cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 83.546 6.531 -18.165 1.00 -1.00 \ ATOM 2 CA PHE D 1 83.525 7.795 -17.347 1.00 -1.00 \ ATOM 3 C PHE D 1 82.740 7.613 -16.032 1.00 -1.00 \ ATOM 4 O PHE D 1 83.323 7.693 -14.935 1.00 -1.00 \ ATOM 5 CB PHE D 1 82.939 8.966 -18.163 1.00 -1.00 \ ATOM 6 N VAL D 2 81.425 7.385 -16.149 1.00 -1.00 \ ATOM 7 CA VAL D 2 80.591 6.998 -14.986 1.00 -1.00 \ ATOM 8 C VAL D 2 80.807 5.496 -14.631 1.00 -1.00 \ ATOM 9 O VAL D 2 81.311 5.208 -13.560 1.00 -1.00 \ ATOM 10 CB VAL D 2 79.100 7.380 -15.151 1.00 -1.00 \ ATOM 11 CG1 VAL D 2 78.399 7.219 -13.826 1.00 -1.00 \ ATOM 12 CG2 VAL D 2 78.974 8.821 -15.619 1.00 -1.00 \ ATOM 13 N ASN D 3 80.449 4.567 -15.527 1.00 -0.47 \ ATOM 14 CA ASN D 3 81.008 3.197 -15.550 1.00 -0.47 \ ATOM 15 C ASN D 3 82.250 3.108 -14.612 1.00 -0.47 \ ATOM 16 O ASN D 3 82.273 2.314 -13.700 1.00 -0.47 \ ATOM 17 CB ASN D 3 81.401 2.812 -17.016 1.00 -0.47 \ ATOM 18 CG ASN D 3 80.778 1.488 -17.518 1.00 -0.47 \ ATOM 19 OD1 ASN D 3 79.599 1.192 -17.269 1.00 -0.47 \ ATOM 20 ND2 ASN D 3 81.564 0.720 -18.302 1.00 -0.47 \ ATOM 21 N GLN D 4 83.254 3.960 -14.794 1.00 0.23 \ ATOM 22 CA GLN D 4 84.509 3.837 -14.034 1.00 0.23 \ ATOM 23 C GLN D 4 84.500 4.564 -12.698 1.00 0.23 \ ATOM 24 O GLN D 4 85.185 4.180 -11.753 1.00 0.23 \ ATOM 25 CB GLN D 4 85.685 4.357 -14.871 1.00 0.23 \ ATOM 26 CG GLN D 4 85.500 4.098 -16.362 1.00 0.23 \ ATOM 27 CD GLN D 4 86.796 3.827 -17.104 1.00 0.23 \ ATOM 28 OE1 GLN D 4 87.754 4.646 -17.080 1.00 0.23 \ ATOM 29 NE2 GLN D 4 86.831 2.674 -17.798 1.00 0.23 \ ATOM 30 N HIS D 5 83.770 5.655 -12.604 1.00 -0.04 \ ATOM 31 CA HIS D 5 83.572 6.231 -11.311 1.00 -0.04 \ ATOM 32 C HIS D 5 82.941 5.177 -10.322 1.00 -0.04 \ ATOM 33 O HIS D 5 83.415 4.987 -9.203 1.00 -0.04 \ ATOM 34 CB HIS D 5 82.636 7.429 -11.405 1.00 -0.04 \ ATOM 35 CG HIS D 5 82.597 8.215 -10.149 1.00 -0.04 \ ATOM 36 ND1 HIS D 5 81.444 8.398 -9.420 1.00 -0.04 \ ATOM 37 CD2 HIS D 5 83.599 8.776 -9.427 1.00 -0.04 \ ATOM 38 CE1 HIS D 5 81.722 9.082 -8.322 1.00 -0.04 \ ATOM 39 NE2 HIS D 5 83.025 9.325 -8.303 1.00 -0.04 \ ATOM 40 N LEU D 6 81.910 4.496 -10.780 1.00 1.14 \ ATOM 41 CA LEU D 6 81.126 3.554 -9.968 1.00 