cmd.read_pdbstr("""\ ATOM 1 N VAL y 18 11.203 -46.541 293.741 1.00 -1.50 \ ATOM 2 CA VAL y 18 12.139 -45.423 293.802 1.00 -1.50 \ ATOM 3 C VAL y 18 12.883 -45.220 292.483 1.00 -1.50 \ ATOM 4 O VAL y 18 13.146 -44.086 292.080 1.00 -1.50 \ ATOM 5 CB VAL y 18 13.173 -45.600 294.943 1.00 -1.50 \ ATOM 6 CG1 VAL y 18 13.899 -44.292 295.221 1.00 -1.50 \ ATOM 7 CG2 VAL y 18 12.494 -46.105 296.204 1.00 -1.50 \ ATOM 8 N ILE y 19 13.234 -46.313 291.814 1.00 0.64 \ ATOM 9 CA ILE y 19 13.864 -46.206 290.504 1.00 0.64 \ ATOM 10 C ILE y 19 12.898 -45.824 289.374 1.00 0.64 \ ATOM 11 O ILE y 19 13.263 -45.071 288.460 1.00 0.64 \ ATOM 12 CB ILE y 19 14.541 -47.551 290.129 1.00 0.64 \ ATOM 13 CG1 ILE y 19 15.227 -48.176 291.350 1.00 0.64 \ ATOM 14 CG2 ILE y 19 15.509 -47.378 288.967 1.00 0.64 \ ATOM 15 CD1 ILE y 19 15.317 -49.689 291.297 1.00 0.64 \ ATOM 16 N ALA y 20 11.660 -46.311 289.458 1.00 0.64 \ ATOM 17 CA ALA y 20 10.604 -45.944 288.501 1.00 0.64 \ ATOM 18 C ALA y 20 10.226 -44.460 288.541 1.00 0.64 \ ATOM 19 O ALA y 20 9.994 -43.827 287.497 1.00 0.64 \ ATOM 20 CB ALA y 20 9.368 -46.793 288.744 1.00 0.64 \ ATOM 21 N GLN y 21 10.209 -43.910 289.750 1.00 0.64 \ ATOM 22 CA GLN y 21 9.919 -42.498 289.973 1.00 0.64 \ ATOM 23 C GLN y 21 11.009 -41.609 289.401 1.00 0.64 \ ATOM 24 O GLN y 21 10.728 -40.618 288.717 1.00 0.64 \ ATOM 25 CB GLN y 21 9.740 -42.231 291.470 1.00 0.64 \ ATOM 26 CG GLN y 21 8.474 -42.837 292.034 1.00 0.64 \ ATOM 27 CD GLN y 21 8.346 -42.692 293.534 1.00 0.64 \ ATOM 28 OE1 GLN y 21 7.256 -42.467 294.055 1.00 0.64 \ ATOM 29 NE2 GLN y 21 9.455 -42.830 294.235 1.00 0.64 \ ATOM 30 N LEU y 22 12.252 -41.968 289.680 1.00 0.64 \ ATOM 31 CA LEU y 22 13.389 -41.210 289.174 1.00 0.64 \ ATOM 32 C LEU y 22 13.461 -41.318 287.649 1.00 0.64 \ ATOM 33 O LEU y 22 13.915 -40.393 286.961 1.00 0.64 \ ATOM 34 CB LEU y 22 14.683 -41.708 289.824 1.00 0.64 \ ATOM 35 CG LEU y 22 14.851 -41.347 291.303 1.00 0.64 \ ATOM 36 CD1 LEU y 22 15.956 -42.174 291.962 1.00 0.64 \ ATOM 37 CD2 LEU y 22 15.110 -39.849 291.477 1.00 0.64 \ ATOM 38 N THR y 23 13.012 -42.445 287.108 1.00 0.64 \ ATOM 39 CA THR y 23 13.011 -42.581 285.661 1.00 0.64 \ ATOM 40 C THR y 23 11.919 -41.746 284.977 1.00 0.64 \ ATOM 41 O THR y 23 12.179 -41.103 283.937 1.00 0.64 \ ATOM 42 CB THR y 23 12.843 -44.056 285.252 1.00 0.64 \ ATOM 43 OG1 THR y 23 13.774 -44.860 285.983 1.00 0.64 \ ATOM 44 CG2 THR y 23 13.096 -44.228 283.765 1.00 