cmd.read_pdbstr("""\ ATOM 1 N VAL Y 18 21.486 76.894 73.078 1.00 -1.50 \ ATOM 2 CA VAL Y 18 20.887 76.557 71.742 1.00 -1.50 \ ATOM 3 C VAL Y 18 20.697 77.813 70.880 1.00 -1.50 \ ATOM 4 O VAL Y 18 20.989 77.797 69.670 1.00 -1.50 \ ATOM 5 CB VAL Y 18 19.546 75.784 71.883 1.00 -1.50 \ ATOM 6 CG1 VAL Y 18 18.812 75.668 70.546 1.00 -1.50 \ ATOM 7 CG2 VAL Y 18 19.791 74.409 72.490 1.00 -1.50 \ ATOM 8 N ILE Y 19 20.191 78.878 71.515 1.00 0.64 \ ATOM 9 CA ILE Y 19 20.111 80.212 70.914 1.00 0.64 \ ATOM 10 C ILE Y 19 21.535 80.743 70.685 1.00 0.64 \ ATOM 11 O ILE Y 19 21.831 81.371 69.662 1.00 0.64 \ ATOM 12 CB ILE Y 19 19.237 81.169 71.782 1.00 0.64 \ ATOM 13 CG1 ILE Y 19 17.795 81.252 71.234 1.00 0.64 \ ATOM 14 CG2 ILE Y 19 19.829 82.575 71.863 1.00 0.64 \ ATOM 15 CD1 ILE Y 19 16.866 80.139 71.678 1.00 0.64 \ ATOM 16 N ALA Y 20 22.417 80.454 71.635 1.00 0.64 \ ATOM 17 CA ALA Y 20 23.821 80.798 71.492 1.00 0.64 \ ATOM 18 C ALA Y 20 24.434 80.050 70.309 1.00 0.64 \ ATOM 19 O ALA Y 20 25.161 80.652 69.509 1.00 0.64 \ ATOM 20 CB ALA Y 20 24.586 80.505 72.775 1.00 0.64 \ ATOM 21 N GLN Y 21 24.136 78.752 70.205 1.00 0.64 \ ATOM 22 CA GLN Y 21 24.655 77.928 69.098 1.00 0.64 \ ATOM 23 C GLN Y 21 24.200 78.430 67.719 1.00 0.64 \ ATOM 24 O GLN Y 21 25.024 78.556 66.808 1.00 0.64 \ ATOM 25 CB GLN Y 21 24.301 76.441 69.268 1.00 0.64 \ ATOM 26 CG GLN Y 21 25.076 75.690 70.354 1.00 0.64 \ ATOM 27 CD GLN Y 21 24.380 74.411 70.810 1.00 0.64 \ ATOM 28 OE1 GLN Y 21 23.174 74.238 70.608 1.00 0.64 \ ATOM 29 NE2 GLN Y 21 25.137 73.512 71.442 1.00 0.64 \ ATOM 30 N LEU Y 22 22.896 78.712 67.587 1.00 0.64 \ ATOM 31 CA LEU Y 22 22.289 79.168 66.326 1.00 0.64 \ ATOM 32 C LEU Y 22 22.776 80.555 65.874 1.00 0.64 \ ATOM 33 O LEU Y 22 22.926 80.824 64.671 1.00 0.64 \ ATOM 34 CB LEU Y 22 20.763 79.158 66.447 1.00 0.64 \ ATOM 35 CG LEU Y 22 20.113 77.772 66.412 1.00 0.64 \ ATOM 36 CD1 LEU Y 22 18.903 77.743 67.318 1.00 0.64 \ ATOM 37 CD2 LEU Y 22 19.746 77.383 64.993 1.00 0.64 \ ATOM 38 N THR Y 23 23.006 81.426 66.853 1.00 0.64 \ ATOM 39 CA THR Y 23 23.588 82.732 66.617 1.00 0.64 \ ATOM 40 C THR Y 23 25.052 82.588 66.150 1.00 0.64 \ ATOM 41 O THR Y 23 25.455 83.155 65.114 1.00 0.64 \ ATOM 42 CB THR Y 23 23.487 83.565 67.910 1.00 0.64 \ ATOM 43 OG1 THR Y 23 22.115 83.570 68.330 1.00 0.64 \ ATOM 44 CG2 THR Y 23 23.961 84.969 67.673 1.00 