cmd.read_pdbstr("""\ ATOM 1 N PHE B 1 -19.497 24.015 17.482 1.00 -1.00 \ ATOM 2 CA PHE B 1 -19.202 23.348 16.150 1.00 -1.00 \ ATOM 3 C PHE B 1 -18.087 24.172 15.464 1.00 -1.00 \ ATOM 4 O PHE B 1 -17.639 25.203 15.915 1.00 -1.00 \ ATOM 5 CB PHE B 1 -20.461 23.171 15.303 1.00 -1.00 \ ATOM 6 CG PHE B 1 -20.310 22.232 14.168 1.00 -1.00 \ ATOM 7 CD1 PHE B 1 -19.970 20.894 14.405 1.00 -1.00 \ ATOM 8 CD2 PHE B 1 -20.495 22.676 12.821 1.00 -1.00 \ ATOM 9 CE1 PHE B 1 -19.759 20.037 13.335 1.00 -1.00 \ ATOM 10 CE2 PHE B 1 -20.233 21.830 11.770 1.00 -1.00 \ ATOM 11 CZ PHE B 1 -19.869 20.502 12.036 1.00 -1.00 \ ATOM 12 N VAL B 2 -17.552 23.567 14.371 1.00 -1.00 \ ATOM 13 CA VAL B 2 -16.412 24.098 13.656 1.00 -1.00 \ ATOM 14 C VAL B 2 -16.699 24.404 12.198 1.00 -1.00 \ ATOM 15 O VAL B 2 -15.812 24.228 11.339 1.00 -1.00 \ ATOM 16 CB VAL B 2 -15.197 23.149 13.805 1.00 -1.00 \ ATOM 17 CG1 VAL B 2 -14.795 23.085 15.281 1.00 -1.00 \ ATOM 18 CG2 VAL B 2 -15.509 21.749 13.257 1.00 -1.00 \ ATOM 19 N ASN B 3 -17.909 24.801 11.888 1.00 -0.46 \ ATOM 20 CA ASN B 3 -18.287 24.970 10.494 1.00 -0.46 \ ATOM 21 C ASN B 3 -17.469 26.000 9.740 1.00 -0.46 \ ATOM 22 O ASN B 3 -17.337 25.799 8.498 1.00 -0.46 \ ATOM 23 CB ASN B 3 -19.769 25.371 10.380 1.00 -0.46 \ ATOM 24 CG ASN B 3 -20.517 24.542 9.471 1.00 -0.46 \ ATOM 25 OD1 ASN B 3 -19.944 23.733 8.712 1.00 -0.46 \ ATOM 26 ND2 ASN B 3 -21.882 24.719 9.473 1.00 -0.46 \ ATOM 27 N GLN B 4 -17.068 27.091 10.350 1.00 0.23 \ ATOM 28 CA GLN B 4 -16.227 28.060 9.608 1.00 0.23 \ ATOM 29 C GLN B 4 -14.898 27.416 9.241 1.00 0.23 \ ATOM 30 O GLN B 4 -14.376 27.658 8.104 1.00 0.23 \ ATOM 31 CB GLN B 4 -16.024 29.367 10.363 1.00 0.23 \ ATOM 32 CG GLN B 4 -17.400 30.102 10.516 1.00 0.23 \ ATOM 33 CD GLN B 4 -17.261 31.460 11.154 1.00 0.23 \ ATOM 34 OE1 GLN B 4 -16.168 32.072 11.101 1.00 0.23 \ ATOM 35 NE2 GLN B 4 -18.344 31.962 11.733 1.00 0.23 \ ATOM 36 N HIS B 5 -14.346 26.560 10.090 1.00 -0.05 \ ATOM 37 CA HIS B 5 -13.110 25.772 9.774 0.50 -0.05 \ ATOM 38 C HIS B 5 -13.381 24.857 8.604 1.00 -0.05 \ ATOM 39 O HIS B 5 -12.526 24.742 7.684 1.00 -0.05 \ ATOM 40 CB HIS B 5 -12.623 24.926 10.969 0.50 -0.05 \ ATOM 41 CG HIS B 5 -11.427 24.041 10.663 0.50 -0.05 \ ATOM 42 ND1 HIS B 5 -10.138 24.469 10.878 0.50 -0.05 \ ATOM 43 CD2 