cmd.read_pdbstr("""\ ATOM 1 N PHE B 1 2.890 -18.817 6.169 1.00 -1.00 \ ATOM 2 CA PHE B 1 3.602 -18.413 7.418 1.00 -1.00 \ ATOM 3 C PHE B 1 2.786 -17.403 8.192 1.00 -1.00 \ ATOM 4 O PHE B 1 2.170 -16.569 7.576 1.00 -1.00 \ ATOM 5 CB PHE B 1 4.959 -17.822 7.057 1.00 -1.00 \ ATOM 6 CG PHE B 1 5.980 -17.924 8.160 1.00 -1.00 \ ATOM 7 CD1 PHE B 1 6.650 -19.139 8.384 1.00 -1.00 \ ATOM 8 CD2 PHE B 1 6.318 -16.808 8.921 1.00 -1.00 \ ATOM 9 CE1 PHE B 1 7.629 -19.231 9.375 1.00 -1.00 \ ATOM 10 CE2 PHE B 1 7.271 -16.906 9.917 1.00 -1.00 \ ATOM 11 CZ PHE B 1 7.924 -18.111 10.136 1.00 -1.00 \ ATOM 12 N VAL B 2 2.871 -17.453 9.526 1.00 -1.00 \ ATOM 13 CA VAL B 2 2.159 -16.517 10.432 1.00 -1.00 \ ATOM 14 C VAL B 2 2.192 -15.072 9.984 1.00 -1.00 \ ATOM 15 O VAL B 2 3.232 -14.537 9.570 1.00 -1.00 \ ATOM 16 CB VAL B 2 2.685 -16.666 11.854 1.00 -1.00 \ ATOM 17 CG1 VAL B 2 4.060 -16.012 11.998 1.00 -1.00 \ ATOM 18 CG2 VAL B 2 1.678 -16.200 12.938 1.00 -1.00 \ ATOM 19 N ASN B 3 1.031 -14.432 10.105 1.00 -0.47 \ ATOM 20 CA ASN B 3 0.760 -13.085 9.592 0.50 -0.47 \ ATOM 21 C ASN B 3 0.827 -12.022 10.726 1.00 -0.47 \ ATOM 22 O ASN B 3 0.087 -12.148 11.721 1.00 -0.47 \ ATOM 23 CB ASN B 3 -0.652 -13.152 8.965 0.50 -0.47 \ ATOM 24 CG ASN B 3 -1.038 -11.927 8.155 0.50 -0.47 \ ATOM 25 OD1 ASN B 3 -0.442 -10.867 8.257 0.50 -0.47 \ ATOM 26 ND2 ASN B 3 -2.103 -12.079 7.378 0.50 -0.47 \ ATOM 27 N GLN B 4 1.647 -10.979 10.554 1.00 0.23 \ ATOM 28 CA GLN B 4 1.795 -9.918 11.536 1.00 0.23 \ ATOM 29 C GLN B 4 0.882 -8.736 11.265 1.00 0.23 \ ATOM 30 O GLN B 4 0.833 -7.824 12.087 1.00 0.23 \ ATOM 31 CB GLN B 4 3.248 -9.409 11.609 1.00 0.23 \ ATOM 32 CG GLN B 4 4.319 -10.457 11.902 1.00 0.23 \ ATOM 33 CD GLN B 4 3.986 -11.309 13.088 1.00 0.23 \ ATOM 34 OE1 GLN B 4 3.395 -10.815 14.072 1.00 0.23 \ ATOM 35 NE2 GLN B 4 4.385 -12.608 13.036 1.00 0.23 \ ATOM 36 N HIS B 5 0.137 -8.787 10.161 1.00 -0.04 \ ATOM 37 CA HIS B 5 -0.594 -7.624 9.681 1.00 -0.04 \ ATOM 38 C HIS B 5 -1.895 -7.557 10.465 1.00 -0.04 \ ATOM 39 O HIS B 5 -2.462 -8.575 10.733 1.00 -0.04 \ ATOM 40 CB HIS B 5 -0.842 -7.772 8.180 1.00 -0.04 \ ATOM 41 CG HIS B 5 0.412 -7.662 7.365 1.00 -0.04 \ ATOM 42 ND1 HIS B 5 0.879 -8.660 6.540 1.00 -0.04 \ ATOM 43 CD2 HIS B 5 1.312 -6.657 7.278 1.00 -0.04 \ ATOM 44 CE1 HIS B 5 1.996 -8.267 5.956 1.00 -0.04 \ ATOM 45 NE2 HIS B 5 2.289 -7.056 6.399 1.00 -0.04 \ ATOM 46 N LEU B 6 -2.363 -6.364 10.813 1.00 1.14 \ ATOM 47 CA LEU B 6 -3.678 -6.170 11.474 1.00 1.14 \ ATOM 48 C LEU B 6 -4.603 -5.523 10.478 1.00 1.14 \ ATOM 49 O LEU B 6 -4.349 -4.394 10.063 1.00 1.14 \ ATOM 50 CB LEU B 6 -3.559 -5.209 12.665 1.00 1.14 \ ATOM 51 CG LEU B 6 -2.461 -5.524 13.671 1.00 1.14 \ ATOM 52 CD1 LEU B 6 -2.267 -4.329 14.606 1.00 1.14 \ ATOM 53 CD2 LEU B 6 -2.850 -6.777 14.427 1.00 1.14 \ ATOM 54 N CYS B 7 -5.664 -6.232 10.082 1.00 1.71 \ ATOM 55 CA CYS B 7 -6.551 -5.724 9.070 1.00 1.71 \ ATOM 56 C CYS B 7 -7.926 -5.936 9.583 1.00 1.71 \ ATOM 57 O CYS B 7 -8.174 -6.950 10.220 1.00 1.71 \ ATOM 58 CB CYS B 7 -6.356 -6.462 7.772 1.00 1.71 \ ATOM 59 SG CYS B 7 -4.647 -6.260 7.267 1.00 1.71 \ ATOM 60 N GLY B 8 -8.787 -4.964 9.288 1.00 0.70 \ ATOM 61 CA GLY B 8 -10.217 -5.055 9.465 1.00 0.70 \ ATOM 62 C GLY B 8 -10.612 -5.129 10.920 1.00 0.70 \ ATOM 63 O GLY B 8 -10.090 -4.378 11.723 1.00 0.70 \ ATOM 64 N SER B 9 -11.552 -6.024 11.260 1.00 -0.48 \ ATOM 65 CA SER B 9 -11.845 -6.294 12.673 1.00 -0.48 \ ATOM 66 C SER B 9 -10.546 -6.452 13.521 1.00 -0.48 \ ATOM 67 O SER B 9 -10.482 -6.052 14.667 1.00 -0.48 \ ATOM 68 CB SER B 9 -12.781 -7.515 12.824 1.00 -0.48 \ ATOM 69 OG SER B 9 -12.092 -8.755 12.610 1.00 -0.48 \ ATOM 70 N HIS B 10 -9.501 -7.043 12.975 1.00 -0.23 \ ATOM 71 CA HIS B 10 -8.297 -7.229 13.812 1.00 -0.23 \ ATOM 72 C HIS B 10 -7.683 -5.923 14.245 1.00 -0.23 \ ATOM 73 O HIS B 10 -7.038 -5.882 15.262 1.00 -0.23 \ ATOM 74 CB HIS B 10 -7.237 -8.061 13.117 1.00 -0.23 \ ATOM 75 CG HIS B 10 -7.674 -9.462 12.849 1.00 -0.23 \ ATOM 76 ND1 HIS B 10 -8.169 -9.867 11.626 1.00 -0.23 \ ATOM 77 CD2 HIS B 10 -7.752 -10.535 13.666 1.00 -0.23 \ ATOM 78 CE1 HIS B 10 -8.502 -11.145 11.697 1.00 -0.23 \ ATOM 79 NE2 HIS B 10 -8.252 -11.576 12.921 1.00 -0.23 \ ATOM 80 N LEU B 11 -7.802 -4.905 13.407 1.00 1.71 \ ATOM 81 CA LEU B 11 -7.217 -3.602 13.689 1.00 1.71 \ ATOM 82 C LEU B 11 -8.057 -2.801 14.650 1.00 1.71 \ ATOM 83 O LEU B 11 -7.538 -2.197 15.571 1.00 1.71 \ ATOM 84 CB LEU B 11 -7.026 -2.829 12.394 1.00 1.71 \ ATOM 85 CG LEU B 11 -6.077 -1.622 12.500 1.00 1.71 \ ATOM 86 CD1 LEU B 11 -4.723 -1.869 13.178 1.00 1.71 \ ATOM 87 CD2 LEU B 11 -5.876 -1.111 11.085 1.00 1.71 \ ATOM 88 N VAL B 12 -9.351 -2.785 14.397 1.00 0.70 \ ATOM 89 CA VAL B 12 -10.350 -2.252 15.363 1.00 0.70 \ ATOM 90 C VAL B 12 -10.085 -2.805 