cmd.read_pdbstr("""\ ATOM 1 N VAL y 18 106.364 38.616 61.662 1.00 -1.50 \ ATOM 2 CA VAL y 18 107.248 39.779 61.658 1.00 -1.50 \ ATOM 3 C VAL y 18 107.973 39.946 60.312 1.00 -1.50 \ ATOM 4 O VAL y 18 108.137 41.067 59.823 1.00 -1.50 \ ATOM 5 CB VAL y 18 108.292 39.700 62.804 1.00 -1.50 \ ATOM 6 CG1 VAL y 18 109.040 41.017 62.948 1.00 -1.50 \ ATOM 7 CG2 VAL y 18 107.620 39.320 64.117 1.00 -1.50 \ ATOM 8 N ILE y 19 108.430 38.835 59.736 1.00 0.64 \ ATOM 9 CA ILE y 19 109.081 38.845 58.426 1.00 0.64 \ ATOM 10 C ILE y 19 108.143 39.307 57.302 1.00 0.64 \ ATOM 11 O ILE y 19 108.534 40.080 56.406 1.00 0.64 \ ATOM 12 CB ILE y 19 109.619 37.435 58.080 1.00 0.64 \ ATOM 13 CG1 ILE y 19 110.559 36.929 59.175 1.00 0.64 \ ATOM 14 CG2 ILE y 19 110.311 37.433 56.733 1.00 0.64 \ ATOM 15 CD1 ILE y 19 110.603 35.428 59.289 1.00 0.64 \ ATOM 16 N ALA y 20 106.889 38.867 57.393 1.00 0.64 \ ATOM 17 CA ALA y 20 105.849 39.216 56.422 1.00 0.64 \ ATOM 18 C ALA y 20 105.477 40.692 56.407 1.00 0.64 \ ATOM 19 O ALA y 20 105.250 41.264 55.336 1.00 0.64 \ ATOM 20 CB ALA y 20 104.605 38.383 56.678 1.00 0.64 \ ATOM 21 N GLN y 21 105.450 41.307 57.589 1.00 0.64 \ ATOM 22 CA GLN y 21 105.088 42.720 57.732 1.00 0.64 \ ATOM 23 C GLN y 21 106.194 43.613 57.172 1.00 0.64 \ ATOM 24 O GLN y 21 105.919 44.647 56.542 1.00 0.64 \ ATOM 25 CB GLN y 21 104.821 43.068 59.209 1.00 0.64 \ ATOM 26 CG GLN y 21 103.432 42.699 59.723 1.00 0.64 \ ATOM 27 CD GLN y 21 103.414 42.395 61.209 1.00 0.64 \ ATOM 28 OE1 GLN y 21 104.462 42.320 61.848 1.00 0.64 \ ATOM 29 NE2 GLN y 21 102.221 42.205 61.764 1.00 0.64 \ ATOM 30 N LEU y 22 107.442 43.194 57.368 1.00 0.64 \ ATOM 31 CA LEU y 22 108.566 43.965 56.870 1.00 0.64 \ ATOM 32 C LEU y 22 108.704 43.758 55.356 1.00 0.64 \ ATOM 33 O LEU y 22 109.182 44.651 54.642 1.00 0.64 \ ATOM 34 CB LEU y 22 109.852 43.580 57.613 1.00 0.64 \ ATOM 35 CG LEU y 22 109.927 44.030 59.079 1.00 0.64 \ ATOM 36 CD1 LEU y 22 110.694 43.028 59.926 1.00 0.64 \ ATOM 37 CD2 LEU y 22 110.535 45.418 59.212 1.00 0.64 \ ATOM 38 N THR y 23 108.227 42.618 54.851 1.00 0.64 \ ATOM 39 CA THR y 23 108.222 42.422 53.403 1.00 0.64 \ ATOM 40 C THR y 23 107.154 43.292 52.748 1.00 0.64 \ ATOM 41 O THR y 23 107.387 43.908 51.695 1.00 0.64 \ ATOM 42 CB THR y 23 107.945 40.968 53.024 1.00 0.64 \ ATOM 43 OG1 THR y 23 108.730 40.103 53.849 1.00 0.64 \ ATOM 44 CG2 THR y 23 108.282 40.728 51.564 1.00 