cmd.read_pdbstr("""\ ATOM 1 N PHE H 1 -0.360 0.740 -9.428 1.00 -1.00 \ ATOM 2 CA PHE H 1 -0.785 2.106 -8.925 1.00 -1.00 \ ATOM 3 C PHE H 1 -2.268 2.305 -9.194 1.00 -1.00 \ ATOM 4 O PHE H 1 -2.891 1.589 -10.002 1.00 -1.00 \ ATOM 5 CB PHE H 1 0.008 3.240 -9.624 1.00 -1.00 \ ATOM 6 CG PHE H 1 1.487 3.227 -9.351 1.00 -1.00 \ ATOM 7 CD1 PHE H 1 2.004 3.704 -8.131 1.00 -1.00 \ ATOM 8 CD2 PHE H 1 2.367 2.796 -10.334 1.00 -1.00 \ ATOM 9 CE1 PHE H 1 3.361 3.706 -7.883 1.00 -1.00 \ ATOM 10 CE2 PHE H 1 3.736 2.797 -10.081 1.00 -1.00 \ ATOM 11 CZ PHE H 1 4.226 3.239 -8.862 1.00 -1.00 \ ATOM 12 N VAL H 2 -2.811 3.304 -8.512 1.00 -1.00 \ ATOM 13 CA VAL H 2 -4.248 3.635 -8.611 1.00 -1.00 \ ATOM 14 C VAL H 2 -4.375 5.088 -8.988 1.00 -1.00 \ ATOM 15 O VAL H 2 -5.400 5.733 -8.729 1.00 -1.00 \ ATOM 16 CB VAL H 2 -4.966 3.303 -7.292 1.00 -1.00 \ ATOM 17 CG1 VAL H 2 -4.951 1.788 -7.056 1.00 -1.00 \ ATOM 18 CG2 VAL H 2 -4.305 3.974 -6.120 1.00 -1.00 \ ATOM 19 N ASN H 3 -3.361 5.651 -9.617 1.00 -0.46 \ ATOM 20 CA ASN H 3 -3.373 7.072 -9.892 1.00 -0.46 \ ATOM 21 C ASN H 3 -4.582 7.591 -10.734 1.00 -0.46 \ ATOM 22 O ASN H 3 -5.072 8.709 -10.467 1.00 -0.46 \ ATOM 23 CB ASN H 3 -2.028 7.530 -10.497 1.00 -0.46 \ ATOM 24 CG ASN H 3 -1.573 6.687 -11.678 1.00 -0.46 \ ATOM 25 OD1 ASN H 3 -1.422 5.437 -11.578 1.00 -0.46 \ ATOM 26 ND2 ASN H 3 -1.288 7.353 -12.796 1.00 -0.46 \ ATOM 27 N GLN H 4 -5.075 6.855 -11.718 1.00 0.23 \ ATOM 28 CA GLN H 4 -6.194 7.324 -12.506 1.00 0.23 \ ATOM 29 C GLN H 4 -7.482 7.427 -11.632 1.00 0.23 \ ATOM 30 O GLN H 4 -8.307 8.353 -11.744 1.00 0.23 \ ATOM 31 CB GLN H 4 -6.415 6.475 -13.792 1.00 0.23 \ ATOM 32 CG GLN H 4 -5.175 6.329 -14.701 1.00 0.23 \ ATOM 33 CD GLN H 4 -4.819 7.530 -15.645 1.00 0.23 \ ATOM 34 OE1 GLN H 4 -3.873 7.429 -16.419 1.00 0.23 \ ATOM 35 NE2 GLN H 4 -5.531 8.614 -15.588 1.00 0.23 \ ATOM 36 N HIS H 5 -7.659 6.440 -10.760 1.00 -0.05 \ ATOM 37 CA HIS H 5 -8.766 6.439 -9.807 0.50 -0.05 \ ATOM 38 C HIS H 5 -8.661 7.657 -8.859 1.00 -0.05 \ ATOM 39 O HIS H 5 -9.674 8.307 -8.496 1.00 -0.05 \ ATOM 40 CB HIS H 5 -8.750 5.127 -9.032 0.50 -0.05 \ ATOM 41 CG HIS H 5 -9.131 3.917 -9.843 0.50 -0.05 \ ATOM 42 ND1 HIS H 5 -8.227 3.162 -10.578 0.50 -0.05 \ ATOM 43 CD2 HIS H 5 -10.315 3.276 -9.943 0.50 -0.05 \ ATOM 44 CE1 HIS H 5 -8.854 2.132 -11.103 0.50 -0.05 \ ATOM 45 NE2 HIS H 5 -10.112 2.172 -10.725 0.50 -0.05 \ ATOM 46 N LEU H 6 -7.445 7.991 -8.443 1.00 1.11 \ ATOM 47 CA LEU H 6 -7.227 9.178 -7.554 1.00 