0.64 \ ATOM 45 N MET Y 24 25.835 81.807 66.891 1.00 0.64 \ ATOM 46 CA MET Y 24 27.221 81.563 66.500 1.00 0.64 \ ATOM 47 C MET Y 24 27.255 81.044 65.050 1.00 0.64 \ ATOM 48 O MET Y 24 27.969 81.595 64.203 1.00 0.64 \ ATOM 49 CB MET Y 24 27.919 80.571 67.444 1.00 0.64 \ ATOM 50 CG MET Y 24 28.038 80.979 68.914 1.00 0.64 \ ATOM 51 SD MET Y 24 28.348 82.735 69.187 1.00 0.64 \ ATOM 52 CE MET Y 24 30.039 82.960 68.632 1.00 0.64 \ ATOM 53 N ILE Y 25 26.460 80.016 64.751 1.00 -1.50 \ ATOM 54 CA ILE Y 25 26.500 79.436 63.410 1.00 -1.50 \ ATOM 55 C ILE Y 25 25.941 80.407 62.360 1.00 -1.50 \ ATOM 56 O ILE Y 25 26.310 80.311 61.186 1.00 -1.50 \ ATOM 57 CB ILE Y 25 25.887 77.991 63.324 1.00 -1.50 \ ATOM 58 CG1 ILE Y 25 26.563 77.177 62.195 1.00 -1.50 \ ATOM 59 CG2 ILE Y 25 24.358 78.011 63.256 1.00 -1.50 \ ATOM 60 CD1 ILE Y 25 25.897 77.238 60.827 1.00 -1.50 \ ATOM 61 N ALA Y 26 25.064 81.331 62.779 1.00 0.64 \ ATOM 62 CA ALA Y 26 24.582 82.374 61.871 1.00 0.64 \ ATOM 63 C ALA Y 26 25.702 83.368 61.509 1.00 0.64 \ ATOM 64 O ALA Y 26 25.891 83.667 60.339 1.00 0.64 \ ATOM 65 CB ALA Y 26 23.358 83.079 62.424 1.00 0.64 \ ATOM 66 N MET Y 27 26.454 83.843 62.497 1.00 -1.50 \ ATOM 67 CA MET Y 27 27.578 84.778 62.255 1.00 -1.50 \ ATOM 68 C MET Y 27 28.731 84.184 61.439 1.00 -1.50 \ ATOM 69 O MET Y 27 29.271 84.843 60.522 1.00 -1.50 \ ATOM 70 CB MET Y 27 28.105 85.325 63.571 1.00 -1.50 \ ATOM 71 CG MET Y 27 27.178 86.372 64.181 1.00 -1.50 \ ATOM 72 SD MET Y 27 27.491 86.573 65.942 1.00 -1.50 \ ATOM 73 CE MET Y 27 26.195 87.724 66.411 1.00 -1.50 \ ATOM 74 N ILE Y 28 29.103 82.945 61.778 1.00 0.64 \ ATOM 75 CA ILE Y 28 30.096 82.185 61.011 1.00 0.64 \ ATOM 76 C ILE Y 28 29.551 81.896 59.599 1.00 0.64 \ ATOM 77 O ILE Y 28 30.242 82.103 58.620 1.00 0.64 \ ATOM 78 CB ILE Y 28 30.498 80.877 61.730 1.00 0.64 \ ATOM 79 CG1 ILE Y 28 31.064 81.168 63.132 1.00 0.64 \ ATOM 80 CG2 ILE Y 28 31.478 80.066 60.883 1.00 0.64 \ ATOM 81 CD1 ILE Y 28 30.817 80.032 64.110 1.00 0.64 \ ATOM 82 N GLY Y 29 28.296 81.467 59.502 1.00 -1.50 \ ATOM 83 CA GLY Y 29 27.662 81.181 58.200 1.00 -1.50 \ ATOM 84 C GLY Y 29 27.687 82.367 57.243 1.00 -1.50 \ ATOM 85 O GLY Y 29 27.876 82.204 56.045 1.00 -1.50 \ ATOM 86 N ILE Y 30 27.520 83.568 57.781 1.00 0.64 \ ATOM 87 CA ILE Y 30 27.380 84.781 56.973 1.00 0.64 \ ATOM 88 C ILE Y 30 28.766 85.311 56.601 1.00 