cmd.read_pdbstr("""\ ATOM 1 N VAL D 2 7.649 8.326 19.092 1.00 -1.00 \ ATOM 2 CA VAL D 2 7.935 7.803 17.705 1.00 -1.00 \ ATOM 3 C VAL D 2 8.888 6.584 17.669 1.00 -1.00 \ ATOM 4 O VAL D 2 8.777 5.757 16.757 1.00 -1.00 \ ATOM 5 CB VAL D 2 8.472 8.928 16.764 1.00 -1.00 \ ATOM 6 CG1 VAL D 2 9.921 9.303 17.104 1.00 -1.00 \ ATOM 7 CG2 VAL D 2 8.315 8.532 15.288 1.00 -1.00 \ ATOM 8 N ASN D 3 9.824 6.500 18.631 1.00 -0.47 \ ATOM 9 CA ASN D 3 10.656 5.294 18.868 1.00 -0.47 \ ATOM 10 C ASN D 3 9.861 3.989 18.703 1.00 -0.47 \ ATOM 11 O ASN D 3 8.855 3.755 19.373 1.00 -0.47 \ ATOM 12 CB ASN D 3 11.297 5.338 20.275 1.00 -0.47 \ ATOM 13 CG ASN D 3 12.370 4.256 20.503 1.00 -0.47 \ ATOM 14 OD1 ASN D 3 12.923 3.680 19.565 1.00 -0.47 \ ATOM 15 ND2 ASN D 3 12.657 3.979 21.774 1.00 -0.47 \ ATOM 16 N GLN D 4 10.308 3.144 17.785 1.00 0.23 \ ATOM 17 CA GLN D 4 9.670 1.861 17.574 1.00 0.23 \ ATOM 18 C GLN D 4 10.005 0.948 18.761 1.00 0.23 \ ATOM 19 O GLN D 4 9.159 0.238 19.227 1.00 0.23 \ ATOM 20 CB GLN D 4 10.167 1.218 16.278 1.00 0.23 \ ATOM 21 CG GLN D 4 10.051 2.055 15.002 1.00 0.23 \ ATOM 22 CD GLN D 4 8.627 2.440 14.692 1.00 0.23 \ ATOM 23 OE1 GLN D 4 7.801 1.583 14.358 1.00 0.23 \ ATOM 24 NE2 GLN D 4 8.328 3.732 14.801 1.00 0.23 \ ATOM 25 N HIS D 5 11.225 1.060 19.288 1.00 -0.04 \ ATOM 26 CA HIS D 5 11.773 0.082 20.213 1.00 -0.04 \ ATOM 27 C HIS D 5 11.190 0.198 21.617 1.00 -0.04 \ ATOM 28 O HIS D 5 11.232 1.284 22.216 1.00 -0.04 \ ATOM 29 CB HIS D 5 13.292 0.209 20.285 1.00 -0.04 \ ATOM 30 CG HIS D 5 13.969 0.134 18.951 1.00 -0.04 \ ATOM 31 ND1 HIS D 5 14.493 -1.034 18.436 1.00 -0.04 \ ATOM 32 CD2 HIS D 5 14.209 1.089 18.025 1.00 -0.04 \ ATOM 33 CE1 HIS D 5 15.028 -0.788 17.252 1.00 -0.04 \ ATOM 34 NE2 HIS D 5 14.854 0.487 16.972 1.00 -0.04 \ ATOM 35 N LEU D 6 10.680 -0.909 22.136 1.00 1.14 \ ATOM 36 CA LEU D 6 10.291 -1.009 23.556 1.00 1.14 \ ATOM 37 C LEU D 6 11.402 -1.616 24.416 1.00 1.14 \ ATOM 38 O LEU D 6 11.635 -2.864 24.393 1.00 1.14 \ ATOM 39 CB LEU D 6 9.077 -1.884 23.690 1.00 1.14 \ ATOM 40 CG LEU D 6 7.865 -1.563 22.835 1.00 1.14 \ ATOM 41 CD1 LEU D 6 6.780 -2.585 23.116 1.00 1.14 \ ATOM 42 CD2 LEU D 6 7.419 -0.116 23.049 1.00 1.14 \ ATOM 