cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 0.105 12.751 -17.513 1.00 -1.00 \ ATOM 2 CA PHE D 1 -0.672 12.663 -16.220 1.00 -1.00 \ ATOM 3 C PHE D 1 -0.552 14.037 -15.515 1.00 -1.00 \ ATOM 4 O PHE D 1 0.151 14.923 -15.925 1.00 -1.00 \ ATOM 5 CB PHE D 1 -0.227 11.497 -15.388 1.00 -1.00 \ ATOM 6 CG PHE D 1 -1.109 11.167 -14.246 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 -2.440 10.777 -14.467 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 -0.595 11.181 -12.901 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 -3.278 10.526 -13.390 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 -1.467 10.981 -11.842 1.00 -1.00 \ ATOM 11 CZ PHE D 1 -2.811 10.636 -12.099 1.00 -1.00 \ ATOM 12 N VAL D 2 -1.338 14.193 -14.422 1.00 -1.00 \ ATOM 13 CA VAL D 2 -1.445 15.466 -13.705 1.00 -1.00 \ ATOM 14 C VAL D 2 -1.034 15.358 -12.238 1.00 -1.00 \ ATOM 15 O VAL D 2 -1.598 16.026 -11.372 1.00 -1.00 \ ATOM 16 CB VAL D 2 -2.895 16.012 -13.835 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 -3.154 16.323 -15.292 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 -3.949 15.041 -13.287 1.00 -1.00 \ ATOM 19 N ASN D 3 -0.073 14.501 -11.938 1.00 -0.46 \ ATOM 20 CA ASN D 3 0.259 14.256 -10.518 1.00 -0.46 \ ATOM 21 C ASN D 3 0.764 15.476 -9.775 1.00 -0.46 \ ATOM 22 O ASN D 3 0.548 15.517 -8.535 1.00 -0.46 \ ATOM 23 CB ASN D 3 1.330 13.178 -10.424 1.00 -0.46 \ ATOM 24 CG ASN D 3 1.006 12.123 -9.526 1.00 -0.46 \ ATOM 25 OD1 ASN D 3 0.047 12.202 -8.721 1.00 -0.46 \ ATOM 26 ND2 ASN D 3 1.869 11.069 -9.549 1.00 -0.46 \ ATOM 27 N GLN D 4 1.480 16.373 -10.399 1.00 0.23 \ ATOM 28 CA GLN D 4 1.911 17.568 -9.645 1.00 0.23 \ ATOM 29 C GLN D 4 0.691 18.413 -9.284 1.00 0.23 \ ATOM 30 O GLN D 4 0.652 18.968 -8.136 1.00 0.23 \ ATOM 31 CB GLN D 4 2.953 18.412 -10.372 1.00 0.23 \ ATOM 32 CG GLN D 4 4.276 17.585 -10.538 1.00 0.23 \ ATOM 33 CD GLN D 4 5.365 18.330 -11.241 1.00 0.23 \ ATOM 34 OE1 GLN D 4 6.340 17.718 -11.745 1.00 0.23 \ ATOM 35 NE2 GLN D 4 5.246 19.658 -11.270 1.00 0.23 \ ATOM 36 N HIS D 5 -0.328 18.463 -10.139 1.00 -0.05 \ ATOM 37 CA HIS D 5 -1.614 19.141 -9.840 0.50 -0.05 \ ATOM 38 C HIS D 5 -2.286 18.444 -8.662 1.00 -0.05 \ ATOM 39 O HIS D 5 -2.787 19.118 -7.719 1.00 -0.05 \ ATOM 40 CB HIS D 5 -2.579 19.187 -11.056 0.50 -0.05 \ ATOM 41 CG HIS D 5 -3.934 19.778 -10.737 0.50 -0.05 \ ATOM 42 ND1 HIS D 5 -4.196 21.124 -10.871 0.50 -0.05 \ ATOM 43 CD2 HIS D 5 -5.063 19.222 -10.203 0.50 -0.05 \ ATOM 44 CE1 HIS D 5 -5.453 21.355 -10.529 0.50 -0.05 \ ATOM 45 NE2 HIS D 5 -6.000 20.231 -10.094 0.50 -0.05 \ ATOM 46 N LEU D 6 -2.381 17.140 -8.689 1.00 1.11 \ ATOM 47 CA LEU D 6 -3.007 16.383 -7.605 1.00 1.11 \ ATOM 48 C LEU D 6 -2.240 16.617 -6.290 1.00 1.11 \ ATOM 49 O LEU D 6 -2.868 16.862 -5.246 1.00 1.11 \ ATOM 50 CB LEU D 6 -3.108 14.899 -7.955 1.00 1.11 \ ATOM 51 CG LEU D 6 -3.898 14.534 -9.235 1.00 1.11 \ ATOM 52 CD1 LEU D 6 -3.852 13.053 -9.482 1.00 1.11 \ ATOM 53 CD2 LEU D 6 -5.260 15.132 -9.282 1.00 1.11 \ ATOM 54 N CYS D 7 -0.932 16.496 -6.340 1.00 1.72 \ ATOM 55 CA CYS D 7 -0.160 16.670 -5.077 1.00 1.72 \ ATOM 56 C CYS D 7 -0.415 18.089 -4.554 1.00 1.72 \ ATOM 57 O CYS D 7 -0.624 18.261 -3.330 1.00 1.72 \ ATOM 58 CB CYS D 7 1.296 16.412 -5.383 1.00 1.72 \ ATOM 59 SG CYS D 7 2.360 16.683 -3.911 1.00 1.72 \ ATOM 60 N GLY D 8 -0.384 19.124 -5.390 1.00 0.65 \ ATOM 61 CA GLY D 8 -0.659 20.522 -4.939 1.00 0.65 \ ATOM 62 C GLY D 8 -1.960 20.662 -4.197 1.00 0.65 \ ATOM 63 O GLY D 8 -2.057 21.366 -3.212 1.00 0.65 \ ATOM 64 N SER D 9 -2.974 19.956 -4.636 1.00 -0.48 \ ATOM 65 CA SER D 9 -4.270 20.005 -3.956 1.00 -0.48 \ ATOM 66 C SER D 9 -4.167 19.515 -2.511 1.00 -0.48 \ ATOM 67 O SER D 9 -4.708 20.111 -1.540 1.00 -0.48 \ ATOM 68 CB SER D 9 -5.292 19.117 -4.714 1.00 -0.48 \ ATOM 69 OG SER D 9 -6.510 19.007 -4.002 1.00 -0.48 \ ATOM 70 N HIS D 10 -3.406 18.427 -2.315 1.00 -0.22 \ ATOM 71 CA HIS D 10 -3.178 17.890 -0.957 1.00 -0.22 \ ATOM 72 C HIS D 10 -2.282 18.855 -0.137 1.00 -0.22 \ ATOM 73 O HIS D 10 -2.472 18.971 1.086 1.00 -0.22 \ ATOM 74 CB HIS D 10 -2.596 16.477 -1.029 1.00 -0.22 \ ATOM 75 CG HIS D 10 -3.575 15.497 -1.552 1.00 -0.22 \ ATOM 76 ND1 HIS D 10 -4.387 14.758 -0.728 1.00 -0.22 \ ATOM 77 CD2 HIS D 10 -3.880 15.147 -2.807 1.00 -0.22 \ ATOM 78 CE1 HIS D 10 -5.152 13.965 -1.471 1.00 -0.22 \ ATOM 79 NE2 HIS D 10 -4.818 14.158 -2.722 1.00 -0.22 \ ATOM 80 N LEU D 11 -1.291 19.434 -0.784 1.00 1.72 \ ATOM 81 CA LEU D 11 -0.434 20.425 -0.096 1.00 1.72 \ ATOM 82 C LEU D 11 -1.239 21.577 0.474 1.00 1.72 \ ATOM 83 O LEU D 11 -0.991 22.001 1.602 1.00 1.72 \ ATOM 84 CB LEU D 11 0.699 20.929 -0.984 1.00 1.72 \ ATOM 85 CG LEU D 11 1.824 19.892 -1.212 1.00 1.72 \ ATOM 86 CD1 LEU D 11 2.723 20.404 -2.317 1.00 1.72 \ ATOM 87 CD2 LEU D 11 2.575 19.558 0.037 1.00 1.72 \ ATOM 88 N VAL D 12 -2.147 22.125 -0.325 1.00 0.65 \ ATOM 89 CA VAL D 12 -3.012 23.275 0.111 0.50 0.65 \ ATOM 90 C VAL D 12 -3.794 22.887 1.356 1.00 0.65 \ ATOM 91 O VAL D 12 -3.939 23.656 2.327 1.00 0.65 \ ATOM 92 CB VAL D 12 -4.020 23.622 -1.000 0.50 0.65 \ ATOM 93 CG1 VAL D 12 -5.100 24.529 -0.492 0.50 0.65 \ ATOM 94 CG2 VAL D 12 -3.356 24.376 -2.104 0.50 0.65 \ ATOM 95 N GLU D 13 -4.391 21.694 1.320 1.00 0.69 \ ATOM 96 CA GLU D 13 -5.154 21.204 2.464 1.00 0.69 \ ATOM 97 C GLU D 13 -4.266 21.029 3.674 1.00 0.69 \ ATOM 98 O GLU D 13 -4.679 21.397 4.797 1.00 0.69 \ ATOM 99 CB GLU D 13 -5.870 19.913 2.148 1.00 0.69 \ ATOM 100 CG GLU D 13 -6.644 19.292 3.322 1.00 0.69 \ ATOM 101 CD GLU D 13 -7.660 20.201 4.100 1.00 0.69 \ ATOM 102 OE1 GLU D 13 -8.319 21.054 3.442 1.00 0.69 \ ATOM 103 OE2 GLU D 13 -7.721 20.088 5.379 1.00 0.69 \ ATOM 104 N ALA D 14 -3.064 20.521 3.467 1.00 -0.05 \ ATOM 105 CA ALA D 14 -2.099 20.363 4.606 1.00 -0.05 \ ATOM 106 C ALA D 14 -1.678 21.731 5.164 1.00 -0.05 \ ATOM 107 O ALA D 14 -1.613 21.886 6.418 1.00 -0.05 \ ATOM 108 CB ALA D 14 -0.861 19.590 4.145 1.00 -0.05 \ ATOM 109 N LEU D 15 -1.371 22.688 4.326 1.00 1.72 \ ATOM 110 CA LEU D 15 -0.988 24.043 4.796 1.00 1.72 \ ATOM 111 C LEU D 15 -2.196 24.669 5.539 1.00 1.72 \ ATOM 112 O LEU D 15 -2.005 25.334 6.568 1.00 1.72 \ ATOM 113 CB LEU D 15 -0.589 24.919 3.656 1.00 1.72 \ ATOM 114 CG LEU D 15 0.730 24.540 3.009 1.00 1.72 \ ATOM 115 CD1 LEU D 15 0.963 25.464 1.868 1.00 1.72 \ ATOM 116 CD2 LEU D 15 1.903 24.542 4.007 1.00 1.72 \ ATOM 117 N TYR D 16 -3.410 24.452 5.048 1.00 -0.23 \ ATOM 118 CA TYR D 16 -4.596 25.027 5.733 1.00 -0.23 \ ATOM 119 C TYR D 16 -4.592 24.555 7.183 1.00 -0.23 \ ATOM 120 O TYR D 16 -4.833 25.359 8.118 1.00 -0.23 \ ATOM 121 CB TYR D 16 -5.892 24.637 4.990 1.00 -0.23 \ ATOM 122 CG TYR D 16 -7.162 25.078 5.664 1.00 -0.23 \ ATOM 123 CD1 TYR D 16 -7.544 26.388 5.528 1.00 -0.23 \ ATOM 124 CD2 TYR D 16 -7.922 24.262 6.354 1.00 -0.23 \ ATOM 125 CE1 TYR D 16 -8.717 26.841 6.109 1.00 -0.23 \ ATOM 126 CE2 TYR D 16 -9.093 24.718 6.995 1.00 -0.23 \ ATOM 127 CZ TYR D 16 -9.454 26.012 6.871 1.00 -0.23 \ ATOM 128 OH TYR D 16 -10.603 26.496 7.495 1.00 -0.23 \ ATOM 129 N LEU D 17 -4.378 23.251 7.385 1.00 -0.22 \ ATOM 130 CA LEU D 17 -4.433 22.660 8.729 0.50 -0.22 \ ATOM 131 C LEU D 17 -3.196 23.122 9.540 1.00 -0.22 \ ATOM 132 O LEU D 17 -3.346 23.577 10.697 1.00 -0.22 \ ATOM 133 CB LEU