cmd.read_pdbstr("""\ ATOM 1 N VAL y 18 -4.813 -53.483 19.550 1.00 -1.50 \ ATOM 2 CA VAL y 18 -5.968 -52.782 19.007 1.00 -1.50 \ ATOM 3 C VAL y 18 -6.850 -52.280 20.142 1.00 -1.50 \ ATOM 4 O VAL y 18 -6.917 -51.081 20.412 1.00 -1.50 \ ATOM 5 CB VAL y 18 -6.813 -53.695 18.120 1.00 -1.50 \ ATOM 6 CG1 VAL y 18 -7.690 -52.849 17.213 1.00 -1.50 \ ATOM 7 CG2 VAL y 18 -5.922 -54.613 17.301 1.00 -1.50 \ ATOM 8 N ILE y 19 -7.533 -53.215 20.796 1.00 0.64 \ ATOM 9 CA ILE y 19 -8.277 -52.923 22.016 1.00 0.64 \ ATOM 10 C ILE y 19 -7.273 -52.570 23.108 1.00 0.64 \ ATOM 11 O ILE y 19 -7.583 -51.852 24.065 1.00 0.64 \ ATOM 12 CB ILE y 19 -9.126 -54.138 22.456 1.00 0.64 \ ATOM 13 CG1 ILE y 19 -10.055 -54.580 21.321 1.00 0.64 \ ATOM 14 CG2 ILE y 19 -9.917 -53.833 23.733 1.00 0.64 \ ATOM 15 CD1 ILE y 19 -10.927 -55.770 21.673 1.00 0.64 \ ATOM 16 N ALA y 20 -6.053 -53.069 22.930 1.00 0.64 \ ATOM 17 CA ALA y 20 -4.957 -52.812 23.848 1.00 0.64 \ ATOM 18 C ALA y 20 -4.638 -51.323 23.898 1.00 0.64 \ ATOM 19 O ALA y 20 -4.532 -50.738 24.976 1.00 0.64 \ ATOM 20 CB ALA y 20 -3.730 -53.605 23.430 1.00 0.64 \ ATOM 21 N GLN y 21 -4.482 -50.721 22.723 1.00 0.64 \ ATOM 22 CA GLN y 21 -4.222 -49.290 22.602 1.00 0.64 \ ATOM 23 C GLN y 21 -5.340 -48.425 23.197 1.00 0.64 \ ATOM 24 O GLN y 21 -5.066 -47.413 23.844 1.00 0.64 \ ATOM 25 CB GLN y 21 -3.992 -48.928 21.138 1.00 0.64 \ ATOM 26 CG GLN y 21 -2.677 -49.434 20.587 1.00 0.64 \ ATOM 27 CD GLN y 21 -2.651 -49.423 19.079 1.00 0.64 \ ATOM 28 OE1 GLN y 21 -3.697 -49.391 18.433 1.00 0.64 \ ATOM 29 NE2 GLN y 21 -1.454 -49.446 18.506 1.00 0.64 \ ATOM 30 N LEU y 22 -6.592 -48.817 22.968 1.00 0.64 \ ATOM 31 CA LEU y 22 -7.731 -48.094 23.533 1.00 0.64 \ ATOM 32 C LEU y 22 -7.763 -48.198 25.056 1.00 0.64 \ ATOM 33 O LEU y 22 -8.086 -47.231 25.747 1.00 0.64 \ ATOM 34 CB LEU y 22 -9.058 -48.589 22.948 1.00 0.64 \ ATOM 35 CG LEU y 22 -9.294 -48.379 21.456 1.00 0.64 \ ATOM 36 CD1 LEU y 22 -10.735 -48.695 21.085 1.00 0.64 \ ATOM 37 CD2 LEU y 22 -8.960 -46.951 21.099 1.00 0.64 \ ATOM 38 N THR y 23 -7.418 -49.369 25.579 1.00 0.64 \ ATOM 39 CA THR y 23 -7.345 -49.553 27.023 1.00 0.64 \ ATOM 40 C THR y 23 -6.243 -48.691 27.628 1.00 0.64 \ ATOM 41 O THR y 23 -6.466 -47.995 28.621 1.00 0.64 \ ATOM 42 CB THR y 23 -7.082 -51.008 27.379 1.00 0.64 \ ATOM 43 OG1 THR y 23 -7.944 -51.840 26.598 1.00 0.64 \ ATOM 44 CG2 THR y 23 -7.345 -51.241 28.854 1.00 