43 N CYS D 7 12.036 -0.731 25.196 1.00 1.71 \ ATOM 44 CA CYS D 7 13.114 -1.060 26.078 1.00 1.71 \ ATOM 45 C CYS D 7 12.803 -0.895 27.572 1.00 1.71 \ ATOM 46 O CYS D 7 12.117 0.034 27.994 1.00 1.71 \ ATOM 47 CB CYS D 7 14.355 -0.306 25.639 1.00 1.71 \ ATOM 48 SG CYS D 7 14.845 -0.833 23.969 1.00 1.71 \ ATOM 49 N GLY D 8 13.341 -1.815 28.371 1.00 0.70 \ ATOM 50 CA GLY D 8 13.417 -1.592 29.781 1.00 0.70 \ ATOM 51 C GLY D 8 12.058 -1.616 30.442 1.00 0.70 \ ATOM 52 O GLY D 8 11.244 -2.439 30.122 1.00 0.70 \ ATOM 53 N SER D 9 11.805 -0.687 31.351 1.00 -0.48 \ ATOM 54 CA SER D 9 10.455 -0.642 32.018 1.00 -0.48 \ ATOM 55 C SER D 9 9.322 -0.278 31.038 1.00 -0.48 \ ATOM 56 O SER D 9 8.134 -0.508 31.333 1.00 -0.48 \ ATOM 57 CB SER D 9 10.475 0.178 33.313 1.00 -0.48 \ ATOM 58 OG SER D 9 9.402 1.099 33.437 1.00 -0.48 \ ATOM 59 N HIS D 10 9.664 0.195 29.836 1.00 -0.23 \ ATOM 60 CA HIS D 10 8.604 0.414 28.816 1.00 -0.23 \ ATOM 61 C HIS D 10 8.050 -0.862 28.232 1.00 -0.23 \ ATOM 62 O HIS D 10 6.871 -0.914 27.868 1.00 -0.23 \ ATOM 63 CB HIS D 10 9.046 1.397 27.728 1.00 -0.23 \ ATOM 64 CG HIS D 10 9.193 2.784 28.261 1.00 -0.23 \ ATOM 65 ND1 HIS D 10 9.935 3.754 27.636 1.00 -0.23 \ ATOM 66 CD2 HIS D 10 8.718 3.351 29.399 1.00 -0.23 \ ATOM 67 CE1 HIS D 10 9.900 4.865 28.347 1.00 -0.23 \ ATOM 68 NE2 HIS D 10 9.184 4.642 29.432 1.00 -0.23 \ ATOM 69 N LEU D 11 8.894 -1.887 28.176 1.00 1.71 \ ATOM 70 CA LEU D 11 8.496 -3.222 27.706 1.00 1.71 \ ATOM 71 C LEU D 11 7.505 -3.933 28.694 1.00 1.71 \ ATOM 72 O LEU D 11 6.400 -4.501 28.322 1.00 1.71 \ ATOM 73 CB LEU D 11 9.836 -3.975 27.428 1.00 1.71 \ ATOM 74 CG LEU D 11 9.887 -5.268 26.659 1.00 1.71 \ ATOM 75 CD1 LEU D 11 8.957 -5.188 25.451 1.00 1.71 \ ATOM 76 CD2 LEU D 11 11.353 -5.578 26.306 1.00 1.71 \ ATOM 77 N VAL D 12 7.829 -3.840 29.970 1.00 0.70 \ ATOM 78 CA VAL D 12 7.007 -4.442 31.019 1.00 0.70 \ ATOM 79 C VAL D 12 5.626 -3.757 31.052 1.00 0.70 \ ATOM 80 O VAL D 12 4.581 -4.434 31.126 1.00 0.70 \ ATOM 81 CB VAL D 12 7.734 -4.423 32.375 1.00 0.70 \ ATOM 82 CG1 VAL D 12 6.921 -5.180 33.395 1.00 0.70 \ ATOM 83 CG2 VAL D 12 9.102 -5.073 32.232 1.00 0.70 \ ATOM 84 N GLU D 13 5.635 -2.428 30.890 1.00 0.66 \ ATOM 85 CA GLU D 13 4.433 -1.592 30.723 1.00 0.66 \ ATOM 86 C GLU D 13 3.624 -1.949 29.491 1.00 0.66 \ ATOM 87 O GLU D 13 2.403 -1.991 29.572 1.00 0.66 \ ATOM 88 CB GLU D 13 4.742 -0.085 30.585 1.00 0.66 \ ATOM 89 CG GLU D 13 5.083 0.664 31.880 1.00 0.66 \ ATOM 90 CD GLU D 13 3.925 0.687 32.907 1.00 0.66 \ ATOM 91 OE1 GLU D 13 2.720 0.676 32.539 1.00 0.66 \ ATOM 92 OE2 GLU D 13 4.246 0.760 34.110 1.00 0.66 \ ATOM 93 N ALA D 14 4.294 -2.149 28.347 1.00 -0.03 \ ATOM 94 CA ALA D 14 3.567 -2.594 27.151 1.00 -0.03 \ ATOM 95 C ALA D 14 2.827 -3.931 27.367 1.00 -0.03 \ ATOM 96 O ALA D 14 1.649 -4.096 26.955 1.00 -0.03 \ ATOM 97 CB ALA D 14 4.545 -2.697 26.002 1.00 -0.03 \ ATOM 98 N LEU D 15 3.498 -4.865 28.055 1.00 1.71 \ ATOM 99 CA LEU D 15 2.931 -6.185 28.411 1.00 1.71 \ ATOM 100 C LEU D 15 1.800 -6.076 29.410 1.00 1.71 \ ATOM 101 O LEU D 15 0.720 -6.673 29.241 1.00 1.71 \ ATOM 102 CB LEU D 15 4.008 -7.088 29.068 1.00 1.71 \ ATOM 103 CG LEU D 15 5.144 -7.689 28.232 1.00 1.71 \ ATOM 104 CD1 LEU D 15 6.079 -8.449 29.137 1.00 1.71 \ ATOM 105 CD2 LEU D 15 4.582 -8.614 27.149 1.00 1.71 \ ATOM 106 N TYR D 16 2.024 -5.340 30.472 1.00 -0.22 \ ATOM 107 CA TYR D 16 0.883 -4.944 31.333 1.00 -0.22 \ ATOM 108 C TYR D 16 -0.394 -4.618 30.529 1.00 -0.22 \ ATOM 109 O TYR D 16 -1.439 -5.228 30.755 1.00 -0.22 \ ATOM 110 CB TYR D 16 1.259 -3.775 32.215 1.00 -0.22 \ ATOM 111 CG TYR D 16 0.219 -3.369 33.179 1.00 -0.22 \ ATOM 112 CD1 TYR D 16 -0.281 -4.284 34.107 1.00 -0.22 \ ATOM 113 CD2 TYR D 16 -0.308 -2.062 33.177 1.00 -0.22 \ ATOM 114 CE1 TYR D 16 -1.260 -3.906 35.018 1.00 -0.22 \ ATOM 115 CE2 TYR D 16 -1.311 -1.705 34.045 1.00 -0.22 \ ATOM 116 CZ TYR D 16 -1.751 -2.624 34.978 1.00 -0.22 \ ATOM 117 OH TYR D 16 -2.723 -2.299 35.856 1.00 -0.22 \ ATOM 118 N LEU D 17 -0.266 -3.671 29.600 1.00 -0.23 \ ATOM 119 CA LEU D 17 -1.328 -3.241 28.696 1.00 -0.23 \ ATOM 120 C LEU D 17 -1.950 -4.406 27.902 1.00 -0.23 \ ATOM 121 O LEU D 17 -3.161 -4.754 28.082 1.00 -0.23 \ ATOM 122 CB LEU D 17 -0.847 -2.059 27.771 1.00 -0.23 \ ATOM 123 CG LEU D 17 -1.833 -1.412 26.791 1.00 -0.23 \ ATOM 124 CD1 LEU D 17 -3.108 -0.896 27.483 1.00 -0.23 \ ATOM 125 CD2 LEU D 17 -1.145 -0.353 