0.64 \ ATOM 45 N MET y 24 10.723 -41.699 285.574 1.00 0.64 \ ATOM 46 CA MET y 24 9.673 -40.845 285.019 1.00 0.64 \ ATOM 47 C MET y 24 10.040 -39.372 285.110 1.00 0.64 \ ATOM 48 O MET y 24 9.832 -38.612 284.148 1.00 0.64 \ ATOM 49 CB MET y 24 8.337 -41.080 285.748 1.00 0.64 \ ATOM 50 CG MET y 24 7.770 -42.495 285.689 1.00 0.64 \ ATOM 51 SD MET y 24 7.801 -43.279 284.067 1.00 0.64 \ ATOM 52 CE MET y 24 9.195 -44.384 284.269 1.00 0.64 \ ATOM 53 N ILE y 25 10.590 -38.985 286.263 1.00 -1.50 \ ATOM 54 CA ILE y 25 11.075 -37.618 286.474 1.00 -1.50 \ ATOM 55 C ILE y 25 12.102 -37.286 285.398 1.00 -1.50 \ ATOM 56 O ILE y 25 12.001 -36.242 284.793 1.00 -1.50 \ ATOM 57 CB ILE y 25 11.607 -37.284 287.901 1.00 -1.50 \ ATOM 58 CG1 ILE y 25 11.870 -35.780 287.985 1.00 -1.50 \ ATOM 59 CG2 ILE y 25 12.872 -37.990 288.251 1.00 -1.50 \ ATOM 60 CD1 ILE y 25 10.610 -34.944 287.905 1.00 -1.50 \ ATOM 61 N ALA y 26 13.107 -38.134 285.185 1.00 0.64 \ ATOM 62 CA ALA y 26 14.126 -37.823 284.181 1.00 0.64 \ ATOM 63 C ALA y 26 13.561 -37.714 282.759 1.00 0.64 \ ATOM 64 O ALA y 26 13.982 -36.829 282.006 1.00 0.64 \ ATOM 65 CB ALA y 26 15.226 -38.867 284.218 1.00 0.64 \ ATOM 66 N MET y 27 12.595 -38.554 282.389 1.00 -1.50 \ ATOM 67 CA MET y 27 12.023 -38.441 281.038 1.00 -1.50 \ ATOM 68 C MET y 27 11.219 -37.130 280.872 1.00 -1.50 \ ATOM 69 O MET y 27 11.448 -36.344 279.924 1.00 -1.50 \ ATOM 70 CB MET y 27 11.128 -39.644 280.709 1.00 -1.50 \ ATOM 71 CG MET y 27 11.894 -40.890 280.280 1.00 -1.50 \ ATOM 72 SD MET y 27 10.977 -42.058 279.254 1.00 -1.50 \ ATOM 73 CE MET y 27 10.946 -41.228 277.673 1.00 -1.50 \ ATOM 74 N ILE y 28 10.335 -36.854 281.829 1.00 0.64 \ ATOM 75 CA ILE y 28 9.540 -35.624 281.790 1.00 0.64 \ ATOM 76 C ILE y 28 10.394 -34.356 281.933 1.00 0.64 \ ATOM 77 O ILE y 28 10.144 -33.351 281.261 1.00 0.64 \ ATOM 78 CB ILE y 28 8.485 -35.640 282.918 1.00 0.64 \ ATOM 79 CG1 ILE y 28 7.449 -36.738 282.666 1.00 0.64 \ ATOM 80 CG2 ILE y 28 7.831 -34.279 283.079 1.00 0.64 \ ATOM 81 CD1 ILE y 28 6.676 -37.125 283.897 1.00 0.64 \ ATOM 82 N GLY y 29 11.390 -34.403 282.807 1.00 -1.50 \ ATOM 83 CA GLY y 29 12.275 -33.277 283.040 1.00 -1.50 \ ATOM 84 C GLY y 29 13.119 -32.977 281.815 1.00 -1.50 \ ATOM 85 O GLY y 29 13.376 -31.814 281.498 1.00 -1.50 \ ATOM 86 N ILE y 30 13.556 -34.028 281.121 1.00 0.64 \ ATOM 87 CA ILE y 30 14.367 -33.853 279.917 1.00 0.64 \ ATOM 88 C ILE y 30 13.540 -33.344 278.734 1.00 0.64 \ ATOM 89 O ILE y 30 14.078 -32.655 277.863 1.00 0.64 \ ATOM 90 CB ILE y 30 15.123 -35.139 279.511 1.00 0.64 \ ATOM 91 CG1 ILE y 30 16.365 -34.758 278.702 1.00 0.64 \ ATOM 92 CG2 ILE y 30 14.252 -36.058 278.671 1.00 0.64 \ ATOM 93 CD1 ILE y 30 17.546 -34.340 279.546 1.00 0.64 \ ATOM 94 N ALA y 31 12.244 -33.670 278.702 1.00 0.64 \ ATOM 95 CA ALA y 31 11.416 -33.368 277.525 1.00 0.64 \ ATOM 96 C ALA y 31 11.474 -31.892 277.083 1.00 0.64 \ ATOM 97 O ALA y 31 11.566 -31.609 275.888 1.00 0.64 \ ATOM 98 CB ALA y 31 9.971 -33.770 277.787 1.00 0.64 \ ATOM 99 N GLY y 32 11.422 -30.961 278.028 1.00 0.64 \ ATOM 100 CA GLY y 32 11.498 -29.540 277.708 1.00 0.64 \ ATOM 101 C GLY y 32 12.782 -29.047 277.039 1.00 0.64 \ ATOM 102 O GLY y 32 12.748 -28.504 275.915 1.00 0.64 \ ATOM 103 N PRO y 33 13.927 -29.217 277.728 1.00 0.64 \ ATOM 104 CA PRO y 33 15.249 -28.918 277.170 1.00 0.64 \ ATOM 105 C PRO y 33 15.452 -29.649 275.862 1.00 0.64 \ ATOM 106 O PRO y 33 16.222 -29.207 275.016 1.00 0.64 \ ATOM 107 CB PRO y 33 16.205 -29.461 278.229 1.00 0.64 \ ATOM 108 CG PRO y 33 15.477 -29.304 279.498 1.00 0.64 \ ATOM 109 CD PRO y 33 14.017 -29.561 279.158 1.00 0.64 \ ATOM 110 N MET y 34 14.793 -30.792 275.728 1.00 -1.50 \ ATOM 111 CA MET y 34 14.864 -31.556 274.500 1.00 -1.50 \ ATOM 112 C MET y 34 14.169 -30.789 273.370 1.00 -1.50 \ ATOM 113 O MET y 34 14.699 -30.700 272.271 1.00 -1.50 \ ATOM 114 CB MET y 34 14.241 -32.938 274.675 1.00 -1.50 \ ATOM 115 CG MET y 34 14.445 -33.843 273.474 1.00 -1.50 \ ATOM 116 SD MET y 34 16.179 -33.877 272.957 1.00 -1.50 \ ATOM 117 CE MET y 34 16.983 -34.446 274.456 1.00 -1.50 \ ATOM 118 N ILE y 35 12.982 -30.246 273.649 1.00 -1.50 \ ATOM 119 CA ILE y 35 12.241 -29.410 272.689 1.00 -1.50 \ ATOM 120 C ILE y 35 13.052 -28.200 272.237 1.00 -1.50 \ ATOM 121 O ILE y 35 13.148 -27.880 271.031 1.00 -1.50 \ ATOM 122 CB ILE y 35 10.912 -28.890 273.282 1.00 -1.50 \ ATOM 123 CG1 ILE y 35 9.967 -30.043 273.612 1.00 -1.50 \ ATOM 124 CG2 ILE y 35 10.247 -27.902 272.330 1.00 -1.50 \ ATOM 125 CD1 ILE y 35 8.876 -29.658 274.592 1.00 -1.50 \ ATOM 126 N ILE y 36 13.679 -27.560 273.220 1.00 0.64 \ ATOM 127 CA ILE y 36 14.505 -26.388 272.955 1.00 0.64 \ ATOM 128 C ILE y 36 15.724 -26.761 272.113 1.00 0.64 \ ATOM 129 O ILE y 36 16.042 -26.080 271.140 1.00 0.64 \ ATOM 130 CB ILE y 36 14.958 -25.718 274.261 1.00 0.64 \ ATOM 131 CG1 ILE y 36 13.741 -25.341 275.106 1.00 0.64 \ ATOM 132 CG2 ILE