0.64 \ ATOM 89 O ILE Y 30 28.932 85.894 55.539 1.00 0.64 \ ATOM 90 CB ILE Y 30 26.506 85.847 57.711 1.00 0.64 \ ATOM 91 CG1 ILE Y 30 25.006 85.538 57.554 1.00 0.64 \ ATOM 92 CG2 ILE Y 30 26.795 87.259 57.231 1.00 0.64 \ ATOM 93 CD1 ILE Y 30 24.319 86.225 56.376 1.00 0.64 \ ATOM 94 N ALA Y 31 29.769 85.062 57.438 1.00 0.64 \ ATOM 95 CA ALA Y 31 31.128 85.545 57.140 1.00 0.64 \ ATOM 96 C ALA Y 31 31.593 85.241 55.717 1.00 0.64 \ ATOM 97 O ALA Y 31 32.142 86.120 55.055 1.00 0.64 \ ATOM 98 CB ALA Y 31 32.146 85.037 58.154 1.00 0.64 \ ATOM 99 N GLY Y 32 31.373 84.017 55.242 1.00 0.64 \ ATOM 100 CA GLY Y 32 31.706 83.657 53.848 1.00 0.64 \ ATOM 101 C GLY Y 32 31.092 84.535 52.766 1.00 0.64 \ ATOM 102 O GLY Y 32 31.820 85.233 52.052 1.00 0.64 \ ATOM 103 N PRO Y 33 29.743 84.487 52.616 1.00 0.64 \ ATOM 104 CA PRO Y 33 29.082 85.283 51.579 1.00 0.64 \ ATOM 105 C PRO Y 33 29.327 86.775 51.773 1.00 0.64 \ ATOM 106 O PRO Y 33 29.538 87.495 50.793 1.00 0.64 \ ATOM 107 CB PRO Y 33 27.575 84.947 51.751 1.00 0.64 \ ATOM 108 CG PRO Y 33 27.542 83.655 52.528 1.00 0.64 \ ATOM 109 CD PRO Y 33 28.782 83.669 53.390 1.00 0.64 \ ATOM 110 N MET Y 34 29.314 87.231 53.025 1.00 -1.50 \ ATOM 111 CA MET Y 34 29.629 88.627 53.328 1.00 -1.50 \ ATOM 112 C MET Y 34 30.893 89.078 52.621 1.00 -1.50 \ ATOM 113 O MET Y 34 30.884 90.097 51.925 1.00 -1.50 \ ATOM 114 CB MET Y 34 29.782 88.855 54.842 1.00 -1.50 \ ATOM 115 CG MET Y 34 29.864 90.324 55.266 1.00 -1.50 \ ATOM 116 SD MET Y 34 28.705 91.410 54.379 1.00 -1.50 \ ATOM 117 CE MET Y 34 27.118 90.554 54.483 1.00 -1.50 \ ATOM 118 N ILE Y 35 31.979 88.329 52.803 1.00 -1.50 \ ATOM 119 CA ILE Y 35 33.232 88.645 52.114 1.00 -1.50 \ ATOM 120 C ILE Y 35 32.977 88.816 50.602 1.00 -1.50 \ ATOM 121 O ILE Y 35 33.402 89.802 49.991 1.00 -1.50 \ ATOM 122 CB ILE Y 35 34.308 87.563 52.355 1.00 -1.50 \ ATOM 123 CG1 ILE Y 35 34.802 87.574 53.803 1.00 -1.50 \ ATOM 124 CG2 ILE Y 35 35.460 87.688 51.361 1.00 -1.50 \ ATOM 125 CD1 ILE Y 35 35.430 86.251 54.230 1.00 -1.50 \ ATOM 126 N ILE Y 36 32.246 87.879 50.006 1.00 0.64 \ ATOM 127 CA ILE Y 36 32.084 87.881 48.549 1.00 0.64 \ ATOM 128 C ILE Y 36 31.370 89.156 48.149 1.00 0.64 \ ATOM 129 O ILE Y 36 31.787 89.830 47.197 1.00 0.64 \ ATOM 130 CB ILE Y 36 31.303 86.635 48.010 1.00 0.64 \ ATOM 131 CG1 ILE Y 36 32.040 85.330 48.331 1.00 0.64 \ ATOM 132 CG2 