HIS B 5 -11.325 22.784 10.131 0.50 -0.05 \ ATOM 44 CE1 HIS B 5 -9.297 23.495 10.579 0.50 -0.05 \ ATOM 45 NE2 HIS B 5 -9.975 22.479 10.070 0.50 -0.05 \ ATOM 46 N LEU B 6 -14.463 24.130 8.636 1.00 1.11 \ ATOM 47 CA LEU B 6 -14.818 23.195 7.560 1.00 1.11 \ ATOM 48 C LEU B 6 -14.987 23.975 6.265 1.00 1.11 \ ATOM 49 O LEU B 6 -14.471 23.539 5.235 1.00 1.11 \ ATOM 50 CB LEU B 6 -16.049 22.352 7.907 1.00 1.11 \ ATOM 51 CG LEU B 6 -15.972 21.497 9.220 1.00 1.11 \ ATOM 52 CD1 LEU B 6 -17.273 20.825 9.427 1.00 1.11 \ ATOM 53 CD2 LEU B 6 -14.804 20.571 9.239 1.00 1.11 \ ATOM 54 N CYS B 7 -15.766 25.041 6.290 1.00 1.72 \ ATOM 55 CA CYS B 7 -15.991 25.802 5.038 1.00 1.72 \ ATOM 56 C CYS B 7 -14.641 26.289 4.500 1.00 1.72 \ ATOM 57 O CYS B 7 -14.399 26.186 3.291 1.00 1.72 \ ATOM 58 CB CYS B 7 -16.982 26.913 5.337 1.00 1.72 \ ATOM 59 SG CYS B 7 -17.221 27.994 3.878 1.00 1.72 \ ATOM 60 N GLY B 8 -13.770 26.819 5.338 1.00 0.65 \ ATOM 61 CA GLY B 8 -12.448 27.317 4.883 1.00 0.65 \ ATOM 62 C GLY B 8 -11.657 26.240 4.184 1.00 0.65 \ ATOM 63 O GLY B 8 -10.979 26.541 3.200 1.00 0.65 \ ATOM 64 N SER B 9 -11.738 24.995 4.608 1.00 -0.48 \ ATOM 65 CA SER B 9 -11.051 23.893 3.891 1.00 -0.48 \ ATOM 66 C SER B 9 -11.533 23.761 2.482 1.00 -0.48 \ ATOM 67 O SER B 9 -10.740 23.571 1.515 1.00 -0.48 \ ATOM 68 CB SER B 9 -11.275 22.527 4.621 1.00 -0.48 \ ATOM 69 OG SER B 9 -10.811 21.423 3.886 0.50 -0.48 \ ATOM 70 N HIS B 10 -12.842 23.845 2.280 1.00 -0.22 \ ATOM 71 CA HIS B 10 -13.408 23.770 0.933 1.00 -0.22 \ ATOM 72 C HIS B 10 -13.049 25.036 0.100 1.00 -0.22 \ ATOM 73 O HIS B 10 -12.823 24.940 -1.124 1.00 -0.22 \ ATOM 74 CB HIS B 10 -14.922 23.556 0.972 1.00 -0.22 \ ATOM 75 CG HIS B 10 -15.300 22.227 1.498 1.00 -0.22 \ ATOM 76 ND1 HIS B 10 -15.461 21.134 0.692 1.00 -0.22 \ ATOM 77 CD2 HIS B 10 -15.472 21.801 2.757 1.00 -0.22 \ ATOM 78 CE1 HIS B 10 -15.806 20.090 1.443 1.00 -0.22 \ ATOM 79 NE2 HIS B 10 -15.819 20.490 2.687 1.00 -0.22 \ ATOM 80 N LEU B 11 -13.023 26.187 0.743 1.00 1.72 \ ATOM 81 CA LEU B 11 -12.602 27.412 0.034 1.00 1.72 \ ATOM 82 C LEU B 11 -11.210 27.316 -0.518 1.00 1.72 \ ATOM 83 O LEU B 11 -10.944 27.759 -1.656 1.00 1.72 \ ATOM 84 CB LEU B 11 -12.742 28.658 0.903 1.00 1.72 \ ATOM 85 CG LEU B 11 -14.177 29.131 1.179 1.00 1.72 \ ATOM 86 CD1 