y 36 15.790 -24.495 273.965 1.00 0.64 \ ATOM 133 CD1 ILE y 36 12.776 -24.402 274.408 1.00 0.64 \ ATOM 134 N PHE y 37 16.398 -27.843 272.495 1.00 0.64 \ ATOM 135 CA PHE y 37 17.575 -28.336 271.782 1.00 0.64 \ ATOM 136 C PHE y 37 17.261 -28.718 270.338 1.00 0.64 \ ATOM 137 O PHE y 37 18.027 -28.406 269.418 1.00 0.64 \ ATOM 138 CB PHE y 37 18.153 -29.539 272.520 1.00 0.64 \ ATOM 139 CG PHE y 37 19.366 -30.125 271.870 1.00 0.64 \ ATOM 140 CD1 PHE y 37 20.615 -29.553 272.029 1.00 0.64 \ ATOM 141 CD2 PHE y 37 19.248 -31.268 271.097 1.00 0.64 \ ATOM 142 CE1 PHE y 37 21.728 -30.111 271.425 1.00 0.64 \ ATOM 143 CE2 PHE y 37 20.348 -31.829 270.492 1.00 0.64 \ ATOM 144 CZ PHE y 37 21.593 -31.251 270.656 1.00 0.64 \ ATOM 145 N LEU y 38 16.132 -29.391 270.148 1.00 0.64 \ ATOM 146 CA LEU y 38 15.710 -29.818 268.824 1.00 0.64 \ ATOM 147 C LEU y 38 15.470 -28.598 267.964 1.00 0.64 \ ATOM 148 O LEU y 38 15.912 -28.547 266.817 1.00 0.64 \ ATOM 149 CB LEU y 38 14.447 -30.680 268.883 1.00 0.64 \ ATOM 150 CG LEU y 38 14.586 -32.087 269.461 1.00 0.64 \ ATOM 151 CD1 LEU y 38 13.222 -32.757 269.569 1.00 0.64 \ ATOM 152 CD2 LEU y 38 15.549 -32.926 268.615 1.00 0.64 \ ATOM 153 N LEU y 39 14.761 -27.616 268.515 1.00 0.64 \ ATOM 154 CA LEU y 39 14.503 -26.404 267.750 1.00 0.64 \ ATOM 155 C LEU y 39 15.764 -25.583 267.450 1.00 0.64 \ ATOM 156 O LEU y 39 15.886 -25.008 266.367 1.00 0.64 \ ATOM 157 CB LEU y 39 13.476 -25.553 268.484 1.00 0.64 \ ATOM 158 CG LEU y 39 12.094 -26.176 268.308 1.00 0.64 \ ATOM 159 CD1 LEU y 39 11.096 -25.499 269.206 1.00 0.64 \ ATOM 160 CD2 LEU y 39 11.660 -26.118 266.850 1.00 0.64 \ ATOM 161 N ALA y 40 16.692 -25.529 268.404 1.00 0.64 \ ATOM 162 CA ALA y 40 17.962 -24.820 268.222 1.00 0.64 \ ATOM 163 C ALA y 40 18.829 -25.467 267.142 1.00 0.64 \ ATOM 164 O ALA y 40 19.536 -24.779 266.402 1.00 0.64 \ ATOM 165 CB ALA y 40 18.722 -24.757 269.536 1.00 0.64 \ ATOM 166 N VAL y 41 18.762 -26.793 267.067 1.00 -1.50 \ ATOM 167 CA VAL y 41 19.514 -27.583 266.092 1.00 -1.50 \ ATOM 168 C VAL y 41 18.987 -27.343 264.672 1.00 -1.50 \ ATOM 169 O VAL y 41 19.762 -27.193 263.719 1.00 -1.50 \ ATOM 170 CB VAL y 41 19.464 -29.091 266.419 1.00 -1.50 \ ATOM 171 CG1 VAL y 41 19.711 -29.934 265.160 1.00 -1.50 \ ATOM 172 CG2 VAL y 41 20.485 -29.421 267.501 1.00 -1.50 \ ATOM 173 N ARG y 42 17.664 -27.276 264.550 1.00 0.64 \ ATOM 174 CA ARG y 42 17.008 -27.116 263.257 1.00 0.64 \ ATOM 175 C ARG y 42 