0.64 \ ATOM 45 N MET y 24 105.994 43.364 53.402 1.00 0.64 \ ATOM 46 CA MET y 24 104.877 44.161 52.893 1.00 0.64 \ ATOM 47 C MET y 24 105.270 45.642 52.838 1.00 0.64 \ ATOM 48 O MET y 24 105.140 46.286 51.794 1.00 0.64 \ ATOM 49 CB MET y 24 103.622 43.977 53.760 1.00 0.64 \ ATOM 50 CG MET y 24 102.958 42.598 53.696 1.00 0.64 \ ATOM 51 SD MET y 24 102.878 41.866 52.058 1.00 0.64 \ ATOM 52 CE MET y 24 104.238 40.702 52.143 1.00 0.64 \ ATOM 53 N ILE y 25 105.721 46.170 53.985 1.00 -1.50 \ ATOM 54 CA ILE y 25 106.159 47.574 54.081 1.00 -1.50 \ ATOM 55 C ILE y 25 107.416 47.832 53.219 1.00 -1.50 \ ATOM 56 O ILE y 25 107.707 48.976 52.867 1.00 -1.50 \ ATOM 57 CB ILE y 25 106.424 48.012 55.579 1.00 -1.50 \ ATOM 58 CG1 ILE y 25 106.666 49.526 55.700 1.00 -1.50 \ ATOM 59 CG2 ILE y 25 107.594 47.258 56.194 1.00 -1.50 \ ATOM 60 CD1 ILE y 25 105.445 50.392 55.451 1.00 -1.50 \ ATOM 61 N ALA y 26 108.125 46.772 52.826 1.00 0.64 \ ATOM 62 CA ALA y 26 109.250 46.939 51.904 1.00 0.64 \ ATOM 63 C ALA y 26 108.733 47.216 50.502 1.00 0.64 \ ATOM 64 O ALA y 26 109.175 48.169 49.841 1.00 0.64 \ ATOM 65 CB ALA y 26 110.159 45.710 51.904 1.00 0.64 \ ATOM 66 N MET y 27 107.777 46.401 50.060 1.00 -1.50 \ ATOM 67 CA MET y 27 107.160 46.633 48.757 1.00 -1.50 \ ATOM 68 C MET y 27 106.340 47.926 48.654 1.00 -1.50 \ ATOM 69 O MET y 27 106.579 48.752 47.743 1.00 -1.50 \ ATOM 70 CB MET y 27 106.234 45.454 48.408 1.00 -1.50 \ ATOM 71 CG MET y 27 106.850 44.342 47.555 1.00 -1.50 \ ATOM 72 SD MET y 27 107.169 42.823 48.486 1.00 -1.50 \ ATOM 73 CE MET y 27 105.504 42.338 48.936 1.00 -1.50 \ ATOM 74 N ILE y 28 105.487 48.172 49.648 1.00 0.64 \ ATOM 75 CA ILE y 28 104.689 49.396 49.695 1.00 0.64 \ ATOM 76 C ILE y 28 105.608 50.604 49.802 1.00 0.64 \ ATOM 77 O ILE y 28 105.375 51.628 49.153 1.00 0.64 \ ATOM 78 CB ILE y 28 103.683 49.378 50.853 1.00 0.64 \ ATOM 79 CG1 ILE y 28 102.570 48.385 50.546 1.00 0.64 \ ATOM 80 CG2 ILE y 28 103.082 50.751 51.065 1.00 0.64 \ ATOM 81 CD1 ILE y 28 101.835 47.932 51.759 1.00 0.64 \ ATOM 82 N GLY y 29 106.632 50.492 50.642 1.00 -1.50 \ ATOM 83 CA GLY y 29 107.574 51.577 50.846 1.00 -1.50 \ ATOM 84 C GLY y 29 108.373 51.922 49.591 1.00 -1.50 \ ATOM 85 O GLY y 29 108.628 53.096 49.317 1.00 -1.50 \ ATOM 86 N ILE y 30 108.780 50.908 48.826 1.00 0.64 \ ATOM 87 CA ILE y 30 109.573 51.163 47.619 1.00 0.64 \ ATOM 88 C ILE y 30 108.737 51.670 46.432 