16.747 1.00 0.70 \ ATOM 91 O VAL B 12 -9.962 -2.045 17.716 1.00 0.70 \ ATOM 92 CB VAL B 12 -11.801 -2.655 15.043 1.00 0.70 \ ATOM 93 CG1 VAL B 12 -12.779 -2.025 16.031 1.00 0.70 \ ATOM 94 CG2 VAL B 12 -12.211 -2.269 13.632 1.00 0.70 \ ATOM 95 N GLU B 13 -9.957 -4.122 16.809 1.00 0.66 \ ATOM 96 CA GLU B 13 -9.775 -4.849 18.073 1.00 0.66 \ ATOM 97 C GLU B 13 -8.426 -4.534 18.758 1.00 0.66 \ ATOM 98 O GLU B 13 -8.338 -4.494 19.951 1.00 0.66 \ ATOM 99 CB GLU B 13 -9.920 -6.382 17.861 1.00 0.66 \ ATOM 100 CG GLU B 13 -11.360 -6.900 17.742 1.00 0.66 \ ATOM 101 CD GLU B 13 -12.207 -6.447 18.913 1.00 0.66 \ ATOM 102 OE1 GLU B 13 -11.831 -6.769 20.086 1.00 0.66 \ ATOM 103 OE2 GLU B 13 -13.232 -5.712 18.659 1.00 0.66 \ ATOM 104 N ALA B 14 -7.369 -4.309 17.991 1.00 -0.03 \ ATOM 105 CA ALA B 14 -6.110 -3.833 18.561 1.00 -0.03 \ ATOM 106 C ALA B 14 -6.256 -2.440 19.186 1.00 -0.03 \ ATOM 107 O ALA B 14 -5.898 -2.195 20.340 1.00 -0.03 \ ATOM 108 CB ALA B 14 -5.013 -3.834 17.482 1.00 -0.03 \ ATOM 109 N LEU B 15 -6.769 -1.525 18.388 1.00 1.71 \ ATOM 110 CA LEU B 15 -7.176 -0.235 18.853 1.00 1.71 \ ATOM 111 C LEU B 15 -7.952 -0.335 20.185 1.00 1.71 \ ATOM 112 O LEU B 15 -7.544 0.215 21.169 1.00 1.71 \ ATOM 113 CB LEU B 15 -7.996 0.463 17.793 1.00 1.71 \ ATOM 114 CG LEU B 15 -7.193 1.024 16.638 1.00 1.71 \ ATOM 115 CD1 LEU B 15 -8.107 1.622 15.562 1.00 1.71 \ ATOM 116 CD2 LEU B 15 -6.188 2.053 17.123 1.00 1.71 \ ATOM 117 N TYR B 16 -9.023 -1.104 20.176 1.00 -0.22 \ ATOM 118 CA TYR B 16 -9.816 -1.354 21.390 1.00 -0.22 \ ATOM 119 C TYR B 16 -8.949 -1.700 22.593 1.00 -0.22 \ ATOM 120 O TYR B 16 -9.200 -1.229 23.712 1.00 -0.22 \ ATOM 121 CB TYR B 16 -10.802 -2.484 21.133 1.00 -0.22 \ ATOM 122 CG TYR B 16 -11.633 -2.865 22.305 1.00 -0.22 \ ATOM 123 CD1 TYR B 16 -12.771 -2.152 22.612 1.00 -0.22 \ ATOM 124 CD2 TYR B 16 -11.291 -3.948 23.139 1.00 -0.22 \ ATOM 125 CE1 TYR B 16 -13.550 -2.480 23.708 1.00 -0.22 \ ATOM 126 CE2 TYR B 16 -12.069 -4.269 24.240 1.00 -0.22 \ ATOM 127 CZ TYR B 16 -13.208 -3.535 24.513 1.00 -0.22 \ ATOM 128 OH TYR B 16 -14.024 -3.839 25.593 1.00 -0.22 \ ATOM 129 N LEU B 17 -7.931 -2.495 22.374 1.00 -0.23 \ ATOM 130 CA LEU B 17 -7.107 -2.954 23.484 1.00 -0.23 \ ATOM 131 C LEU B 17 -6.101 -1.918 23.885 1.00 -0.23 \ ATOM 132 O LEU B 17 -6.063 -1.555 25.057 1.00 -0.23 \ ATOM 133 CB LEU B 17 -6.425 -4.319 23.144 1.00 -0.23 \ ATOM 134 CG LEU B 17 -5.212 -4.826 23.937 1.00 -0.23 \ ATOM 135 CD1 LEU B 17 -5.616 -5.302 25.316 1.00 -0.23 \ ATOM 136 CD2 LEU B 17 -4.568 -5.991 23.172 1.00 -0.23 \ ATOM 137 N VAL B 18 -5.283 -1.435 22.942 1.00 0.24 \ ATOM 138 CA VAL B 18 -4.201 -0.541 23.304 1.00 0.24 \ ATOM 139 C VAL B 18 -4.821 0.783 23.754 1.00 0.24 \ ATOM 140 O VAL B 18 -4.262 1.420 24.592 1.00 0.24 \ ATOM 141 CB VAL B 18 -3.128 -0.315 22.180 1.00 0.24 \ ATOM 142 CG1 VAL B 18 -2.523 -1.635 21.708 1.00 0.24 \ ATOM 143 CG2 VAL B 18 -3.697 0.486 21.013 1.00 0.24 \ ATOM 144 N CYS B 19 -5.982 1.226 23.223 1.00 1.71 \ ATOM 145 CA CYS B 19 -6.384 2.599 23.551 1.00 1.71 \ ATOM 146 C CYS B 19 -7.077 2.603 24.883 1.00 1.71 \ ATOM 147 O CYS B 19 -7.089 3.660 25.553 1.00 1.71 \ ATOM 148 CB CYS B 19 -7.263 3.254 22.473 1.00 1.71 \ ATOM 149 SG CYS B 19 -6.375 3.419 20.878 1.00 1.71 \ ATOM 150 N GLY B 20 -7.589 1.444 25.295 1.00 -0.17 \ ATOM 151 CA GLY B 20 -8.319 1.321 26.570 1.00 -0.17 \ ATOM 152 C GLY B 20 -9.122 2.565 26.890 1.00 -0.17 \ ATOM 153 O GLY B 20 -9.936 3.021 26.058 1.00 -0.17 \ ATOM 154 N GLU B 21 -8.898 3.163 28.066 1.00 0.19 \ ATOM 155 CA GLU B 21 -9.707 4.304 28.483 1.00 0.19 \ ATOM 156 C GLU B 21 -9.560 5.520 27.605 1.00 0.19 \ ATOM 157 O GLU B 21 -10.439 6.384 27.653 1.00 0.19 \ ATOM 158 CB GLU B 21 -9.456 4.705 29.940 1.00 0.19 \ ATOM 159 CG GLU B 21 -10.173 3.819 30.953 1.00 0.19 \ ATOM 160 CD GLU B 21 -11.485 4.427 31.466 1.00 0.19 \ ATOM 161 OE1 GLU B 21 -12.075 5.320 30.774 1.00 0.19 \ ATOM 162 OE2 GLU B 21 -11.888 4.034 32.587 1.00 0.19 \ ATOM 163 N ARG B 22 -8.514 5.608 26.758 1.00 -0.62 \ ATOM 164 CA ARG B 22 -8.361 6.840 25.987 1.00 -0.62 \ ATOM 165 C ARG B 22 -9.388 6.961 24.882 1.00 -0.62 \ ATOM 166 O ARG B 22 -9.561 8.045 24.330 1.00 -0.62 \ ATOM 167 CB ARG B 22 -6.961 6.994 25.372 1.00 -0.62 \ ATOM 168 CG ARG B 22 -5.852 6.951 26.397 1.00 -0.62 \ ATOM 169 CD ARG B 22 -4.719 6.030 25.997 1.00 -0.62 \ ATOM 170 NE ARG B 22 -3.858 5.830 27.150 1.00 -0.62 \ ATOM 171 CZ ARG B 22 -3.035 6.756 27.651 1.00 -0.62 \ ATOM 172 NH1 ARG B 22 -2.892 7.974 27.083 1.00 -0.62 \ ATOM 173 NH2 ARG B 22 -2.316 6.464 28.719 1.00 -0.62 \ ATOM 174 N GLY B 23 -10.084 5.877 24.570 1.00 1.71 \ ATOM 175 CA GLY B 23 -10.790 5.783 23.311 1.00 1.71 \ ATOM 176 C GLY B 23 -9.994 5.926 22.042 1.00 1.71 \ ATOM 177 O GLY B 23 -8.751 5.951 22.038 1.00 1.71 \ ATOM 178 N PHE B 24 -10.739 5.950 20.958 1.00 1.12 \ ATOM 179 CA PHE B 24 -10.202 5.953 19.603 1.00 1.12 \ ATOM 180 C PHE B 24 -11.282 6.302 18.604 1.00 1.12 \ ATOM 181 O PHE B 24 -12.496 6.140 18.857 1.00 1.12 \ ATOM 182 CB PHE B 24 -9.463 4.628 19.217 1.00 1.12 \ ATOM 183 CG PHE B 24 -10.355 3.380 19.055 1.00 1.12 \ ATOM 184 CD1 PHE B 24 -10.646 2.579 20.152 1.00 1.12 \ ATOM 185 CD2 PHE B 24 -10.848 2.985 17.796 1.00 1.12 \ ATOM 186 CE1 PHE B 24 -11.418 1.424 20.056 1.00 1.12 \ ATOM 187 CE2 PHE B 24 -11.645 1.808 17.684 1.00 1.12 \ ATOM 188 CZ PHE B 24 -11.951 1.058 18.820 1.00 1.12 \ ATOM 189 N PHE B 25 -10.848 6.832 17.472 0.50 0.52 \ ATOM 190 CA PHE B 25 -11.739 7.066 16.382 0.50 0.52 \ ATOM 191 C PHE B 25 -11.312 6.167 15.278 0.50 0.52 \ ATOM 192 O PHE B 25 -10.135 6.135 14.995 0.50 0.52 \ ATOM 193 CB PHE B 25 -11.579 8.446 15.780 0.50 0.52 \ ATOM 194 CG PHE B 25 -12.127 8.501 14.408 0.50 0.52 \ ATOM 195 CD1 PHE B 25 -13.481 8.484 14.221 0.50 0.52 \ ATOM 196 CD2 PHE B 25 -11.299 8.399 13.295 0.50 0.52 \ ATOM 197 CE1 PHE B 25 -14.028 8.455 12.974 0.50 0.52 \ ATOM 198 CE2 PHE B 25 -11.847 8.384 12.029 0.50 0.52 \ ATOM 199 CZ PHE B 25 -13.216 8.409 11.869 0.50 0.52 \ ATOM 200 N TYR B 26 -12.259 5.559 14.568 1.00 -0.24 \ ATOM 201 CA TYR B 26 -11.863 4.643 13.471 1.00 -0.24 \ ATOM 202 C TYR B 26 -12.863 4.751 12.286 1.00 -0.24 \ ATOM 203 O TYR B 26 -14.042 4.991 12.512 1.00 -0.24 \ ATOM 204 CB TYR B 26 -11.798 3.230 14.039 1.00 -0.24 \ ATOM 205 CG TYR B 26 -11.373 2.213 13.022 1.00 -0.24 \ ATOM 206 CD1 TYR B 26 -10.047 1.961 12.783 1.00 -0.24 \ ATOM 207 CD2 TYR B 26 -12.316 1.573 12.252 1.00 -0.24 \ ATOM 208 CE1 TYR B 26 -9.654 1.042 11.811 1.00 -0.24 \ ATOM 209 CE2 TYR B 26 -11.953 0.673 11.284 1.00 -0.24 \ ATOM 210 CZ TYR B 26 -10.634 0.397 11.068 1.00 -0.24 \ ATOM 211 OH TYR B 26 -10.312 -0.527 10.108 1.00 -0.24 \ ATOM 219 N PRO B 28 -13.372 2.450 8.704 1.00 -1.07 \ ATOM 220 CA PRO B 28 -13.027 1.431 7.724 1.00 -1.07 \ ATOM 221 C PRO B 28 -13.335 1.919 6.333 1.00 -1.07 \ ATOM 222 O PRO B 28 -14.454 2.415 6.078 1.00 -1.07 \ ATOM 223 CB PRO B 28 -13.940 0.265 8.088 1.00 -1.07 \ ATOM 224 CG PRO B 28 -15.134 0.884 8.717 1.00 -1.07 \ ATOM 225 CD PRO B 28 -14.700 2.207 9.298 1.00 -1.07 \ """, "e5bpoB1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5bpoB1_csv", state=0, origin=1) cmd.zoom("e5bpoB1_csv", animate=-1)