16.595 -25.678 262.973 1.00 0.64 \ ATOM 176 O ARG y 42 15.610 -25.439 262.268 1.00 0.64 \ ATOM 177 CB ARG y 42 15.758 -27.989 263.194 1.00 0.64 \ ATOM 178 CG ARG y 42 16.009 -29.475 263.146 1.00 0.64 \ ATOM 179 CD ARG y 42 14.965 -30.187 263.989 1.00 0.64 \ ATOM 180 NE ARG y 42 13.613 -29.999 263.462 1.00 0.64 \ ATOM 181 CZ ARG y 42 12.799 -30.992 263.117 1.00 0.64 \ ATOM 182 NH1 ARG y 42 13.203 -32.249 263.235 1.00 0.64 \ ATOM 183 NH2 ARG y 42 11.587 -30.730 262.648 1.00 0.64 \ ATOM 184 N ARG y 43 17.369 -24.733 263.504 1.00 -1.50 \ ATOM 185 CA ARG y 43 17.116 -23.303 263.311 1.00 -1.50 \ ATOM 186 C ARG y 43 15.628 -22.977 263.423 1.00 -1.50 \ ATOM 187 O ARG y 43 15.059 -22.329 262.547 1.00 -1.50 \ ATOM 188 CB ARG y 43 17.621 -22.891 261.934 1.00 -1.50 \ ATOM 189 CG ARG y 43 19.080 -23.184 261.682 1.00 -1.50 \ ATOM 190 CD ARG y 43 19.649 -22.306 260.590 1.00 -1.50 \ ATOM 191 NE ARG y 43 21.080 -22.518 260.403 1.00 -1.50 \ ATOM 192 CZ ARG y 43 21.755 -22.100 259.337 1.00 -1.50 \ ATOM 193 NH1 ARG y 43 21.122 -21.459 258.364 1.00 -1.50 \ ATOM 194 NH2 ARG y 43 23.057 -22.336 259.233 1.00 -1.50 \ ATOM 195 N GLY y 44 15.011 -23.421 264.512 1.00 0.64 \ ATOM 196 CA GLY y 44 13.588 -23.229 264.702 1.00 0.64 \ ATOM 197 C GLY y 44 13.192 -21.834 265.149 1.00 0.64 \ ATOM 198 O GLY y 44 14.049 -20.993 265.431 1.00 0.64 \ ATOM 199 N ASN y 45 11.887 -21.589 265.222 1.00 -1.50 \ ATOM 200 CA ASN y 45 11.378 -20.272 265.578 1.00 -1.50 \ ATOM 201 C ASN y 45 11.441 -20.031 267.082 1.00 -1.50 \ ATOM 202 O ASN y 45 10.421 -19.772 267.717 1.00 -1.50 \ ATOM 203 CB ASN y 45 9.947 -20.087 265.074 1.00 -1.50 \ ATOM 204 CG ASN y 45 9.600 -18.628 264.833 1.00 -1.50 \ ATOM 205 OD1 ASN y 45 10.488 -17.779 264.730 1.00 -1.50 \ ATOM 206 ND2 ASN y 45 8.308 -18.327 264.764 1.00 -1.50 \ ATOM 207 N LEU y 46 12.640 -20.126 267.651 1.00 0.64 \ ATOM 208 CA LEU y 46 12.839 -19.838 269.064 1.00 0.64 \ ATOM 209 C LEU y 46 12.693 -18.339 269.331 1.00 0.64 \ ATOM 210 O LEU y 46 12.411 -17.906 270.448 1.00 0.64 \ ATOM 211 CB LEU y 46 14.212 -20.333 269.524 1.00 0.64 \ ATOM 212 CG LEU y 46 14.399 -21.849 269.636 1.00 0.64 \ ATOM 213 CD1 LEU y 46 15.809 -22.185 270.081 1.00 0.64 \ ATOM 214 CD2 LEU y 46 13.383 -22.447 270.586 1.00 0.64 \ ATOM 215 OXT LEU y 46 12.847 -17.523 268.422 1.00 0.64 \ """, "e5e7cy1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5e7cy1_csv", state=0, origin=1) cmd.zoom("e5e7cy1_csv", animate=-1)