0.64 \ ATOM 45 N MET y 24 -5.058 -48.750 27.025 1.00 0.64 \ ATOM 46 CA MET y 24 -3.931 -47.928 27.455 1.00 0.64 \ ATOM 47 C MET y 24 -4.307 -46.450 27.483 1.00 0.64 \ ATOM 48 O MET y 24 -4.130 -45.785 28.512 1.00 0.64 \ ATOM 49 CB MET y 24 -2.705 -48.127 26.558 1.00 0.64 \ ATOM 50 CG MET y 24 -2.124 -49.515 26.602 1.00 0.64 \ ATOM 51 SD MET y 24 -2.351 -50.228 28.230 1.00 0.64 \ ATOM 52 CE MET y 24 -1.082 -49.389 29.164 1.00 0.64 \ ATOM 53 N ILE y 25 -4.829 -45.942 26.365 1.00 -1.50 \ ATOM 54 CA ILE y 25 -5.209 -44.532 26.291 1.00 -1.50 \ ATOM 55 C ILE y 25 -6.319 -44.203 27.292 1.00 -1.50 \ ATOM 56 O ILE y 25 -6.407 -43.083 27.783 1.00 -1.50 \ ATOM 57 CB ILE y 25 -5.589 -44.083 24.843 1.00 -1.50 \ ATOM 58 CG1 ILE y 25 -5.694 -42.563 24.741 1.00 -1.50 \ ATOM 59 CG2 ILE y 25 -6.887 -44.699 24.399 1.00 -1.50 \ ATOM 60 CD1 ILE y 25 -4.454 -41.830 25.178 1.00 -1.50 \ ATOM 61 N ALA y 26 -7.141 -45.190 27.627 1.00 0.64 \ ATOM 62 CA ALA y 26 -8.166 -44.986 28.644 1.00 0.64 \ ATOM 63 C ALA y 26 -7.575 -44.804 30.048 1.00 0.64 \ ATOM 64 O ALA y 26 -7.904 -43.838 30.733 1.00 0.64 \ ATOM 65 CB ALA y 26 -9.164 -46.132 28.631 1.00 0.64 \ ATOM 66 N MET y 27 -6.712 -45.727 30.475 1.00 -1.50 \ ATOM 67 CA MET y 27 -6.092 -45.631 31.801 1.00 -1.50 \ ATOM 68 C MET y 27 -5.239 -44.376 31.908 1.00 -1.50 \ ATOM 69 O MET y 27 -5.335 -43.617 32.888 1.00 -1.50 \ ATOM 70 CB MET y 27 -5.227 -46.858 32.096 1.00 -1.50 \ ATOM 71 CG MET y 27 -6.011 -48.130 32.369 1.00 -1.50 \ ATOM 72 SD MET y 27 -5.297 -49.572 31.553 1.00 -1.50 \ ATOM 73 CE MET y 27 -3.596 -49.489 32.114 1.00 -1.50 \ ATOM 74 N ILE y 28 -4.403 -44.176 30.889 1.00 0.64 \ ATOM 75 CA ILE y 28 -3.519 -43.020 30.803 1.00 0.64 \ ATOM 76 C ILE y 28 -4.320 -41.722 30.867 1.00 0.64 \ ATOM 77 O ILE y 28 -4.034 -40.844 31.685 1.00 0.64 \ ATOM 78 CB ILE y 28 -2.674 -43.080 29.512 1.00 0.64 \ ATOM 79 CG1 ILE y 28 -1.576 -44.133 29.657 1.00 0.64 \ ATOM 80 CG2 ILE y 28 -2.049 -41.731 29.185 1.00 0.64 \ ATOM 81 CD1 ILE y 28 -0.622 -44.179 28.489 1.00 0.64 \ ATOM 82 N GLY y 29 -5.354 -41.633 30.039 1.00 -1.50 \ ATOM 83 CA GLY y 29 -6.198 -40.458 29.979 1.00 -1.50 \ ATOM 84 C GLY y 29 -6.986 -40.189 31.245 1.00 -1.50 \ ATOM 85 O GLY y 29 -7.124 -39.043 31.661 1.00 -1.50 \ ATOM 86 N ILE y 30 -7.521 -41.240 31.855 1.00 0.64 \ ATOM 87 CA ILE y 30 -8.327 -41.054 33.049 1.00 0.64 \ ATOM 88 C ILE y 30 -7.449 -40.688 34.230 1.00 0.64 \ ATOM 89 O ILE y 30 -7.924 -40.060 35.167 1.00 0.64 \ ATOM 90 CB ILE y 30 -9.212 -42.282 33.381 1.00 0.64 \ ATOM 91 CG1 ILE y 30 -10.551 -41.816 33.949 1.00 0.64 \ ATOM 92 CG2 ILE y 30 -8.548 -43.183 34.410 1.00 0.64 \ ATOM 93 CD1 ILE y 30 -11.265 -40.812 33.082 1.00 0.64 \ ATOM 94 N ALA y 31 -6.168 -41.055 34.162 1.00 0.64 \ ATOM 95 CA ALA y 31 -5.228 -40.761 35.245 1.00 0.64 \ ATOM 96 C ALA y 31 -5.192 -39.278 35.587 1.00 0.64 \ ATOM 97 O ALA y 31 -5.004 -38.907 36.749 1.00 0.64 \ ATOM 98 CB ALA y 31 -3.844 -41.236 34.892 1.00 0.64 \ ATOM 99 N GLY y 32 -5.357 -38.433 34.569 1.00 0.64 \ ATOM 100 CA GLY y 32 -5.274 -36.999 34.764 1.00 0.64 \ ATOM 101 C GLY y 32 -6.311 -36.474 35.738 1.00 0.64 \ ATOM 102 O GLY y 32 -5.964 -35.996 36.824 1.00 0.64 \ ATOM 103 N PRO y 33 -7.592 -36.544 35.345 1.00 0.64 \ ATOM 104 CA PRO y 33 -8.724 -36.128 36.184 1.00 0.64 \ ATOM 105 C PRO y 33 -8.771 -36.857 37.526 1.00 0.64 \ ATOM 106 O PRO y 33 -9.264 -36.294 38.514 1.00 0.64 \ ATOM 107 CB PRO y 33 -9.936 -36.489 35.323 1.00 0.64 \ ATOM 108 CG PRO y 33 -9.436 -36.345 33.914 1.00 0.64 \ ATOM 109 CD PRO y 33 -8.009 -36.827 33.958 1.00 0.64 \ ATOM 110 N MET y 34 -8.261 -38.089 37.548 1.00 -1.50 \ ATOM 111 CA MET y 34 -8.163 -38.889 38.766 1.00 -1.50 \ ATOM 112 C MET y 34 -7.390 -38.147 39.850 1.00 -1.50 \ ATOM 113 O MET y 34 -7.775 -38.158 41.021 1.00 -1.50 \ ATOM 114 CB MET y 34 -7.462 -40.214 38.468 1.00 -1.50 \ ATOM 115 CG MET y 34 -7.225 -41.117 39.685 1.00 -1.50 \ ATOM 116 SD MET y 34 -8.649 -42.056 40.259 1.00 -1.50 \ ATOM 117 CE MET y 34 -8.958 -43.092 38.834 1.00 -1.50 \ ATOM 118 N ILE y 35 -6.286 -37.520 39.456 1.00 -1.50 \ ATOM 119 CA ILE y 35 -5.475 -36.744 40.387 1.00 -1.50 \ ATOM 120 C ILE y 35 -6.262 -35.542 40.898 1.00 -1.50 \ ATOM 121 O ILE y 35 -6.252 -35.251 42.096 1.00 -1.50 \ ATOM 122 CB ILE y 35 -4.137 -36.297 39.749 1.00 -1.50 \ ATOM 123 CG1 ILE y 35 -3.312 -37.525 39.351 1.00 -1.50 \ ATOM 124 CG2 ILE y 35 -3.333 -35.432 40.714 1.00 -1.50 \ ATOM 125 CD1 ILE y 35 -2.062 -37.200 38.552 1.00 -1.50 \ ATOM 126 N ILE y 36 -6.951 -34.853 39.993 1.00 0.64 \ ATOM 127 CA ILE y 36 -7.767 -33.708 40.378 1.00 0.64 \ ATOM 128 C ILE y 36 -8.922 -34.103 41.293 1.00 0.64 \ ATOM 129 O ILE y 36 -9.185 -33.442 42.305 1.00 0.64 \ ATOM 130 CB ILE y 36 -8.363 -33.012 39.171 1.00 0.64 \ ATOM 131 CG1 ILE y 36 -7.247 -32.508 38.243 1.00 0.64 \ ATOM 132 CG2 ILE y 36 -9.280 -31.892 39.618 1.00 0.64 \ ATOM 133 CD1 ILE y 36 -6.091 -31.817 38.954 1.00 0.64 \ ATOM 134 N PHE y 37 -9.619 -35.171 40.916 1.00 0.64 \ ATOM 135 CA PHE y 37 -10.740 -35.684 41.700 1.00 0.64 \ ATOM 136 C PHE y 37 -10.312 -36.077 43.116 1.00 0.64 \ ATOM 137 O PHE y 37 -10.954 -35.692 44.097 1.00 0.64 \ ATOM 138 CB PHE y 37 -11.374 -36.882 40.982 1.00 0.64 \ ATOM 139 CG PHE y 37 -12.526 -37.503 41.725 1.00 0.64 \ ATOM 140 CD1 PHE y 37 -13.811 -36.999 41.579 1.00 0.64 \ ATOM 141 CD2 PHE y 37 -12.324 -38.601 42.562 1.00 0.64 \ ATOM 142 CE1 PHE y 37 -14.874 -37.570 42.259 1.00 0.64 \ ATOM 143 CE2 PHE y 37 -13.381 -39.181 43.251 1.00 0.64 \ ATOM 144 CZ PHE y 37 -14.657 -38.669 43.098 1.00 0.64 \ ATOM 145 N LEU y 38 -9.223 -36.835 43.210 1.00 0.64 \ ATOM 146 CA LEU y 38 -8.713 -37.309 44.493 1.00 0.64 \ ATOM 147 C LEU y 38 -8.302 -36.154 45.390 1.00 0.64 \ ATOM 148 O LEU y 38 -8.443 -36.230 46.606 1.00 0.64 \ ATOM 149 CB LEU y 38 -7.548 -38.281 44.286 1.00 0.64 \ ATOM 150 CG LEU y 38 -7.959 -39.668 43.779 1.00 0.64 \ ATOM 151 CD1 LEU y 38 -6.753 -40.470 43.317 1.00 0.64 \ ATOM 152 CD2 LEU y 38 -8.699 -40.424 44.874 1.00 0.64 \ ATOM 153 N LEU y 39 -7.790 -35.085 44.791 1.00 0.64 \ ATOM 154 CA LEU y 39 -7.464 -33.886 45.557 1.00 0.64 \ ATOM 155 C LEU y 39 -8.708 -33.062 45.870 1.00 0.64 \ ATOM 156 O LEU y 39 -8.795 -32.449 46.934 1.00 0.64 \ ATOM 157 CB LEU y 39 -6.427 -33.028 44.837 1.00 0.64 \ ATOM 158 CG LEU y 39 -5.013 -33.602 44.859 1.00 0.64 \ ATOM 159 CD1 LEU y 39 -4.106 -32.784 43.956 1.00 0.64 \ ATOM 160 CD2 LEU y 39 -4.475 -33.672 46.283 1.00 0.64 \ ATOM 161 N ALA y 40 -9.668 -33.050 44.946 1.00 0.64 \ ATOM 162 CA ALA y 40 -10.915 -32.311 45.142 1.00 0.64 \ ATOM 163 C ALA y 40 -11.735 -32.891 46.286 1.00 0.64 \ ATOM 164 O ALA y 40 -12.385 -32.162 47.034 1.00 0.64 \ ATOM 165 CB ALA y 40 -11.732 -32.290 43.872 1.00 0.64 \ ATOM 166 N VAL y 41 -11.697 -34.209 46.415 1.00 -1.50 \ ATOM 167 CA VAL y 41 -12.394 -34.882 47.491 1.00 -1.50 \ ATOM 168 C VAL y 41 -11.730 -34.587 48.835 1.00 -1.50 \ ATOM 169 O VAL y 41 -12.395 -34.166 49.787 1.00 -1.50 \ ATOM 170 CB VAL y 41 -12.430 -36.400 47.262 1.00 -1.50 \ ATOM 171 CG1 VAL y 41 -12.864 -37.117 48.528 1.00 -1.50 \ ATOM 172 CG2 VAL y 41 -13.348 -36.738 46.103 1.00 -1.50 \ ATOM 173 N ARG y 42 -10.418 -34.795 48.913 1.00 0.64 \ ATOM 174 CA ARG y 42 -9.712 -34.607 50.176 1.00 0.64 \ ATOM 175 C ARG y 42 -9.201 -33.182 50.377 1.00 0.64 \ ATOM 176 O ARG y 42 -8.220 -32.971 51.091 1.00 0.64 \ ATOM 177 CB ARG y 42 -8.586 -35.633 50.338 1.00 0.64 \ ATOM 178 CG ARG y 42 -7.403 -35.463 49.426 1.00 0.64 \ ATOM 179 CD ARG y 42 -6.690 -36.797 49.264 1.00 0.64 \ ATOM 180 NE ARG y 42 -5.559 -36.953 50.175 1.00 0.64 \ ATOM 181 CZ ARG y 42 -4.977 -38.117 50.454 1.00 0.64 \ ATOM 182 NH1 ARG y 42 -3.946 -38.159 51.289 1.00 0.64 \ ATOM 183 NH2 ARG y 42 -5.428 -39.243 49.906 1.00 0.64 \ ATOM 184 N ARG y 43 -9.883 -32.220 49.748 1.00 -1.50 \ ATOM 185 CA ARG y 43 -9.615 -30.782 49.905 1.00 -1.50 \ ATOM 186 C ARG y 43 -8.127 -30.426 49.967 1.00 -1.50 \ ATOM 187 O ARG y 43 -7.673 -29.753 50.899 1.00 -1.50 \ ATOM 188 CB ARG y 43 -10.353 -30.223 51.130 1.00 -1.50 \ ATOM 189 CG ARG y 43 -11.870 -30.390 51.077 1.00 -1.50 \ ATOM 190 CD ARG y 43 -12.515 -30.013 52.403 1.00 -1.50 \ ATOM 191 NE ARG y 43 -13.926 -30.394 52.482 1.00 -1.50 \ ATOM 192 CZ ARG y 43 -14.663 -30.316 53.591 1.00 -1.50 \ ATOM 193 NH1 ARG y 43 -14.123 -29.874 54.721 1.00 -1.50 \ ATOM 194 NH2 ARG y 43 -15.939 -30.683 53.574 1.00 -1.50 \ ATOM 195 N GLY y 44 -7.378 -30.896 48.975 1.00 0.64 \ ATOM 196 CA GLY y 44 -5.948 -30.664 48.909 1.00 0.64 \ ATOM 197 C GLY y 44 -5.587 -29.357 48.225 1.00 0.64 \ ATOM 198 O GLY y 44 -6.454 -28.628 47.726 1.00 0.64 \ ATOM 199 N ASN y 45 -4.290 -29.070 48.193 1.00 -1.50 \ ATOM 200 CA ASN y 45 -3.770 -27.819 47.647 1.00 -1.50 \ ATOM 201 C ASN y 45 -3.968 -27.626 46.127 1.00 -1.50 \ ATOM 202 O ASN y 45 -3.008 -27.399 45.384 1.00 -1.50 \ ATOM 203 CB ASN y 45 -2.290 -27.680 48.021 1.00 -1.50 \ ATOM 204 CG ASN y 45 -2.041 -26.550 48.992 1.00 -1.50 \ ATOM 205 OD1 ASN y 45 -2.443 -25.409 48.749 1.00 -1.50 \ ATOM 206 ND2 ASN y 45 -1.386 -26.859 50.109 1.00 -1.50 \ ATOM 207 N LEU y 46 -5.216 -27.701 45.675 1.00 0.64 \ ATOM 208 CA LEU y 46 -5.543 -27.445 44.283 1.00 0.64 \ ATOM 209 C LEU y 46 -5.332 -25.977 43.906 1.00 0.64 \ ATOM 210 O LEU y 46 -5.208 -25.636 42.730 1.00 0.64 \ ATOM 211 CB LEU y 46 -6.987 -27.848 43.999 1.00 0.64 \ ATOM 212 CG LEU y 46 -7.224 -29.292 43.581 1.00 0.64 \ ATOM 213 CD1 LEU y 46 -8.669 -29.465 43.149 1.00 0.64 \ ATOM 214 CD2 LEU y 46 -6.267 -29.684 42.466 1.00 0.64 \ ATOM 215 OXT LEU y 46 -5.287 -25.087 44.753 1.00 0.64 \ """, "e5gtiy1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5gtiy1_csv", state=0, origin=1) cmd.zoom("e5gtiy1_csv", animate=-1)