25.914 1.00 -0.23 \ ATOM 126 N VAL D 18 -1.162 -4.978 27.001 1.00 0.24 \ ATOM 127 CA VAL D 18 -1.704 -5.872 25.985 1.00 0.24 \ ATOM 128 C VAL D 18 -2.079 -7.260 26.528 1.00 0.24 \ ATOM 129 O VAL D 18 -2.954 -7.920 25.931 1.00 0.24 \ ATOM 130 CB VAL D 18 -0.771 -6.009 24.740 1.00 0.24 \ ATOM 131 CG1 VAL D 18 -0.470 -4.626 24.160 1.00 0.24 \ ATOM 132 CG2 VAL D 18 0.483 -6.830 25.047 1.00 0.24 \ ATOM 133 N CYS D 19 -1.499 -7.695 27.652 1.00 1.71 \ ATOM 134 CA CYS D 19 -1.869 -9.002 28.227 1.00 1.71 \ ATOM 135 C CYS D 19 -3.110 -9.012 29.091 1.00 1.71 \ ATOM 136 O CYS D 19 -3.731 -10.074 29.206 1.00 1.71 \ ATOM 137 CB CYS D 19 -0.726 -9.564 29.040 1.00 1.71 \ ATOM 138 SG CYS D 19 0.728 -9.774 28.006 1.00 1.71 \ ATOM 139 N GLY D 20 -3.444 -7.856 29.653 1.00 -0.17 \ ATOM 140 CA GLY D 20 -4.656 -7.655 30.493 1.00 -0.17 \ ATOM 141 C GLY D 20 -4.833 -8.752 31.519 1.00 -0.17 \ ATOM 142 O GLY D 20 -3.921 -9.019 32.315 1.00 -0.17 \ ATOM 143 N GLU D 21 -5.939 -9.479 31.409 1.00 0.19 \ ATOM 144 CA GLU D 21 -6.290 -10.461 32.425 1.00 0.19 \ ATOM 145 C GLU D 21 -5.559 -11.814 32.269 1.00 0.19 \ ATOM 146 O GLU D 21 -5.672 -12.683 33.125 1.00 0.19 \ ATOM 147 CB GLU D 21 -7.812 -10.631 32.481 1.00 0.19 \ ATOM 148 CG GLU D 21 -8.414 -10.477 33.886 1.00 0.19 \ ATOM 149 CD GLU D 21 -7.989 -9.211 34.648 1.00 0.19 \ ATOM 150 OE1 GLU D 21 -7.682 -8.169 34.015 1.00 0.19 \ ATOM 151 OE2 GLU D 21 -7.963 -9.260 35.901 1.00 0.19 \ ATOM 152 N ARG D 22 -4.835 -12.018 31.180 1.00 -0.62 \ ATOM 153 CA ARG D 22 -3.885 -13.150 31.123 1.00 -0.62 \ ATOM 154 C ARG D 22 -2.626 -12.872 31.967 1.00 -0.62 \ ATOM 155 O ARG D 22 -2.005 -13.779 32.530 1.00 -0.62 \ ATOM 156 CB ARG D 22 -3.485 -13.460 29.673 1.00 -0.62 \ ATOM 157 CG ARG D 22 -4.617 -14.015 28.828 1.00 -0.62 \ ATOM 158 N GLY D 23 -2.215 -11.616 32.050 1.00 1.71 \ ATOM 159 CA GLY D 23 -0.898 -11.326 32.651 1.00 1.71 \ ATOM 160 C GLY D 23 0.199 -12.028 31.856 1.00 1.71 \ ATOM 161 O GLY D 23 -0.043 -12.488 30.735 1.00 1.71 \ ATOM 162 N PHE D 24 1.399 -12.122 32.418 1.00 1.12 \ ATOM 163 CA PHE D 24 2.572 -12.442 31.610 1.00 1.12 \ ATOM 164 C PHE D 24 3.814 -12.838 32.392 1.00 1.12 \ ATOM 165 O PHE D 24 3.885 -12.605 