cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 11.933 -18.089 7.274 1.00 -1.00 \ ATOM 2 CA PHE D 1 11.156 -16.854 6.969 1.00 -1.00 \ ATOM 3 C PHE D 1 10.944 -16.748 5.466 1.00 -1.00 \ ATOM 4 O PHE D 1 11.673 -17.327 4.666 1.00 -1.00 \ ATOM 5 CB PHE D 1 11.935 -15.641 7.439 1.00 -1.00 \ ATOM 6 CG PHE D 1 12.303 -15.665 8.907 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 11.348 -15.885 9.864 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 13.586 -15.431 9.310 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 11.677 -15.865 11.222 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 13.942 -15.426 10.652 1.00 -1.00 \ ATOM 11 CZ PHE D 1 12.994 -15.667 11.615 1.00 -1.00 \ ATOM 12 N VAL D 2 9.950 -15.993 5.077 1.00 -1.00 \ ATOM 13 CA VAL D 2 9.601 -15.825 3.665 1.00 -1.00 \ ATOM 14 C VAL D 2 10.215 -14.511 3.154 1.00 -1.00 \ ATOM 15 O VAL D 2 10.472 -13.570 3.951 1.00 -1.00 \ ATOM 16 CB VAL D 2 8.062 -15.825 3.474 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 7.441 -17.194 3.843 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 7.366 -14.713 4.275 1.00 -1.00 \ ATOM 19 N ASN D 3 10.347 -14.405 1.841 1.00 -0.48 \ ATOM 20 CA ASN D 3 10.702 -13.136 1.219 1.00 -0.48 \ ATOM 21 C ASN D 3 9.587 -12.140 1.231 1.00 -0.48 \ ATOM 22 O ASN D 3 8.416 -12.534 1.352 1.00 -0.48 \ ATOM 23 CB ASN D 3 11.101 -13.377 -0.208 1.00 -0.48 \ ATOM 24 CG ASN D 3 12.423 -14.100 -0.299 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 13.370 -13.853 0.492 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 12.491 -15.035 -1.209 1.00 -0.48 \ ATOM 27 N GLN D 4 9.946 -10.865 1.102 1.00 0.23 \ ATOM 28 CA GLN D 4 9.070 -9.767 1.415 1.00 0.23 \ ATOM 29 C GLN D 4 8.982 -8.816 0.285 1.00 0.23 \ ATOM 30 O GLN D 4 9.970 -8.542 -0.391 1.00 0.23 \ ATOM 31 CB GLN D 4 9.701 -8.961 2.539 1.00 0.23 \ ATOM 32 CG GLN D 4 10.179 -9.850 3.674 1.00 0.23 \ ATOM 33 CD GLN D 4 8.978 -10.250 4.551 1.00 0.23 \ ATOM 34 OE1 GLN D 4 8.216 -9.362 4.969 1.00 0.23 \ ATOM 35 NE2 GLN D 4 8.845 -11.518 4.872 1.00 0.23 \ ATOM 36 N HIS D 5 7.813 -8.242 0.106 1.00 -0.03 \ ATOM 37 CA HIS D 5 7.651 -7.140 -0.840 1.00 -0.03 \ ATOM 38 C HIS D 5 7.138 -5.945 -0.055 1.00 -0.03 \ ATOM 39 O HIS D 5 6.008 -6.027 0.434 1.00 -0.03 \ ATOM 40 CB HIS D 5 6.598 -7.536 -1.874 1.00 -0.03 \ ATOM 41 CG HIS D 5 6.404 -6.513 -2.920 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 5.292 -6.488 -3.741 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 7.184 -5.482 -3.302 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 5.400 -5.478 -4.581 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 6.534 -4.844 -4.332 1.00 -0.03 \ ATOM 46 N LEU D 6 7.990 -4.964 0.194 1.00 