1.14 \ ATOM 42 C LEU D 6 81.923 2.314 -9.684 1.00 1.14 \ ATOM 43 O LEU D 6 81.805 1.750 -8.625 1.00 1.14 \ ATOM 44 CB LEU D 6 79.862 3.125 -10.692 1.00 1.14 \ ATOM 45 CG LEU D 6 78.800 4.211 -11.020 1.00 1.14 \ ATOM 46 CD1 LEU D 6 77.633 3.561 -11.754 1.00 1.14 \ ATOM 47 CD2 LEU D 6 78.256 5.076 -9.886 1.00 1.14 \ ATOM 48 N CYS D 7 82.723 1.884 -10.637 1.00 1.71 \ ATOM 49 CA CYS D 7 83.607 0.756 -10.430 1.00 1.71 \ ATOM 50 C CYS D 7 84.692 1.107 -9.391 1.00 1.71 \ ATOM 51 O CYS D 7 85.037 0.306 -8.546 1.00 1.71 \ ATOM 52 CB CYS D 7 84.242 0.379 -11.770 1.00 1.71 \ ATOM 53 SG CYS D 7 85.564 -0.847 -11.707 1.00 1.71 \ ATOM 54 N GLY D 8 85.191 2.329 -9.440 1.00 0.69 \ ATOM 55 CA GLY D 8 86.178 2.813 -8.473 1.00 0.69 \ ATOM 56 C GLY D 8 85.697 2.713 -7.053 1.00 0.69 \ ATOM 57 O GLY D 8 86.478 2.436 -6.111 1.00 0.69 \ ATOM 58 N SER D 9 84.409 2.968 -6.868 1.00 -0.48 \ ATOM 59 CA SER D 9 83.795 2.891 -5.556 1.00 -0.48 \ ATOM 60 C SER D 9 83.791 1.457 -4.992 1.00 -0.48 \ ATOM 61 O SER D 9 84.064 1.232 -3.818 1.00 -0.48 \ ATOM 62 CB SER D 9 82.380 3.415 -5.594 1.00 -0.48 \ ATOM 63 OG SER D 9 81.782 3.072 -4.397 1.00 -0.48 \ ATOM 64 N HIS D 10 83.455 0.499 -5.829 1.00 -0.23 \ ATOM 65 CA HIS D 10 83.633 -0.889 -5.479 1.00 -0.23 \ ATOM 66 C HIS D 10 85.045 -1.329 -5.296 1.00 -0.23 \ ATOM 67 O HIS D 10 85.291 -2.119 -4.469 1.00 -0.23 \ ATOM 68 CB HIS D 10 82.989 -1.707 -6.554 1.00 -0.23 \ ATOM 69 CG HIS D 10 81.503 -1.533 -6.567 1.00 -0.23 \ ATOM 70 ND1 HIS D 10 80.670 -2.278 -5.781 1.00 -0.23 \ ATOM 71 CD2 HIS D 10 80.723 -0.638 -7.194 1.00 -0.23 \ ATOM 72 CE1 HIS D 10 79.428 -1.902 -5.968 1.00 -0.23 \ ATOM 73 NE2 HIS D 10 79.439 -0.899 -6.816 1.00 -0.23 \ ATOM 74 N LEU D 11 85.980 -0.776 -6.039 1.00 1.71 \ ATOM 75 CA LEU D 11 87.379 -1.101 -5.931 1.00 1.71 \ ATOM 76 C LEU D 11 87.976 -0.667 -4.595 1.00 1.71 \ ATOM 77 O LEU D 11 88.739 -1.427 -3.967 1.00 1.71 \ ATOM 78 CB LEU D 11 88.129 -0.381 -7.029 1.00 1.71 \ ATOM 79 CG LEU D 11 88.278 -0.912 -8.451 1.00 1.71 \ ATOM 80 CD1 LEU D 11 89.174 0.128 -9.155 1.00 1.71 \ ATOM 81 CD2 LEU D 11 88.931 -2.303 -8.461 1.00 1.71 \ ATOM 82 N VAL D 12 87.647 0.549 -4.158 1.00 0.69 \ ATOM 83 CA VAL D 12 88.132 