LEU B 11 -14.118 30.202 2.252 1.00 1.72 \ ATOM 87 CD2 LEU B 11 -14.881 29.623 -0.042 1.00 1.72 \ ATOM 88 N VAL B 12 -10.285 26.801 0.284 1.00 0.65 \ ATOM 89 CA VAL B 12 -8.883 26.759 -0.222 1.00 0.65 \ ATOM 90 C VAL B 12 -8.781 25.756 -1.379 1.00 0.65 \ ATOM 91 O VAL B 12 -8.042 26.025 -2.356 1.00 0.65 \ ATOM 92 CB VAL B 12 -7.811 26.549 0.841 1.00 0.65 \ ATOM 93 CG1 VAL B 12 -7.755 27.711 1.790 1.00 0.65 \ ATOM 94 CG2 VAL B 12 -7.994 25.343 1.526 1.00 0.65 \ ATOM 95 N GLU B 13 -9.522 24.654 -1.357 1.00 0.69 \ ATOM 96 CA GLU B 13 -9.569 23.746 -2.521 1.00 0.69 \ ATOM 97 C GLU B 13 -10.140 24.422 -3.723 1.00 0.69 \ ATOM 98 O GLU B 13 -9.628 24.237 -4.822 1.00 0.69 \ ATOM 99 CB GLU B 13 -10.299 22.455 -2.204 1.00 0.69 \ ATOM 100 CG GLU B 13 -10.445 21.495 -3.394 1.00 0.69 \ ATOM 101 CD GLU B 13 -9.135 21.073 -4.145 1.00 0.69 \ ATOM 102 OE1 GLU B 13 -9.166 21.064 -5.432 1.00 0.69 \ ATOM 103 OE2 GLU B 13 -8.070 20.889 -3.463 1.00 0.69 \ ATOM 104 N ALA B 14 -11.173 25.216 -3.519 1.00 -0.05 \ ATOM 105 CA ALA B 14 -11.791 25.953 -4.653 1.00 -0.05 \ ATOM 106 C ALA B 14 -10.818 27.003 -5.206 1.00 -0.05 \ ATOM 107 O ALA B 14 -10.738 27.128 -6.451 1.00 -0.05 \ ATOM 108 CB ALA B 14 -13.063 26.630 -4.188 1.00 -0.05 \ ATOM 109 N LEU B 15 -10.156 27.771 -4.369 1.00 1.72 \ ATOM 110 CA LEU B 15 -9.169 28.772 -4.866 1.00 1.72 \ ATOM 111 C LEU B 15 -8.039 28.062 -5.592 1.00 1.72 \ ATOM 112 O LEU B 15 -7.554 28.523 -6.600 1.00 1.72 \ ATOM 113 CB LEU B 15 -8.590 29.567 -3.738 1.00 1.72 \ ATOM 114 CG LEU B 15 -9.594 30.518 -3.045 1.00 1.72 \ ATOM 115 CD1 LEU B 15 -8.939 31.177 -1.893 1.00 1.72 \ ATOM 116 CD2 LEU B 15 -10.196 31.515 -4.045 1.00 1.72 \ ATOM 117 N TYR B 16 -7.623 26.904 -5.081 1.00 -0.23 \ ATOM 118 CA TYR B 16 -6.542 26.152 -5.772 1.00 -0.23 \ ATOM 119 C TYR B 16 -6.948 25.887 -7.221 1.00 -0.23 \ ATOM 120 O TYR B 16 -6.121 26.072 -8.163 1.00 -0.23 \ ATOM 121 CB TYR B 16 -6.234 24.818 -5.011 1.00 -0.23 \ ATOM 122 CG TYR B 16 -5.191 23.935 -5.685 1.00 -0.23 \ ATOM 123 CD1 TYR B 16 -3.831 24.272 -5.573 1.00 -0.23 \ ATOM 124 CD2 TYR B 16 -5.516 22.854 -6.366 1.00 -0.23 \ ATOM 125 CE1 TYR B 16 -2.873 23.494 -6.187 1.00 -0.23 \ ATOM 126 CE2 TYR B 16 -4.538 22.107 -7.010 1.00 -0.23 \ ATOM 127 CZ TYR B 16 -3.241 22.430 -6.899 1.00 -0.23 \ ATOM 