1.17 \ ATOM 47 CA LEU D 6 7.725 -3.921 1.213 1.00 1.17 \ ATOM 48 C LEU D 6 8.052 -2.540 0.616 1.00 1.17 \ ATOM 49 O LEU D 6 9.189 -2.254 0.244 1.00 1.17 \ ATOM 50 CB LEU D 6 8.561 -4.202 2.464 1.00 1.17 \ ATOM 51 CG LEU D 6 8.433 -5.528 3.159 1.00 1.17 \ ATOM 52 CD1 LEU D 6 9.638 -5.736 4.055 1.00 1.17 \ ATOM 53 CD2 LEU D 6 7.154 -5.646 3.954 1.00 1.17 \ ATOM 54 N CYS D 7 7.028 -1.689 0.594 1.00 1.69 \ ATOM 55 CA CYS D 7 7.082 -0.336 0.160 1.00 1.69 \ ATOM 56 C CYS D 7 6.648 0.567 1.260 1.00 1.69 \ ATOM 57 O CYS D 7 5.900 0.197 2.169 1.00 1.69 \ ATOM 58 CB CYS D 7 6.167 -0.126 -1.030 1.00 1.69 \ ATOM 59 SG CYS D 7 6.575 -1.166 -2.455 1.00 1.69 \ ATOM 60 N GLY D 8 7.250 1.751 1.233 1.00 0.76 \ ATOM 61 CA GLY D 8 6.885 2.838 2.132 1.00 0.76 \ ATOM 62 C GLY D 8 7.029 2.486 3.552 1.00 0.76 \ ATOM 63 O GLY D 8 8.002 1.833 3.961 1.00 0.76 \ ATOM 64 N SER D 9 5.979 2.801 4.320 1.00 -0.47 \ ATOM 65 CA SER D 9 5.953 2.582 5.755 1.00 -0.47 \ ATOM 66 C SER D 9 6.101 1.088 6.163 1.00 -0.47 \ ATOM 67 O SER D 9 6.572 0.778 7.257 1.00 -0.47 \ ATOM 68 CB SER D 9 4.712 3.218 6.387 1.00 -0.47 \ ATOM 69 OG SER D 9 3.523 2.646 5.958 1.00 -0.47 \ ATOM 70 N HIS D 10 5.752 0.199 5.247 1.00 -0.23 \ ATOM 71 CA HIS D 10 5.757 -1.211 5.546 1.00 -0.23 \ ATOM 72 C HIS D 10 7.200 -1.718 5.675 1.00 -0.23 \ ATOM 73 O HIS D 10 7.461 -2.668 6.403 1.00 -0.23 \ ATOM 74 CB HIS D 10 5.083 -1.942 4.483 1.00 -0.23 \ ATOM 75 CG HIS D 10 3.662 -1.618 4.395 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 2.793 -1.990 5.391 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 2.953 -0.938 3.476 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 1.576 -1.607 5.044 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 1.657 -0.978 3.888 1.00 -0.23 \ ATOM 80 N LEU D 11 8.141 -1.071 4.991 1.00 1.69 \ ATOM 81 CA LEU D 11 9.558 -1.428 5.145 1.00 1.69 \ ATOM 82 C LEU D 11 10.031 -1.066 6.534 1.00 1.69 \ ATOM 83 O LEU D 11 10.774 -1.798 7.153 1.00 1.69 \ ATOM 84 CB LEU D 11 10.375 -0.694 4.110 1.00 1.69 \ ATOM 85 CG LEU D 11 11.854 -1.104 4.286 1.00 1.69 \ ATOM 86 CD1 LEU D 11 12.106 -2.624 4.411 1.00 1.69 \ ATOM 87 CD2 LEU D 11 12.617 -0.522 3.145 1.00 1.69 \ ATOM 88 N VAL D 12 9.648 0.123 6.983 1.00 0.76 \ ATOM 89 CA VAL D 12 10.014 0.582 8.330 1.00 0.76 \ ATOM 90 C VAL D 12 9.432 -0.317 9.430 1.00 0.76 \ ATOM 91 O VAL D 12 10.099 -0.622 10.407 1.00 0.76 \ ATOM 92 CB VAL D 12 9.585 2.082 8.502 1.00 0.76 \ ATOM 93 CG1 VAL D 12 9.656 2.520 9.929 1.00 0.76 \ ATOM 94 CG2 VAL D 12 10.452 2.974 7.664 1.00 0.76 \ ATOM 95 N GLU D 13 8.244 -0.809 9.214 1.00 0.64 \ ATOM 96 CA GLU D 13 7.629 -1.718 10.168 1.00 0.64 \ ATOM 97 C GLU D 13 8.444 -3.023 10.225 1.00 0.64 \ ATOM 98 O