ILE Y 36 30.977 86.777 46.516 1.00 0.64 \ ATOM 133 CD1 ILE Y 36 33.569 85.372 48.305 1.00 0.64 \ ATOM 134 N PHE Y 37 30.309 89.460 48.908 1.00 0.64 \ ATOM 135 CA PHE Y 37 29.471 90.631 48.729 1.00 0.64 \ ATOM 136 C PHE Y 37 30.290 91.909 48.898 1.00 0.64 \ ATOM 137 O PHE Y 37 30.329 92.753 48.005 1.00 0.64 \ ATOM 138 CB PHE Y 37 28.343 90.581 49.745 1.00 0.64 \ ATOM 139 CG PHE Y 37 27.397 91.731 49.666 1.00 0.64 \ ATOM 140 CD1 PHE Y 37 27.519 92.812 50.546 1.00 0.64 \ ATOM 141 CD2 PHE Y 37 26.354 91.726 48.741 1.00 0.64 \ ATOM 142 CE1 PHE Y 37 26.624 93.877 50.488 1.00 0.64 \ ATOM 143 CE2 PHE Y 37 25.457 92.787 48.672 1.00 0.64 \ ATOM 144 CZ PHE Y 37 25.590 93.863 49.553 1.00 0.64 \ ATOM 145 N LEU Y 38 30.964 92.042 50.033 1.00 0.64 \ ATOM 146 CA LEU Y 38 31.931 93.130 50.217 1.00 0.64 \ ATOM 147 C LEU Y 38 32.893 93.319 49.029 1.00 0.64 \ ATOM 148 O LEU Y 38 33.190 94.444 48.647 1.00 0.64 \ ATOM 149 CB LEU Y 38 32.721 92.944 51.496 1.00 0.64 \ ATOM 150 CG LEU Y 38 32.034 93.208 52.831 1.00 0.64 \ ATOM 151 CD1 LEU Y 38 33.065 93.149 53.951 1.00 0.64 \ ATOM 152 CD2 LEU Y 38 31.352 94.570 52.801 1.00 0.64 \ ATOM 153 N LEU Y 39 33.368 92.235 48.429 1.00 0.64 \ ATOM 154 CA LEU Y 39 34.240 92.384 47.260 1.00 0.64 \ ATOM 155 C LEU Y 39 33.491 92.750 45.970 1.00 0.64 \ ATOM 156 O LEU Y 39 33.986 93.539 45.171 1.00 0.64 \ ATOM 157 CB LEU Y 39 35.137 91.171 47.071 1.00 0.64 \ ATOM 158 CG LEU Y 39 36.357 91.091 47.978 1.00 0.64 \ ATOM 159 CD1 LEU Y 39 36.963 89.704 47.854 1.00 0.64 \ ATOM 160 CD2 LEU Y 39 37.395 92.157 47.661 1.00 0.64 \ ATOM 161 N ALA Y 40 32.303 92.173 45.776 1.00 0.64 \ ATOM 162 CA ALA Y 40 31.418 92.487 44.643 1.00 0.64 \ ATOM 163 C ALA Y 40 30.951 93.950 44.605 1.00 0.64 \ ATOM 164 O ALA Y 40 30.961 94.585 43.531 1.00 0.64 \ ATOM 165 CB ALA Y 40 30.208 91.561 44.650 1.00 0.64 \ ATOM 166 N VAL Y 41 30.518 94.466 45.759 1.00 -1.50 \ ATOM 167 CA VAL Y 41 30.105 95.866 45.883 1.00 -1.50 \ ATOM 168 C VAL Y 41 31.309 96.754 45.565 1.00 -1.50 \ ATOM 169 O VAL Y 41 31.181 97.744 44.851 1.00 -1.50 \ ATOM 170 CB VAL Y 41 29.517 96.204 47.281 1.00 -1.50 \ ATOM 171 CG1 VAL Y 41 29.158 97.686 47.383 1.00 -1.50 \ ATOM 172 CG2 VAL Y 41 28.265 95.376 47.554 1.00 -1.50 \ ATOM 173 N ARG Y 42 32.483 96.365 46.047 1.00 0.64 \ ATOM 174 CA ARG Y 42 33.710 97.141 45.830 1.00 0.64 \ ATOM 175 C ARG Y 42 34.406 