128 OH TYR B 16 -2.250 21.676 -7.527 1.00 -0.23 \ ATOM 129 N LEU B 17 -8.173 25.451 -7.426 1.00 -0.22 \ ATOM 130 CA LEU B 17 -8.667 25.115 -8.779 1.00 -0.22 \ ATOM 131 C LEU B 17 -8.866 26.412 -9.590 1.00 -0.22 \ ATOM 132 O LEU B 17 -8.408 26.493 -10.736 1.00 -0.22 \ ATOM 133 CB LEU B 17 -9.963 24.355 -8.685 1.00 -0.22 \ ATOM 134 CG LEU B 17 -10.693 24.015 -9.980 1.00 -0.22 \ ATOM 135 CD1 LEU B 17 -9.893 23.045 -10.836 1.00 -0.22 \ ATOM 136 CD2 LEU B 17 -12.093 23.548 -9.716 1.00 -0.22 \ ATOM 137 N VAL B 18 -9.578 27.372 -9.038 1.00 0.22 \ ATOM 138 CA VAL B 18 -9.936 28.566 -9.793 1.00 0.22 \ ATOM 139 C VAL B 18 -8.743 29.415 -10.131 1.00 0.22 \ ATOM 140 O VAL B 18 -8.679 29.990 -11.236 1.00 0.22 \ ATOM 141 CB VAL B 18 -10.970 29.343 -8.915 1.00 0.22 \ ATOM 142 CG1 VAL B 18 -11.078 30.771 -9.317 1.00 0.22 \ ATOM 143 CG2 VAL B 18 -12.317 28.626 -8.813 1.00 0.22 \ ATOM 144 N CYS B 19 -7.800 29.553 -9.203 1.00 1.72 \ ATOM 145 CA CYS B 19 -6.709 30.526 -9.351 1.00 1.72 \ ATOM 146 C CYS B 19 -5.669 29.995 -10.309 1.00 1.72 \ ATOM 147 O CYS B 19 -4.979 30.812 -10.910 1.00 1.72 \ ATOM 148 CB CYS B 19 -6.157 30.984 -8.013 1.00 1.72 \ ATOM 149 SG CYS B 19 -7.401 31.802 -7.028 1.00 1.72 \ ATOM 150 N GLY B 20 -5.532 28.675 -10.430 1.00 -0.22 \ ATOM 151 CA GLY B 20 -4.549 28.049 -11.366 1.00 -0.22 \ ATOM 152 C GLY B 20 -3.146 28.549 -11.095 1.00 -0.22 \ ATOM 153 O GLY B 20 -2.723 28.662 -9.950 1.00 -0.22 \ ATOM 154 N GLU B 21 -2.432 28.936 -12.166 1.00 0.20 \ ATOM 155 CA GLU B 21 -1.064 29.417 -12.029 1.00 0.20 \ ATOM 156 C GLU B 21 -0.938 30.722 -11.252 1.00 0.20 \ ATOM 157 O GLU B 21 0.147 31.010 -10.762 1.00 0.20 \ ATOM 158 CB GLU B 21 -0.384 29.552 -13.426 1.00 0.20 \ ATOM 159 CG GLU B 21 -0.294 28.252 -14.191 1.00 0.20 \ ATOM 160 N ARG B 22 -1.990 31.524 -11.135 1.00 -0.65 \ ATOM 161 CA ARG B 22 -1.959 32.799 -10.368 1.00 -0.65 \ ATOM 162 C ARG B 22 -1.660 32.458 -8.886 1.00 -0.65 \ ATOM 163 O ARG B 22 -1.001 33.199 -8.163 1.00 -0.65 \ ATOM 164 CB ARG B 22 -3.297 33.572 -10.428 1.00 -0.65 \ ATOM 165 CG ARG B 22 -3.675 34.381 -11.696 1.00 -0.65 \ ATOM 166 CD ARG B 22 -5.113 34.864 -11.717 1.00 -0.65 \ ATOM 167 NE ARG B 22 -6.069 33.779 -11.978 1.00 -0.65 \ ATOM 168 CZ ARG B 22 -7.374 33.928 -12.124 1.00 -0.65 \ ATOM 169 NH1 ARG B 22 -7.911 35.151 -11.979 1.00 -0.65 \ ATOM 170 NH2 ARG B 22 -8.164 32.860 -12.342 1.00 -0.65 \ ATOM 171 N GLY B 23 -2.200 31.338 -8.414 1.00 1.72 \ ATOM 172 CA GLY B 23 -2.121 31.076 -6.978 1.00 1.72 \ ATOM 173 C GLY B 23 -3.011 32.016 -6.158 1.00 1.72 \ ATOM 174 O GLY B 23 -3.819 32.812 -6.671 1.00 1.72 \ ATOM 175 N PHE B 24 -2.912 31.861 -4.825 1.00 1.10 \ ATOM 176 CA PHE B 24 -3.668 32.649 -3.867 1.00 1.10 \ ATOM 177 C PHE B 24 -2.972 32.851 -2.501 1.00 1.10 \ ATOM 178 O PHE B 24 -2.142 32.098 -2.064 1.00 1.10 \ ATOM 179 CB PHE B 24 -5.054 32.020 -3.688 1.00 1.10 \ ATOM 180 CG PHE B 24 -5.021 30.622 -3.116 1.00 1.10 \ ATOM 181 CD1 PHE B 24 -4.838 29.528 -3.907 1.00 1.10 \ ATOM 182 CD2 PHE B 24 -5.219 30.417 -1.757 1.00 1.10 \ ATOM 183 CE1 PHE B 24 -4.743 28.261 -3.367 1.00 1.10 \ ATOM 184 CE2 PHE B 24 -5.163 29.154 -1.227 1.00 1.10 \ ATOM 185 CZ PHE B 24 -4.958 28.070 -2.033 1.00 1.10 \ ATOM 186 N PHE B 25 -3.487 33.818 -1.736 1.00 0.52 \ ATOM 187 CA PHE B 25 -3.102 34.028 -0.365 1.00 0.52 \ ATOM 188 C PHE B 25 -4.326 33.671 0.456 1.00 0.52 \ ATOM 189 O PHE B 25 -5.445 34.071 0.120 1.00 0.52 \ ATOM 190 CB PHE B 25 -2.744 35.537 -0.206 1.00 0.52 \ ATOM 191 CG PHE B 25 -2.376 35.963 1.161 0.67 0.52 \ ATOM 192 CD1 PHE B 25 -1.070 35.869 1.609 0.67 0.52 \ ATOM 193 CD2 PHE B 25 -3.327 36.570 1.988 0.67 0.52 \ ATOM 194 CE1 PHE B 25 -0.724 36.312 2.881 0.67 0.52 \ ATOM 195 CE2 PHE B 25 -2.990 37.021 3.255 0.67 0.52 \ ATOM 196 CZ PHE B 25 -1.678 36.890 3.702 0.67 0.52 \ ATOM 197 N TYR B 26 -4.140 32.896 1.509 1.00 -0.25 \ ATOM 198 CA TYR B 26 -5.251 32.650 2.429 1.00 -0.25 \ ATOM 199 C TYR B 26 -4.828 33.071 3.836 1.00 -0.25 \ ATOM 200 O TYR B 26 -3.819 32.604 4.321 1.00 -0.25 \ ATOM 201 CB TYR B 26 -5.696 31.161 2.361 1.00 -0.25 \ ATOM 202 CG TYR B 26 -6.816 30.889 3.304 1.00 -0.25 \ ATOM 203 CD1 TYR B 26 -8.147 31.252 3.005 1.00 -0.25 \ ATOM 204 CD2 TYR B 26 -6.534 30.378 4.578 1.00 -0.25 \ ATOM 205 CE1 TYR B 26 -9.184 31.021 3.961 1.00 -0.25 \ ATOM 206 CE2 TYR B 26 -7.527 30.211 5.531 1.00 -0.25 \ ATOM 207 CZ TYR B 26 -8.845 30.486 5.224 1.00 -0.25 \ ATOM 208 OH TYR B 26 -9.762 30.254 6.268 1.00 -0.25 \ """, "e5bqqB1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5bqqB1_csv", state=0, origin=1) cmd.zoom("e5bqqB1_csv", animate=-1)