1.11 \ ATOM 48 C LEU H 6 -7.544 10.419 -8.297 1.00 1.11 \ ATOM 49 O LEU H 6 -8.243 11.330 -7.764 1.00 1.11 \ ATOM 50 CB LEU H 6 -5.809 9.226 -6.983 1.00 1.11 \ ATOM 51 CG LEU H 6 -5.314 7.954 -6.247 1.00 1.11 \ ATOM 52 CD1 LEU H 6 -3.865 8.116 -5.742 1.00 1.11 \ ATOM 53 CD2 LEU H 6 -6.177 7.506 -5.093 1.00 1.11 \ ATOM 54 N CYS H 7 -7.129 10.525 -9.532 1.00 1.72 \ ATOM 55 CA CYS H 7 -7.431 11.687 -10.355 1.00 1.72 \ ATOM 56 C CYS H 7 -8.958 11.903 -10.470 1.00 1.72 \ ATOM 57 O CYS H 7 -9.452 13.006 -10.308 1.00 1.72 \ ATOM 58 CB CYS H 7 -6.793 11.506 -11.700 1.00 1.72 \ ATOM 59 SG CYS H 7 -7.082 13.008 -12.770 1.00 1.72 \ ATOM 60 N GLY H 8 -9.672 10.820 -10.740 1.00 0.65 \ ATOM 61 CA GLY H 8 -11.095 10.862 -10.855 1.00 0.65 \ ATOM 62 C GLY H 8 -11.790 11.465 -9.649 1.00 0.65 \ ATOM 63 O GLY H 8 -12.786 12.225 -9.776 1.00 0.65 \ ATOM 64 N SER H 9 -11.281 11.207 -8.452 1.00 -0.48 \ ATOM 65 CA SER H 9 -11.831 11.784 -7.221 1.00 -0.48 \ ATOM 66 C SER H 9 -11.744 13.304 -7.254 1.00 -0.48 \ ATOM 67 O SER H 9 -12.704 14.026 -6.912 1.00 -0.48 \ ATOM 68 CB SER H 9 -11.064 11.266 -6.004 1.00 -0.48 \ ATOM 69 OG SER H 9 -11.479 12.037 -4.872 1.00 -0.48 \ ATOM 70 N HIS H 10 -10.607 13.846 -7.680 1.00 -0.22 \ ATOM 71 CA HIS H 10 -10.475 15.266 -7.833 1.00 -0.22 \ ATOM 72 C HIS H 10 -11.313 15.824 -8.959 1.00 -0.22 \ ATOM 73 O HIS H 10 -11.807 16.964 -8.846 1.00 -0.22 \ ATOM 74 CB HIS H 10 -8.972 15.599 -8.063 1.00 -0.22 \ ATOM 75 CG HIS H 10 -8.137 15.295 -6.873 1.00 -0.22 \ ATOM 76 ND1 HIS H 10 -7.795 16.264 -5.965 1.00 -0.22 \ ATOM 77 CD2 HIS H 10 -7.512 14.161 -6.466 1.00 -0.22 \ ATOM 78 CE1 HIS H 10 -7.046 15.728 -5.008 1.00 -0.22 \ ATOM 79 NE2 HIS H 10 -6.854 14.464 -5.294 1.00 -0.22 \ ATOM 80 N LEU H 11 -11.431 15.127 -10.078 1.00 1.72 \ ATOM 81 CA LEU H 11 -12.259 15.570 -11.149 1.00 1.72 \ ATOM 82 C LEU H 11 -13.699 15.736 -10.780 1.00 1.72 \ ATOM 83 O LEU H 11 -14.339 16.689 -11.154 1.00 1.72 \ ATOM 84 CB LEU H 11 -12.196 14.593 -12.326 1.00 1.72 \ ATOM 85 CG LEU H 11 -11.218 14.734 -13.385 1.00 1.72 \ ATOM 86 CD1 LEU H 11 -11.538 13.640 -14.435 1.00 1.72 \ ATOM 87 CD2 LEU H 11 -11.350 16.119 -14.049 1.00 1.72 \ ATOM 88 N VAL H 12 -14.268 14.780 -10.037 1.00 0.65 \ ATOM 89 CA VAL H 12 -15.649 14.869 -9.561 0.50 0.65 \ ATOM 90 C VAL H 12 -15.844 16.116 -8.709 1.00 0.65 \ ATOM 91 O VAL H 12 -16.826 16.789 -8.784 1.00 0.65 \ ATOM 92 CB VAL H 12 -16.016 13.578 -8.749 0.50 0.65 \ ATOM 93 CG1 VAL H 12 -17.304 13.699 -8.048 0.50 0.65 \ ATOM 94 CG2 VAL H 12 -16.163 12.354 -9.591 0.50 0.65 \ ATOM 95 N GLU H 13 -14.898 16.397 -7.802 1.00 0.69 \ ATOM 96 CA GLU H 13 -15.006 17.579 -6.988 1.00 0.69 \ ATOM 97 C GLU H 13 -14.927 18.835 -7.832 1.00 0.69 \ ATOM 98 O GLU H 13 -15.701 19.796 -7.569 1.00 0.69 \ ATOM 99 CB GLU H 13 -13.915 17.594 -5.935 1.00 0.69 \ ATOM 100 CG GLU H 13 -13.867 18.891 -5.092 1.00 0.69 \ ATOM 101 CD GLU H 13 -15.190 19.318 -4.371 1.00 0.69 \ ATOM 102 OE1 GLU H 13 -15.598 20.594 -4.384 1.00 0.69 \ ATOM 103 OE2 GLU H 13 -15.783 18.328 -3.813 1.00 0.69 \ ATOM 104 N ALA H 14 -14.046 18.849 -8.826 1.00 -0.05 \ ATOM 105 CA ALA H 14 -13.991 20.000 -9.723 1.00 -0.05 \ ATOM 106 C ALA H 14 -15.275 20.199 -10.490 1.00 -0.05 \ ATOM 107 O ALA H 14 -15.752 21.336 -10.639 1.00 -0.05 \ ATOM 108 CB ALA H 14 -12.799 19.871 -10.651 1.00 -0.05 \ ATOM 109 N LEU H 15 -15.842 19.126 -11.027 1.00 1.72 \ ATOM 110 CA LEU H 15 -17.127 19.241 -11.708 1.00 1.72 \ ATOM 111 C LEU H 15 -18.240 19.729 -10.803 1.00 1.72 \ ATOM 112 O LEU H 15 -19.086 20.570 -11.167 1.00 1.72 \ ATOM 113 CB LEU H 15 -17.540 17.918 -12.346 1.00 1.72 \ ATOM 114 CG LEU H 15 -16.776 17.443 -13.496 1.00 1.72 \ ATOM 115 CD1 LEU H 15 -17.206 16.081 -13.947 1.00 1.72 \ ATOM 116 CD2 LEU H 15 -16.996 18.428 -14.667 1.00 1.72 \ ATOM 117 N TYR H 16 -18.276 19.251 -9.577 1.00 -0.23 \ ATOM 118 CA TYR H 16 -19.233 19.690 -8.558 1.00 -0.23 \ ATOM 119 C TYR H 16 -19.185 21.211 -8.430 1.00 -0.23 \ ATOM 120 O TYR H 16 -20.228 21.894 -8.533 1.00 -0.23 \ ATOM 121 CB TYR H 16 -19.015 19.001 -7.238 1.00 -0.23 \ ATOM 122 CG TYR H 16 -19.896 19.513 -6.138 1.00 -0.23 \ ATOM 123 CD1 TYR H 16 -21.222 19.141 -6.132 1.00 -0.23 \ ATOM 124 CD2 TYR H 16 -19.418 20.338 -5.119 1.00 -0.23 \ ATOM 125 CE1 TYR H 16 -22.075 19.624 -5.141 1.00 -0.23 \ ATOM 126 CE2 TYR H 16 -20.271 20.779 -4.118 1.00 -0.23 \ ATOM 127 CZ TYR H 16 -21.583 20.423 -4.149 1.00 -0.23 \ ATOM 128 OH TYR H 16 -22.461 20.872 -3.167 1.00 -0.23 \ ATOM 129 N LEU H 17 -17.983 21.757 -8.292 1.00 -0.22 \ ATOM 130 CA LEU H 17 -17.830 23.202 -8.128 1.00 -0.22 \ ATOM 131 C LEU H 17 -18.211 23.962 -9.405 1.00 -0.22 \ ATOM 132 O LEU H 17 -18.946 24.984 -9.372 1.00 -0.22 \ ATOM 133 CB LEU H 17 -16.380 23.469 -7.817 1.00 -0.22 \ ATOM 134 CG LEU H 17 -16.029 24.960 -7.659 1.00 -0.22 \ ATOM 135 CD1 LEU H 17 -16.748 25.545 -6.469 1.00 -0.22 \ ATOM 136 CD2 LEU H 17 -14.516 25.118 -7.671 1.00 -0.22 \ ATOM 137 N VAL H 18 -17.704 23.518 -10.553 