1.00 0.64 \ ATOM 89 O ILE y 30 109.282 52.324 45.535 1.00 0.64 \ ATOM 90 CB ILE y 30 110.389 49.928 47.189 1.00 0.64 \ ATOM 91 CG1 ILE y 30 111.628 50.399 46.419 1.00 0.64 \ ATOM 92 CG2 ILE y 30 109.550 48.976 46.341 1.00 0.64 \ ATOM 93 CD1 ILE y 30 112.713 50.989 47.306 1.00 0.64 \ ATOM 94 N ALA y 31 107.438 51.344 46.417 1.00 0.64 \ ATOM 95 CA ALA y 31 106.552 51.693 45.284 1.00 0.64 \ ATOM 96 C ALA y 31 106.660 53.161 44.800 1.00 0.64 \ ATOM 97 O ALA y 31 106.863 53.402 43.603 1.00 0.64 \ ATOM 98 CB ALA y 31 105.093 51.370 45.642 1.00 0.64 \ ATOM 99 N GLY y 32 106.525 54.125 45.711 1.00 0.64 \ ATOM 100 CA GLY y 32 106.639 55.549 45.396 1.00 0.64 \ ATOM 101 C GLY y 32 107.941 55.967 44.722 1.00 0.64 \ ATOM 102 O GLY y 32 107.931 56.528 43.606 1.00 0.64 \ ATOM 103 N PRO y 33 109.077 55.694 45.388 1.00 0.64 \ ATOM 104 CA PRO y 33 110.391 55.991 44.813 1.00 0.64 \ ATOM 105 C PRO y 33 110.569 55.250 43.500 1.00 0.64 \ ATOM 106 O PRO y 33 111.321 55.688 42.629 1.00 0.64 \ ATOM 107 CB PRO y 33 111.364 55.460 45.870 1.00 0.64 \ ATOM 108 CG PRO y 33 110.615 55.562 47.146 1.00 0.64 \ ATOM 109 CD PRO y 33 109.188 55.234 46.785 1.00 0.64 \ ATOM 110 N MET y 34 109.917 54.104 43.379 1.00 -1.50 \ ATOM 111 CA MET y 34 109.951 53.382 42.128 1.00 -1.50 \ ATOM 112 C MET y 34 109.212 54.206 41.047 1.00 -1.50 \ ATOM 113 O MET y 34 109.713 54.324 39.928 1.00 -1.50 \ ATOM 114 CB MET y 34 109.349 51.986 42.281 1.00 -1.50 \ ATOM 115 CG MET y 34 109.635 51.046 41.107 1.00 -1.50 \ ATOM 116 SD MET y 34 111.400 50.850 40.750 1.00 -1.50 \ ATOM 117 CE MET y 34 111.996 50.258 42.333 1.00 -1.50 \ ATOM 118 N ILE y 35 108.040 54.776 41.376 1.00 -1.50 \ ATOM 119 CA ILE y 35 107.295 55.655 40.440 1.00 -1.50 \ ATOM 120 C ILE y 35 108.139 56.814 39.915 1.00 -1.50 \ ATOM 121 O ILE y 35 108.214 57.078 38.690 1.00 -1.50 \ ATOM 122 CB ILE y 35 106.028 56.281 41.105 1.00 -1.50 \ ATOM 123 CG1 ILE y 35 104.968 55.224 41.399 1.00 -1.50 \ ATOM 124 CG2 ILE y 35 105.414 57.368 40.231 1.00 -1.50 \ ATOM 125 CD1 ILE y 35 103.847 55.736 42.293 1.00 -1.50 \ ATOM 126 N ILE y 36 108.788 57.486 40.868 1.00 0.64 \ ATOM 127 CA ILE y 36 109.638 58.641 40.563 1.00 0.64 \ ATOM 128 C ILE y 36 110.852 58.229 39.723 1.00 0.64 \ ATOM 129 O ILE y 36 111.208 58.914 38.764 1.00 0.64 \ ATOM 130 CB ILE y 36 110.107 59.370 41.845 1.00 0.64 \ ATOM 131 CG1 ILE y 36 108.901 59.748 42.720 1.00 0.64 \ ATOM 132 