00 -1.50 \ ATOM 183 NE ARG y 43 12.678 -28.818 -52.185 1.00 -1.50 \ ATOM 184 CZ ARG y 43 13.560 -29.091 -53.148 1.00 -1.50 \ ATOM 185 NH1 ARG y 43 13.145 -29.475 -54.348 1.00 -1.50 \ ATOM 186 NH2 ARG y 43 14.870 -28.974 -52.914 1.00 -1.50 \ ATOM 187 N GLY y 44 6.114 -30.188 -48.994 1.00 0.64 \ ATOM 188 CA GLY y 44 4.663 -29.982 -48.854 1.00 0.64 \ ATOM 189 C GLY y 44 4.328 -28.638 -48.225 1.00 0.64 \ ATOM 190 O GLY y 44 5.216 -27.818 -47.927 1.00 0.64 \ ATOM 191 N ASN y 45 3.038 -28.417 -48.003 1.00 -1.50 \ ATOM 192 CA ASN y 45 2.569 -27.135 -47.592 1.00 -1.50 \ ATOM 193 C ASN y 45 2.678 -26.851 -46.068 1.00 -1.50 \ ATOM 194 O ASN y 45 1.673 -26.491 -45.428 1.00 -1.50 \ ATOM 195 CB ASN y 45 1.138 -26.964 -48.061 1.00 -1.50 \ ATOM 196 CG ASN y 45 0.825 -25.543 -48.390 1.00 -1.50 \ ATOM 197 OD1 ASN y 45 1.728 -24.741 -48.666 1.00 -1.50 \ ATOM 198 ND2 ASN y 45 -0.455 -25.196 -48.346 1.00 -1.50 \ ATOM 199 N LEU y 46 3.893 -26.969 -45.521 1.00 0.64 \ ATOM 200 CA LEU y 46 4.146 -26.664 -44.111 1.00 0.64 \ ATOM 201 C LEU y 46 3.884 -25.204 -43.815 1.00 0.64 \ ATOM 202 O LEU y 46 3.616 -24.878 -42.656 1.00 0.64 \ ATOM 203 CB LEU y 46 5.579 -27.021 -43.707 1.00 0.64 \ ATOM 204 CG LEU y 46 5.923 -28.510 -43.667 1.00 0.64 \ ATOM 205 CD1 LEU y 46 7.381 -28.743 -43.286 1.00 0.64 \ ATOM 206 CD2 LEU y 46 4.995 -29.227 -42.691 1.00 0.64 \ ATOM 207 OXT LEU y 46 3.905 -24.341 -44.715 1.00 0.64 \ """, "e5b5ey1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5b5ey1_csv", state=0, origin=1) cmd.zoom("e5b5ey1_csv", animate=-1)