D 17 -4.498 21.140 8.690 0.50 -0.22 \ ATOM 134 CG LEU D 17 -4.405 20.435 10.052 0.50 -0.22 \ ATOM 135 CD1 LEU D 17 -5.629 20.767 10.883 0.50 -0.22 \ ATOM 136 CD2 LEU D 17 -4.152 18.981 9.824 0.50 -0.22 \ ATOM 137 N VAL D 18 -1.996 23.005 8.991 1.00 0.22 \ ATOM 138 CA VAL D 18 -0.776 23.293 9.743 1.00 0.22 \ ATOM 139 C VAL D 18 -0.659 24.751 10.074 1.00 0.22 \ ATOM 140 O VAL D 18 -0.189 25.081 11.206 1.00 0.22 \ ATOM 141 CB VAL D 18 0.415 22.758 8.897 1.00 0.22 \ ATOM 142 CG1 VAL D 18 1.738 23.431 9.185 1.00 0.22 \ ATOM 143 CG2 VAL D 18 0.432 21.238 8.840 1.00 0.22 \ ATOM 144 N CYS D 19 -1.008 25.635 9.154 1.00 1.72 \ ATOM 145 CA CYS D 19 -0.680 27.079 9.313 1.00 1.72 \ ATOM 146 C CYS D 19 -1.670 27.723 10.296 1.00 1.72 \ ATOM 147 O CYS D 19 -1.333 28.745 10.888 1.00 1.72 \ ATOM 148 CB CYS D 19 -0.583 27.773 7.955 1.00 1.72 \ ATOM 149 SG CYS D 19 0.738 27.097 6.983 1.00 1.72 \ ATOM 150 N GLY D 20 -2.875 27.168 10.421 1.00 -0.22 \ ATOM 151 CA GLY D 20 -3.896 27.699 11.377 1.00 -0.22 \ ATOM 152 C GLY D 20 -4.176 29.168 11.099 1.00 -0.22 \ ATOM 153 O GLY D 20 -4.305 29.579 9.956 1.00 -0.22 \ ATOM 154 N GLU D 21 -4.181 29.996 12.160 1.00 0.20 \ ATOM 155 CA GLU D 21 -4.516 31.395 12.012 1.00 0.20 \ ATOM 156 C GLU D 21 -3.451 32.176 11.204 1.00 0.20 \ ATOM 157 O GLU D 21 -3.788 33.212 10.645 1.00 0.20 \ ATOM 158 CB GLU D 21 -4.796 32.048 13.420 1.00 0.20 \ ATOM 159 CG GLU D 21 -5.852 31.332 14.252 1.00 0.20 \ ATOM 160 N ARG D 22 -2.210 31.677 11.117 1.00 -0.65 \ ATOM 161 CA ARG D 22 -1.094 32.269 10.321 1.00 -0.65 \ ATOM 162 C ARG D 22 -1.556 32.377 8.851 1.00 -0.65 \ ATOM 163 O ARG D 22 -1.250 33.361 8.136 1.00 -0.65 \ ATOM 164 CB ARG D 22 0.214 31.435 10.394 1.00 -0.65 \ ATOM 165 CG ARG D 22 1.162 31.580 11.641 1.00 -0.65 \ ATOM 166 CD ARG D 22 2.280 30.536 11.703 1.00 -0.65 \ ATOM 167 NE ARG D 22 1.809 29.159 11.933 1.00 -0.65 \ ATOM 168 CZ ARG D 22 2.587 28.092 12.117 1.00 -0.65 \ ATOM 169 NH1 ARG D 22 3.921 28.227 12.046 1.00 -0.65 \ ATOM 170 NH2 ARG D 22 2.055 26.857 12.296 1.00 -0.65 \ ATOM 171 N GLY D 23 -2.292 31.374 8.366 1.00 1.72 \ ATOM 172 CA GLY D 23 -2.561 31.319 6.920 1.00 1.72 \ ATOM 173 C GLY D 23 -1.282 31.022 6.113 1.00 1.72 \ ATOM 174 O GLY D 23 -0.201 30.742 6.641 1.00 1.72 \ ATOM 175 N PHE D 24 -1.451 31.040 4.791 1.00 1.10 \ ATOM 176 CA PHE D 24 -0.375 30.780 3.842 1.00 1.10 \ ATOM 177 C PHE D 24 -0.564 31.476 2.501 1.00 1.10 \ ATOM 178 O PHE D 24 -1.631 31.831 2.061 1.00 1.10 \ ATOM 179 CB PHE D 24 -0.229 29.264 3.658 1.00 1.10 \ ATOM 180 CG PHE D 24 -1.449 28.593 3.068 1.00 1.10 \ ATOM 181 CD1 PHE D 24 -2.512 28.221 3.863 1.00 1.10 \ ATOM 182 CD2 PHE D 24 -1.526 28.328 1.680 1.00 1.10 \ ATOM 183 CE1 PHE D 24 -3.639 27.668 3.326 1.00 1.10 \ ATOM 184 CE2 PHE D 24 -2.634 27.704 1.160 1.00 1.10 \ ATOM 185 CZ PHE D 24 -3.693 27.396 1.963 1.00 1.10 \ ATOM 186 N PHE D 25 0.529 31.483 1.746 1.00 0.52 \ ATOM 187 CA PHE D 25 0.529 31.926 0.371 1.00 0.52 \ ATOM 188 C PHE D 25 0.847 30.710 -0.464 1.00 0.52 \ ATOM 189 O PHE D 25 1.758 29.970 -0.126 1.00 0.52 \ ATOM 190 CB PHE D 25 1.660 32.969 0.216 1.00 0.52 \ ATOM 191 CG PHE D 25 1.878 33.454 -1.172 1.00 0.52 \ ATOM 192 CD1 PHE D 25 1.146 34.522 -1.682 1.00 0.52 \ ATOM 193 CD2 PHE D 25 2.885 32.880 -1.977 1.00 0.52 \ ATOM 194 CE1 PHE D 25 1.368 34.986 -2.978 1.00 0.52 \ ATOM 195 CE2 PHE D 25 3.118 33.349 -3.276 1.00 0.52 \ ATOM 196 CZ PHE D 25 2.359 34.406 -3.774 1.00 0.52 \ ATOM 197 N TYR D 26 0.074 30.485 -1.520 1.00 -0.25 \ ATOM 198 CA TYR D 26 0.404 29.406 -2.456 1.00 -0.25 \ ATOM 199 C TYR D 26 0.569 29.991 -3.848 1.00 -0.25 \ ATOM 200 O TYR D 26 -0.343 30.617 -4.353 1.00 -0.25 \ ATOM 201 CB TYR D 26 -0.673 28.303 -2.419 1.00 -0.25 \ ATOM 202 CG TYR D 26 -0.343 27.200 -3.360 1.00 -0.25 \ ATOM 203 CD1 TYR D 26 0.628 26.241 -3.059 1.00 -0.25 \ ATOM 204 CD2 TYR D 26 -0.920 27.183 -4.618 1.00 -0.25 \ ATOM 205 CE1 TYR D 26 0.964 25.237 -4.002 1.00 -0.25 \ ATOM 206 CE2 TYR D 26 -0.561 26.237 -5.558 1.00 -0.25 \ ATOM 207 CZ TYR D 26 0.341 25.245 -5.253 1.00 -0.25 \ ATOM 208 OH TYR D 26 0.612 24.305 -6.259 1.00 -0.25 \ ATOM 216 N PRO D 28 2.253 28.188 -7.440 1.00 -1.00 \ ATOM 217 CA PRO D 28 3.097 27.131 -8.032 1.00 -1.00 \ ATOM 218 C PRO D 28 4.287 27.715 -8.808 1.00 -1.00 \ ATOM 219 O PRO D 28 4.129 28.753 -9.436 1.00 -1.00 \ ATOM 220 CB PRO D 28 2.139 26.410 -8.982 1.00 -1.00 \ ATOM 221 CG PRO D 28 1.162 27.458 -9.380 1.00 -1.00 \ ATOM 222 CD PRO D 28 0.961 28.301 -8.150 1.00 -1.00 \ ATOM 223 N GLY D 29 5.461 27.087 -8.691 1.00 -1.00 \ ATOM 224 CA GLY D 29 6.644 27.439 -9.483 1.00 -1.00 \ ATOM 225 C GLY D 29 7.805 28.089 -8.750 1.00 -1.00 \ ATOM 226 O GLY D 29 8.954 27.854 -9.123 1.00 -1.00 \ """, "e5bqqD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5bqqD1_csv", state=0, origin=1) cmd.zoom("e5bqqD1_csv", animate=-1)