CG2 ILE y 36 110.966 60.592 41.489 1.00 0.64 \ ATOM 133 CD1 ILE y 36 107.760 60.451 41.978 1.00 0.64 \ ATOM 134 N PHE y 37 111.498 57.129 40.112 1.00 0.64 \ ATOM 135 CA PHE y 37 112.674 56.616 39.412 1.00 0.64 \ ATOM 136 C PHE y 37 112.366 56.248 37.958 1.00 0.64 \ ATOM 137 O PHE y 37 113.097 56.642 37.038 1.00 0.64 \ ATOM 138 CB PHE y 37 113.221 55.394 40.148 1.00 0.64 \ ATOM 139 CG PHE y 37 114.446 54.813 39.522 1.00 0.64 \ ATOM 140 CD1 PHE y 37 115.696 55.356 39.763 1.00 0.64 \ ATOM 141 CD2 PHE y 37 114.345 53.709 38.688 1.00 0.64 \ ATOM 142 CE1 PHE y 37 116.829 54.808 39.179 1.00 0.64 \ ATOM 143 CE2 PHE y 37 115.466 53.159 38.102 1.00 0.64 \ ATOM 144 CZ PHE y 37 116.713 53.706 38.348 1.00 0.64 \ ATOM 145 N LEU y 38 111.307 55.457 37.768 1.00 0.64 \ ATOM 146 CA LEU y 38 110.856 55.057 36.433 1.00 0.64 \ ATOM 147 C LEU y 38 110.544 56.282 35.589 1.00 0.64 \ ATOM 148 O LEU y 38 110.913 56.342 34.414 1.00 0.64 \ ATOM 149 CB LEU y 38 109.635 54.133 36.494 1.00 0.64 \ ATOM 150 CG LEU y 38 109.928 52.685 36.889 1.00 0.64 \ ATOM 151 CD1 LEU y 38 108.630 51.968 37.234 1.00 0.64 \ ATOM 152 CD2 LEU y 38 110.697 51.962 35.785 1.00 0.64 \ ATOM 153 N LEU y 39 109.863 57.257 36.188 1.00 0.64 \ ATOM 154 CA LEU y 39 109.564 58.483 35.459 1.00 0.64 \ ATOM 155 C LEU y 39 110.806 59.307 35.102 1.00 0.64 \ ATOM 156 O LEU y 39 110.857 59.907 34.027 1.00 0.64 \ ATOM 157 CB LEU y 39 108.586 59.324 36.256 1.00 0.64 \ ATOM 158 CG LEU y 39 107.207 58.699 36.098 1.00 0.64 \ ATOM 159 CD1 LEU y 39 106.246 59.364 37.041 1.00 0.64 \ ATOM 160 CD2 LEU y 39 106.735 58.817 34.652 1.00 0.64 \ ATOM 161 N ALA y 40 111.781 59.359 36.007 1.00 0.64 \ ATOM 162 CA ALA y 40 113.036 60.084 35.779 1.00 0.64 \ ATOM 163 C ALA y 40 113.915 59.441 34.681 1.00 0.64 \ ATOM 164 O ALA y 40 114.561 60.160 33.903 1.00 0.64 \ ATOM 165 CB ALA y 40 113.822 60.207 37.091 1.00 0.64 \ ATOM 166 N VAL y 41 113.951 58.100 34.640 1.00 -1.50 \ ATOM 167 CA VAL y 41 114.703 57.349 33.612 1.00 -1.50 \ ATOM 168 C VAL y 41 114.141 57.562 32.190 1.00 -1.50 \ ATOM 169 O VAL y 41 114.909 57.688 31.224 1.00 -1.50 \ ATOM 170 CB VAL y 41 114.729 55.818 33.937 1.00 -1.50 \ ATOM 171 CG1 VAL y 41 115.171 55.000 32.729 1.00 -1.50 \ ATOM 172 CG2 VAL y 41 115.629 55.534 35.132 1.00 -1.50 \ ATOM 173 N ARG y 42 112.812 57.624 32.075 1.00 0.64 \ ATOM 174 CA ARG y 42 112.114 57.741 30.785 1.00 0.64 \ ATOM 175 C ARG y 42 