GLU D 13 8.633 -3.582 11.264 1.00 0.64 \ ATOM 99 CB GLU D 13 6.260 -1.968 9.642 1.00 0.64 \ ATOM 100 CG GLU D 13 5.103 -2.218 10.548 1.00 0.64 \ ATOM 101 CD GLU D 13 5.027 -1.311 11.750 1.00 0.64 \ ATOM 102 OE1 GLU D 13 4.416 -0.153 11.731 1.00 0.64 \ ATOM 103 OE2 GLU D 13 5.546 -1.848 12.725 1.00 0.64 \ ATOM 104 N ALA D 14 8.897 -3.500 9.082 1.00 0.02 \ ATOM 105 CA ALA D 14 9.699 -4.702 9.049 1.00 0.02 \ ATOM 106 C ALA D 14 11.024 -4.489 9.713 1.00 0.02 \ ATOM 107 O ALA D 14 11.529 -5.314 10.452 1.00 0.02 \ ATOM 108 CB ALA D 14 9.881 -5.146 7.631 1.00 0.02 \ ATOM 109 N LEU D 15 11.650 -3.363 9.460 1.00 1.69 \ ATOM 110 CA LEU D 15 12.919 -3.077 10.122 1.00 1.69 \ ATOM 111 C LEU D 15 12.785 -3.069 11.664 1.00 1.69 \ ATOM 112 O LEU D 15 13.663 -3.574 12.366 1.00 1.69 \ ATOM 113 CB LEU D 15 13.508 -1.736 9.654 1.00 1.69 \ ATOM 114 CG LEU D 15 14.187 -1.817 8.257 1.00 1.69 \ ATOM 115 CD1 LEU D 15 14.399 -0.380 7.849 1.00 1.69 \ ATOM 116 CD2 LEU D 15 15.475 -2.625 8.352 1.00 1.69 \ ATOM 117 N TYR D 16 11.722 -2.430 12.135 1.00 -0.21 \ ATOM 118 CA TYR D 16 11.398 -2.366 13.542 1.00 -0.21 \ ATOM 119 C TYR D 16 11.305 -3.774 14.137 1.00 -0.21 \ ATOM 120 O TYR D 16 11.900 -4.034 15.180 1.00 -0.21 \ ATOM 121 CB TYR D 16 10.103 -1.575 13.729 1.00 -0.21 \ ATOM 122 CG TYR D 16 9.784 -1.533 15.218 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 10.536 -0.777 16.073 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 8.777 -2.326 15.732 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 10.316 -0.788 17.464 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 8.547 -2.352 17.101 1.00 -0.21 \ ATOM 127 CZ TYR D 16 9.317 -1.567 17.933 1.00 -0.21 \ ATOM 128 OH TYR D 16 9.028 -1.608 19.273 1.00 -0.21 \ ATOM 129 N LEU D 17 10.587 -4.658 13.466 1.00 -0.24 \ ATOM 130 CA LEU D 17 10.376 -6.044 13.986 1.00 -0.24 \ ATOM 131 C LEU D 17 11.658 -6.837 13.942 1.00 -0.24 \ ATOM 132 O LEU D 17 11.991 -7.599 14.885 1.00 -0.24 \ ATOM 133 CB LEU D 17 9.316 -6.722 13.158 1.00 -0.24 \ ATOM 134 CG LEU D 17 7.937 -6.082 13.371 1.00 -0.24 \ ATOM 135 CD1 LEU D 17 6.895 -6.592 12.394 1.00 -0.24 \ ATOM 136 CD2 LEU D 17 7.542 -6.326 14.822 1.00 -0.24 \ ATOM 137 N VAL D 18 12.421 -6.654 12.865 1.00 0.30 \ ATOM 138 CA VAL D 18 13.638 -7.366 12.726 1.00 0.30 \ ATOM 139 C VAL D 18 14.724 -6.972 13.737 1.00 0.30 \ ATOM 140 O VAL D 18 15.406 -7.831 14.288 1.00 0.30 \ ATOM 141 CB VAL D 18 14.163 -7.276 11.268 1.00 0.30 \ ATOM 142 CG1 VAL D 18 15.571 -7.786 11.208 1.00 0.30 \ ATOM 143 CG2 VAL D 18 13.256 -8.071 10.358 1.00 0.30 \ ATOM 144 N CYS D 19 14.832 -5.657 14.005 1.00 1.69 \ ATOM 145 CA CYS D 19 15.933 -5.099 14.775 1.00 1.69 \ ATOM 146 C CYS D 19 15.579 -4.905 