33.582 1.00 1.12 \ ATOM 166 CB PHE D 24 2.936 -11.209 30.767 1.00 1.12 \ ATOM 167 CG PHE D 24 3.251 -9.978 31.589 1.00 1.12 \ ATOM 168 CD1 PHE D 24 2.255 -9.122 31.998 1.00 1.12 \ ATOM 169 CD2 PHE D 24 4.570 -9.678 31.944 1.00 1.12 \ ATOM 170 CE1 PHE D 24 2.550 -7.988 32.733 1.00 1.12 \ ATOM 171 CE2 PHE D 24 4.882 -8.572 32.683 1.00 1.12 \ ATOM 172 CZ PHE D 24 3.862 -7.730 33.109 1.00 1.12 \ ATOM 173 N PHE D 25 4.808 -13.370 31.664 1.00 0.52 \ ATOM 174 CA PHE D 25 6.107 -13.652 32.228 0.50 0.52 \ ATOM 175 C PHE D 25 7.153 -12.741 31.577 1.00 0.52 \ ATOM 176 O PHE D 25 7.340 -12.758 30.385 1.00 0.52 \ ATOM 177 CB PHE D 25 6.422 -15.155 32.057 0.50 0.52 \ ATOM 178 CG PHE D 25 7.750 -15.567 32.617 0.50 0.52 \ ATOM 179 CD1 PHE D 25 8.102 -15.243 33.912 0.50 0.52 \ ATOM 180 CD2 PHE D 25 8.645 -16.283 31.854 0.50 0.52 \ ATOM 181 CE1 PHE D 25 9.341 -15.582 34.420 0.50 0.52 \ ATOM 182 CE2 PHE D 25 9.877 -16.658 32.371 0.50 0.52 \ ATOM 183 CZ PHE D 25 10.223 -16.302 33.650 0.50 0.52 \ ATOM 184 N TYR D 26 7.848 -11.957 32.388 1.00 -0.24 \ ATOM 185 CA TYR D 26 8.902 -11.087 31.896 1.00 -0.24 \ ATOM 186 C TYR D 26 10.232 -11.579 32.451 1.00 -0.24 \ ATOM 187 O TYR D 26 10.334 -11.778 33.643 1.00 -0.24 \ ATOM 188 CB TYR D 26 8.679 -9.610 32.283 1.00 -0.24 \ ATOM 189 CG TYR D 26 9.894 -8.744 31.945 1.00 -0.24 \ ATOM 190 CD1 TYR D 26 10.084 -8.270 30.662 1.00 -0.24 \ ATOM 191 CD2 TYR D 26 10.877 -8.524 32.865 1.00 -0.24 \ ATOM 192 CE1 TYR D 26 11.207 -7.541 30.311 1.00 -0.24 \ ATOM 193 CE2 TYR D 26 12.028 -7.801 32.541 1.00 -0.24 \ ATOM 194 CZ TYR D 26 12.189 -7.313 31.260 1.00 -0.24 \ ATOM 195 OH TYR D 26 13.313 -6.582 30.932 1.00 -0.24 \ ATOM 203 N PRO D 28 14.555 -10.522 31.653 1.00 -1.07 \ ATOM 204 CA PRO D 28 15.439 -9.747 30.786 1.00 -1.07 \ ATOM 205 C PRO D 28 16.487 -10.632 30.108 1.00 -1.07 \ ATOM 206 O PRO D 28 16.650 -10.560 28.899 1.00 -1.07 \ ATOM 207 CB PRO D 28 16.065 -8.704 31.734 1.00 -1.07 \ ATOM 208 CG PRO D 28 15.954 -9.289 33.092 1.00 -1.07 \ ATOM 209 CD PRO D 28 14.735 -10.172 33.079 1.00 -1.07 \ """, "e5bpoD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5bpoD1_csv", state=0, origin=1) cmd.zoom("e5bpoD1_csv", animate=-1)