1.00 0.22 \ ATOM 138 CA VAL H 18 -17.926 24.238 -11.792 1.00 0.22 \ ATOM 139 C VAL H 18 -19.388 24.160 -12.207 1.00 0.22 \ ATOM 140 O VAL H 18 -19.959 25.168 -12.730 1.00 0.22 \ ATOM 141 CB VAL H 18 -17.015 23.681 -12.892 1.00 0.22 \ ATOM 142 CG1 VAL H 18 -17.420 24.132 -14.293 1.00 0.22 \ ATOM 143 CG2 VAL H 18 -15.573 23.991 -12.614 1.00 0.22 \ ATOM 144 N CYS H 19 -20.009 22.999 -12.123 1.00 1.72 \ ATOM 145 CA CYS H 19 -21.374 22.879 -12.657 1.00 1.72 \ ATOM 146 C CYS H 19 -22.417 23.493 -11.753 1.00 1.72 \ ATOM 147 O CYS H 19 -23.514 23.827 -12.250 1.00 1.72 \ ATOM 148 CB CYS H 19 -21.661 21.412 -12.996 1.00 1.72 \ ATOM 149 SG CYS H 19 -20.467 20.640 -14.122 1.00 1.72 \ ATOM 150 N GLY H 20 -22.177 23.554 -10.481 1.00 -0.22 \ ATOM 151 CA GLY H 20 -23.178 24.083 -9.536 1.00 -0.22 \ ATOM 152 C GLY H 20 -24.547 23.409 -9.665 1.00 -0.22 \ ATOM 153 O GLY H 20 -24.704 22.186 -9.785 1.00 -0.22 \ ATOM 154 N GLU H 21 -25.567 24.255 -9.780 1.00 0.20 \ ATOM 155 CA GLU H 21 -26.936 23.742 -9.785 1.00 0.20 \ ATOM 156 C GLU H 21 -27.297 22.988 -11.038 1.00 0.20 \ ATOM 157 O GLU H 21 -28.308 22.269 -11.036 1.00 0.20 \ ATOM 158 CB GLU H 21 -27.950 24.913 -9.617 1.00 0.20 \ ATOM 159 CG GLU H 21 -27.915 25.542 -8.242 1.00 0.20 \ ATOM 160 CD GLU H 21 -28.461 24.623 -7.147 1.00 0.20 \ ATOM 161 OE1 GLU H 21 -29.550 24.018 -7.345 1.00 0.20 \ ATOM 162 OE2 GLU H 21 -27.790 24.512 -6.088 1.00 0.20 \ ATOM 163 N ARG H 22 -26.538 23.144 -12.113 1.00 -0.65 \ ATOM 164 CA ARG H 22 -26.776 22.404 -13.335 0.50 -0.65 \ ATOM 165 C ARG H 22 -26.588 20.905 -13.149 1.00 -0.65 \ ATOM 166 O ARG H 22 -27.272 20.086 -13.848 1.00 -0.65 \ ATOM 167 CB ARG H 22 -25.864 22.867 -14.447 0.50 -0.65 \ ATOM 168 CG ARG H 22 -26.143 24.287 -14.933 0.50 -0.65 \ ATOM 169 CD ARG H 22 -25.001 24.769 -15.820 0.50 -0.65 \ ATOM 170 NE ARG H 22 -24.963 24.088 -17.104 0.50 -0.65 \ ATOM 171 CZ ARG H 22 -23.961 24.164 -17.953 0.50 -0.65 \ ATOM 172 NH1 ARG H 22 -22.887 24.874 -17.640 0.50 -0.65 \ ATOM 173 NH2 ARG H 22 -24.027 23.523 -19.083 0.50 -0.65 \ ATOM 174 N GLY H 23 -25.698 20.519 -12.255 1.00 1.72 \ ATOM 175 CA GLY H 23 -25.388 19.091 -12.116 1.00 1.72 \ ATOM 176 C GLY H 23 -24.575 18.570 -13.304 1.00 1.72 \ ATOM 177 O GLY H 23 -24.194 19.279 -14.255 1.00 1.72 \ ATOM 178 N PHE H 24 -24.340 17.240 -13.221 1.00 1.10 \ ATOM 179 CA PHE H 24 -23.541 16.551 -14.215 1.00 1.10 \ ATOM 180 C PHE H 24 -23.808 15.022 -14.079 1.00 1.10 \ ATOM 181 O PHE H 24 -24.226 14.585 -13.040 1.00 1.10 \ ATOM 182 CB PHE H 24 -22.023 16.848 -13.981 1.00 1.10 \ ATOM 183 CG PHE H 24 -21.502 16.428 -12.641 1.00 1.10 \ ATOM 184 CD1 PHE H 24 -21.557 17.285 -11.531 1.00 1.10 \ ATOM 185 CD2 PHE H 24 -20.897 15.195 -12.441 1.00 1.10 \ ATOM 186 CE1 PHE H 24 -21.092 16.959 -10.312 1.00 1.10 \ ATOM 187 CE2 PHE H 24 -20.394 14.842 -11.180 1.00 1.10 \ ATOM 188 CZ PHE H 24 -20.472 15.730 -10.105 1.00 1.10 \ ATOM 189 N PHE H 25 -23.349 14.328 -15.103 1.00 0.52 \ ATOM 190 CA PHE H 25 -23.225 12.851 -15.111 1.00 0.52 \ ATOM 191 C PHE H 25 -21.737 12.572 -15.077 1.00 0.52 \ ATOM 192 O PHE H 25 -20.969 13.215 -15.835 1.00 0.52 \ ATOM 193 CB PHE H 25 -23.842 12.317 -16.363 1.00 0.52 \ ATOM 194 CG PHE H 25 -23.653 10.844 -16.579 0.75 0.52 \ ATOM 195 CD1 PHE H 25 -24.480 9.930 -15.963 0.75 0.52 \ ATOM 196 CD2 PHE H 25 -22.626 10.359 -17.376 0.75 0.52 \ ATOM 197 CE1 PHE H 25 -24.267 8.573 -16.125 0.75 0.52 \ ATOM 198 CE2 PHE H 25 -22.451 8.980 -17.591 0.75 0.52 \ ATOM 199 CZ PHE H 25 -23.295 8.069 -16.962 0.75 0.52 \ ATOM 200 N TYR H 26 -21.347 11.562 -14.321 1.00 -0.25 \ ATOM 201 CA TYR H 26 -19.968 11.122 -14.326 1.00 -0.25 \ ATOM 202 C TYR H 26 -19.848 9.614 -14.345 1.00 -0.25 \ ATOM 203 O TYR H 26 -20.438 8.944 -13.510 1.00 -0.25 \ ATOM 204 CB TYR H 26 -19.195 11.686 -13.107 1.00 -0.25 \ ATOM 205 CG TYR H 26 -17.739 11.280 -13.094 1.00 -0.25 \ ATOM 206 CD1 TYR H 26 -17.297 10.080 -12.548 1.00 -0.25 \ ATOM 207 CD2 TYR H 26 -16.816 12.122 -13.737 1.00 -0.25 \ ATOM 208 CE1 TYR H 26 -15.945 9.728 -12.572 1.00 -0.25 \ ATOM 209 CE2 TYR H 26 -15.478 11.821 -13.732 1.00 -0.25 \ ATOM 210 CZ TYR H 26 -15.043 10.625 -13.210 1.00 -0.25 \ ATOM 211 OH TYR H 26 -13.675 10.311 -13.310 1.00 -0.25 \ ATOM 219 N PRO H 28 -16.439 6.774 -14.971 1.00 -1.00 \ ATOM 220 CA PRO H 28 -15.056 6.525 -15.426 1.00 -1.00 \ ATOM 221 C PRO H 28 -14.966 5.873 -16.794 1.00 -1.00 \ ATOM 222 O PRO H 28 -15.722 4.942 -17.131 1.00 -1.00 \ ATOM 223 CB PRO H 28 -14.547 5.510 -14.387 1.00 -1.00 \ ATOM 224 CG PRO H 28 -15.361 5.632 -13.201 1.00 -1.00 \ ATOM 225 CD PRO H 28 -16.721 6.141 -13.691 1.00 -1.00 \ ATOM 226 N GLY H 29 -14.155 6.412 -17.646 1.00 -1.00 \ ATOM 227 CA GLY H 29 -13.959 5.747 -18.931 1.00 -1.00 \ ATOM 228 C GLY H 29 -14.986 5.997 -20.035 1.00 -1.00 \ ATOM 229 O GLY H 29 -14.841 5.425 -21.100 1.00 -1.00 \ """, "e5bqqH1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5bqqH1_csv", state=0, origin=1) cmd.zoom("e5bqqH1_csv", animate=-1)