16.245 1.00 1.69 \ ATOM 147 O CYS D 19 16.468 -4.996 17.117 1.00 1.69 \ ATOM 148 CB CYS D 19 16.413 -3.784 14.131 1.00 1.69 \ ATOM 149 SG CYS D 19 16.977 -3.936 12.421 1.00 1.69 \ ATOM 150 N GLY D 20 14.318 -4.612 16.510 1.00 -0.12 \ ATOM 151 CA GLY D 20 13.859 -4.360 17.862 1.00 -0.12 \ ATOM 152 C GLY D 20 14.715 -3.323 18.530 1.00 -0.12 \ ATOM 153 O GLY D 20 14.939 -2.242 17.956 1.00 -0.12 \ ATOM 154 N GLU D 21 15.259 -3.704 19.691 0.50 0.18 \ ATOM 155 CA GLU D 21 15.940 -2.777 20.589 0.50 0.18 \ ATOM 156 C GLU D 21 17.274 -2.352 20.071 0.50 0.18 \ ATOM 157 O GLU D 21 17.814 -1.354 20.535 0.50 0.18 \ ATOM 158 CB GLU D 21 16.129 -3.410 21.973 0.50 0.18 \ ATOM 159 CG GLU D 21 17.170 -4.517 22.028 0.50 0.18 \ ATOM 160 CD GLU D 21 17.265 -5.103 23.417 0.50 0.18 \ ATOM 161 OE1 GLU D 21 17.648 -6.286 23.550 0.50 0.18 \ ATOM 162 OE2 GLU D 21 16.946 -4.358 24.366 0.50 0.18 \ ATOM 163 N ARG D 22 17.804 -3.111 19.115 1.00 -0.58 \ ATOM 164 CA ARG D 22 19.037 -2.790 18.511 1.00 -0.58 \ ATOM 165 C ARG D 22 18.859 -1.490 17.740 1.00 -0.58 \ ATOM 166 O ARG D 22 19.863 -0.820 17.536 1.00 -0.58 \ ATOM 167 CB ARG D 22 19.508 -3.850 17.534 1.00 -0.58 \ ATOM 168 CG ARG D 22 19.933 -5.158 18.148 1.00 -0.58 \ ATOM 169 CD ARG D 22 20.515 -6.046 17.053 1.00 -0.58 \ ATOM 170 NE ARG D 22 19.451 -6.731 16.311 1.00 -0.58 \ ATOM 171 CZ ARG D 22 19.663 -7.634 15.356 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 18.630 -8.208 14.757 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 20.924 -7.949 14.989 1.00 -0.58 \ ATOM 174 N GLY D 23 17.630 -1.162 17.279 1.00 1.69 \ ATOM 175 CA GLY D 23 17.411 -0.011 16.352 1.00 1.69 \ ATOM 176 C GLY D 23 17.962 -0.296 14.975 1.00 1.69 \ ATOM 177 O GLY D 23 18.509 -1.375 14.705 1.00 1.69 \ ATOM 178 N PHE D 24 17.798 0.677 14.090 1.00 1.16 \ ATOM 179 CA PHE D 24 18.098 0.535 12.687 1.00 1.16 \ ATOM 180 C PHE D 24 18.211 1.872 12.028 1.00 1.16 \ ATOM 181 O PHE D 24 17.750 2.907 12.562 1.00 1.16 \ ATOM 182 CB PHE D 24 17.002 -0.259 11.988 1.00 1.16 \ ATOM 183 CG PHE D 24 15.635 0.368 12.029 1.00 1.16 \ ATOM 184 CD1 PHE D 24 14.768 0.107 13.088 1.00 1.16 \ ATOM 185 CD2 PHE D 24 15.202 1.158 10.978 1.00 1.16 \ ATOM 186 CE1 PHE D 24 13.506 0.701 13.083 1.00 1.16 \ ATOM 187 CE2 PHE D 24 13.951 1.749 10.950 1.00 1.16 \ ATOM 188 CZ PHE D 24 13.064 1.433 11.989 1.00 1.16 \ ATOM 189 N PHE D 25 18.826 1.877 10.839 0.50 0.51 \ ATOM 190 CA PHE D 25 18.859 3.048 10.001 0.50 0.51 \ ATOM 191 C PHE D 25 18.006 2.802 8.774 0.50 0.51 \ ATOM 192 O PHE D 25 18.077 1.731 8.183 0.50 0.51 \ ATOM 193 CB PHE D 25 20.271 3.534 9.617 0.50 0.51 \ ATOM 194 CG PHE D 25 21.278 2.442 9.322 0.50 0.51 \ ATOM 195 CD1 PHE D 25 21.808 1.672 10.347 