96.908 44.489 1.00 0.64 \ ATOM 176 O ARG Y 42 35.492 97.436 44.249 1.00 0.64 \ ATOM 177 CB ARG Y 42 34.684 96.926 46.996 1.00 0.64 \ ATOM 178 CG ARG Y 42 34.233 97.696 48.221 1.00 0.64 \ ATOM 179 CD ARG Y 42 34.885 97.266 49.513 1.00 0.64 \ ATOM 180 NE ARG Y 42 34.066 97.773 50.616 1.00 0.64 \ ATOM 181 CZ ARG Y 42 34.483 97.938 51.870 1.00 0.64 \ ATOM 182 NH1 ARG Y 42 35.735 97.635 52.205 1.00 0.64 \ ATOM 183 NH2 ARG Y 42 33.643 98.414 52.790 1.00 0.64 \ ATOM 184 N ARG Y 43 33.775 96.128 43.618 1.00 -1.50 \ ATOM 185 CA ARG Y 43 34.392 95.662 42.364 1.00 -1.50 \ ATOM 186 C ARG Y 43 35.813 95.087 42.598 1.00 -1.50 \ ATOM 187 O ARG Y 43 36.746 95.353 41.841 1.00 -1.50 \ ATOM 188 CB ARG Y 43 34.346 96.746 41.251 1.00 -1.50 \ ATOM 189 CG ARG Y 43 33.264 97.813 41.439 1.00 -1.50 \ ATOM 190 CD ARG Y 43 32.249 97.925 40.300 1.00 -1.50 \ ATOM 191 NE ARG Y 43 31.066 97.073 40.518 1.00 -1.50 \ ATOM 192 CZ ARG Y 43 30.029 97.361 41.316 1.00 -1.50 \ ATOM 193 NH1 ARG Y 43 29.994 98.497 42.008 1.00 -1.50 \ ATOM 194 NH2 ARG Y 43 29.016 96.501 41.428 1.00 -1.50 \ ATOM 195 N GLY Y 44 35.961 94.294 43.661 1.00 0.64 \ ATOM 196 CA GLY Y 44 37.249 93.687 44.022 1.00 0.64 \ ATOM 197 C GLY Y 44 37.748 92.620 43.059 1.00 0.64 \ ATOM 198 O GLY Y 44 37.072 92.262 42.108 1.00 0.64 \ ATOM 199 N ASN Y 45 38.951 92.132 43.316 1.00 -1.50 \ ATOM 200 CA ASN Y 45 39.608 91.081 42.528 1.00 -1.50 \ ATOM 201 C ASN Y 45 39.075 89.624 42.769 1.00 -1.50 \ ATOM 202 O ASN Y 45 39.830 88.720 43.127 1.00 -1.50 \ ATOM 203 CB ASN Y 45 41.123 91.183 42.823 1.00 -1.50 \ ATOM 204 CG ASN Y 45 41.981 90.442 41.818 1.00 -1.50 \ ATOM 205 OD1 ASN Y 45 41.579 90.210 40.661 1.00 -1.50 \ ATOM 206 ND2 ASN Y 45 43.179 90.060 42.254 1.00 -1.50 \ ATOM 207 N LEU Y 46 37.770 89.415 42.569 1.00 0.64 \ ATOM 208 CA LEU Y 46 37.125 88.095 42.665 1.00 0.64 \ ATOM 209 C LEU Y 46 37.520 87.148 41.494 1.00 0.64 \ ATOM 210 O LEU Y 46 37.476 85.914 41.559 1.00 0.64 \ ATOM 211 CB LEU Y 46 35.594 88.277 42.649 1.00 0.64 \ ATOM 212 CG LEU Y 46 34.777 88.756 43.858 1.00 0.64 \ ATOM 213 CD1 LEU Y 46 33.332 89.012 43.408 1.00 0.64 \ ATOM 214 CD2 LEU Y 46 34.805 87.785 45.038 1.00 0.64 \ ATOM 215 OXT LEU Y 46 37.863 87.583 40.385 1.00 0.64 \ """, "e5h2fY1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5h2fY1_csv", state=0, origin=1) cmd.zoom("e5h2fY1_csv", animate=-1)