111.802 59.189 30.376 1.00 0.64 \ ATOM 176 O ARG y 42 110.970 59.414 29.490 1.00 0.64 \ ATOM 177 CB ARG y 42 110.824 56.925 30.787 1.00 0.64 \ ATOM 178 CG ARG y 42 111.068 55.430 30.760 1.00 0.64 \ ATOM 179 CD ARG y 42 110.065 54.741 31.637 1.00 0.64 \ ATOM 180 NE ARG y 42 108.710 54.913 31.106 1.00 0.64 \ ATOM 181 CZ ARG y 42 107.912 53.912 30.740 1.00 0.64 \ ATOM 182 NH1 ARG y 42 108.326 52.654 30.871 1.00 0.64 \ ATOM 183 NH2 ARG y 42 106.692 54.167 30.263 1.00 0.64 \ ATOM 184 N ARG y 43 112.409 60.154 31.069 1.00 -1.50 \ ATOM 185 CA ARG y 43 112.158 61.580 30.835 1.00 -1.50 \ ATOM 186 C ARG y 43 110.671 61.890 30.889 1.00 -1.50 \ ATOM 187 O ARG y 43 110.136 62.609 30.046 1.00 -1.50 \ ATOM 188 CB ARG y 43 112.750 62.056 29.504 1.00 -1.50 \ ATOM 189 CG ARG y 43 114.270 62.119 29.476 1.00 -1.50 \ ATOM 190 CD ARG y 43 114.770 62.603 28.118 1.00 -1.50 \ ATOM 191 NE ARG y 43 116.219 62.488 27.974 1.00 -1.50 \ ATOM 192 CZ ARG y 43 116.878 62.691 26.837 1.00 -1.50 \ ATOM 193 NH1 ARG y 43 116.219 63.037 25.739 1.00 -1.50 \ ATOM 194 NH2 ARG y 43 118.200 62.565 26.800 1.00 -1.50 \ ATOM 195 N GLY y 44 110.008 61.316 31.884 1.00 0.64 \ ATOM 196 CA GLY y 44 108.583 61.488 32.045 1.00 0.64 \ ATOM 197 C GLY y 44 108.291 62.899 32.509 1.00 0.64 \ ATOM 198 O GLY y 44 109.207 63.679 32.790 1.00 0.64 \ ATOM 199 N ASN y 45 107.007 63.223 32.598 1.00 -1.50 \ ATOM 200 CA ASN y 45 106.576 64.567 32.939 1.00 -1.50 \ ATOM 201 C ASN y 45 106.559 64.832 34.451 1.00 -1.50 \ ATOM 202 O ASN y 45 105.494 65.036 35.030 1.00 -1.50 \ ATOM 203 CB ASN y 45 105.196 64.830 32.335 1.00 -1.50 \ ATOM 204 CG ASN y 45 104.798 66.283 32.411 1.00 -1.50 \ ATOM 205 OD1 ASN y 45 105.651 67.170 32.465 1.00 -1.50 \ ATOM 206 ND2 ASN y 45 103.497 66.539 32.415 1.00 -1.50 \ ATOM 207 N LEU y 46 107.736 64.801 35.083 1.00 0.64 \ ATOM 208 CA LEU y 46 107.879 65.119 36.512 1.00 0.64 \ ATOM 209 C LEU y 46 107.746 66.627 36.760 1.00 0.64 \ ATOM 210 O LEU y 46 107.419 67.074 37.858 1.00 0.64 \ ATOM 211 CB LEU y 46 109.226 64.622 37.062 1.00 0.64 \ ATOM 212 CG LEU y 46 109.485 63.119 37.185 1.00 0.64 \ ATOM 213 CD1 LEU y 46 110.913 62.861 37.606 1.00 0.64 \ ATOM 214 CD2 LEU y 46 108.536 62.510 38.183 1.00 0.64 \ ATOM 215 OXT LEU y 46 107.968 67.457 35.879 1.00 0.64 \ """, "e5e79y1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5e79y1_csv", state=0, origin=1) cmd.zoom("e5e79y1_csv", animate=-1)