0.50 0.51 \ ATOM 196 CD2 PHE D 25 21.745 2.229 8.002 0.50 0.51 \ ATOM 197 CE1 PHE D 25 22.742 0.675 10.056 0.50 0.51 \ ATOM 198 CE2 PHE D 25 22.683 1.252 7.730 0.50 0.51 \ ATOM 199 CZ PHE D 25 23.181 0.484 8.748 0.50 0.51 \ ATOM 200 N TYR D 26 17.161 3.778 8.486 1.00 -0.23 \ ATOM 201 CA TYR D 26 16.328 3.824 7.296 1.00 -0.23 \ ATOM 202 C TYR D 26 16.994 4.770 6.300 1.00 -0.23 \ ATOM 203 O TYR D 26 16.989 6.008 6.500 1.00 -0.23 \ ATOM 204 CB TYR D 26 14.906 4.242 7.678 1.00 -0.23 \ ATOM 205 CG TYR D 26 14.025 4.324 6.471 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 13.539 5.541 6.068 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 13.683 3.170 5.728 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 12.721 5.668 4.922 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 12.851 3.278 4.613 1.00 -0.23 \ ATOM 210 CZ TYR D 26 12.394 4.551 4.217 1.00 -0.23 \ ATOM 211 OH TYR D 26 11.578 4.719 3.083 1.00 -0.23 \ ATOM 212 N THR D 27 17.491 4.229 5.165 1.00 -0.98 \ ATOM 213 CA THR D 27 18.301 5.006 4.232 1.00 -0.98 \ ATOM 214 C THR D 27 17.870 4.800 2.768 1.00 -0.98 \ ATOM 215 O THR D 27 18.461 3.991 2.040 1.00 -0.98 \ ATOM 216 CB THR D 27 19.830 4.735 4.437 1.00 -0.98 \ ATOM 217 OG1 THR D 27 20.147 4.778 5.856 1.00 -0.98 \ ATOM 218 CG2 THR D 27 20.683 5.753 3.680 1.00 -0.98 \ ATOM 219 N PRO D 28 16.796 5.469 2.393 1.00 -0.78 \ ATOM 220 CA PRO D 28 16.364 5.472 0.993 1.00 -0.78 \ ATOM 221 C PRO D 28 17.306 6.225 0.120 1.00 -0.78 \ ATOM 222 O PRO D 28 18.046 7.084 0.608 1.00 -0.78 \ ATOM 223 CB PRO D 28 15.064 6.227 1.019 1.00 -0.78 \ ATOM 224 CG PRO D 28 14.936 6.817 2.346 1.00 -0.78 \ ATOM 225 CD PRO D 28 16.008 6.364 3.221 1.00 -0.78 \ ATOM 226 N LYS D 29 17.275 5.894 -1.170 1.00 -0.90 \ ATOM 227 CA LYS D 29 17.996 6.609 -2.182 1.00 -0.90 \ ATOM 228 C LYS D 29 17.404 7.995 -2.376 1.00 -0.90 \ ATOM 229 O LYS D 29 16.151 8.203 -2.279 1.00 -0.90 \ ATOM 230 CB LYS D 29 17.905 5.850 -3.517 1.00 -0.90 \ ATOM 231 CG LYS D 29 19.109 6.005 -4.416 1.00 -0.90 \ ATOM 232 CD LYS D 29 19.224 4.808 -5.353 1.00 -0.90 \ ATOM 233 CE LYS D 29 18.258 4.907 -6.505 1.00 -0.90 \ ATOM 234 NZ LYS D 29 18.351 3.678 -7.344 1.00 -0.90 \ ATOM 235 N THR D 30 18.319 8.910 -2.722 1.00 -1.45 \ ATOM 236 CA THR D 30 18.044 10.332 -3.002 1.00 -1.45 \ ATOM 237 C THR D 30 16.792 10.870 -2.303 1.00 -1.45 \ ATOM 238 O THR D 30 16.731 10.858 -1.061 1.00 -1.45 \ ATOM 239 CB THR D 30 18.052 10.664 -4.523 1.00 -1.45 \ ATOM 240 OG1 THR D 30 16.896 11.445 -4.862 1.00 -1.45 \ ATOM 241 CG2 THR D 30 18.103 9.398 -5.391 1.00 -1.45 \ """, "e5co2D1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5co2D1_csv", state=0, origin=1) cmd.zoom("e5co2D1_csv", animate=-1)