1.009 -2.853 1.00 0.69 \ ATOM 84 C VAL D 12 87.616 0.161 -1.733 1.00 0.69 \ ATOM 85 O VAL D 12 88.369 -0.198 -0.782 1.00 0.69 \ ATOM 86 CB VAL D 12 87.912 2.512 -2.573 1.00 0.69 \ ATOM 87 CG1 VAL D 12 88.596 3.311 -3.669 1.00 0.69 \ ATOM 88 CG2 VAL D 12 86.485 2.919 -2.507 1.00 0.69 \ ATOM 89 N GLU D 13 86.334 -0.173 -1.858 1.00 0.66 \ ATOM 90 CA GLU D 13 85.663 -1.122 -1.011 1.00 0.66 \ ATOM 91 C GLU D 13 86.411 -2.454 -0.923 1.00 0.66 \ ATOM 92 O GLU D 13 86.605 -2.999 0.130 1.00 0.66 \ ATOM 93 CB GLU D 13 84.289 -1.376 -1.637 1.00 0.66 \ ATOM 94 CG GLU D 13 83.108 -1.587 -0.715 1.00 0.66 \ ATOM 95 CD GLU D 13 81.766 -1.517 -1.506 1.00 0.66 \ ATOM 96 OE1 GLU D 13 81.124 -0.407 -1.539 1.00 0.66 \ ATOM 97 OE2 GLU D 13 81.395 -2.565 -2.145 1.00 0.66 \ ATOM 98 N ALA D 14 86.779 -3.008 -2.053 1.00 -0.03 \ ATOM 99 CA ALA D 14 87.459 -4.262 -2.078 1.00 -0.03 \ ATOM 100 C ALA D 14 88.891 -4.149 -1.595 1.00 -0.03 \ ATOM 101 O ALA D 14 89.409 -5.059 -1.001 1.00 -0.03 \ ATOM 102 CB ALA D 14 87.432 -4.821 -3.504 1.00 -0.03 \ ATOM 103 N LEU D 15 89.573 -3.095 -1.978 1.00 1.71 \ ATOM 104 CA LEU D 15 90.934 -2.850 -1.457 1.00 1.71 \ ATOM 105 C LEU D 15 90.890 -2.689 0.068 1.00 1.71 \ ATOM 106 O LEU D 15 91.793 -3.186 0.792 1.00 1.71 \ ATOM 107 CB LEU D 15 91.535 -1.590 -2.067 1.00 1.71 \ ATOM 108 CG LEU D 15 91.961 -1.629 -3.508 1.00 1.71 \ ATOM 109 CD1 LEU D 15 92.579 -0.297 -3.895 1.00 1.71 \ ATOM 110 CD2 LEU D 15 92.992 -2.692 -3.720 1.00 1.71 \ ATOM 111 N TYR D 16 89.849 -2.018 0.578 1.00 -0.22 \ ATOM 112 CA TYR D 16 89.696 -1.922 2.025 1.00 -0.22 \ ATOM 113 C TYR D 16 89.729 -3.312 2.705 1.00 -0.22 \ ATOM 114 O TYR D 16 90.436 -3.537 3.693 1.00 -0.22 \ ATOM 115 CB TYR D 16 88.472 -1.097 2.409 1.00 -0.22 \ ATOM 116 CG TYR D 16 88.221 -1.005 3.889 1.00 -0.22 \ ATOM 117 CD1 TYR D 16 89.011 -0.224 4.699 1.00 -0.22 \ ATOM 118 CD2 TYR D 16 87.220 -1.741 4.490 1.00 -0.22 \ ATOM 119 CE1 TYR D 16 88.810 -0.172 6.059 1.00 -0.22 \ ATOM 120 CE2 TYR D 16 87.020 -1.670 5.834 1.00 -0.22 \ ATOM 121 CZ TYR D 16 87.821 -0.858 6.614 1.00 -0.22 \ ATOM 122 OH TYR D 16 87.585 -0.750 7.982 1.00 -0.22 \ ATOM 123 N LEU D 17 89.005 -4.236 2.149 1.00 -0.23 \ ATOM 124 CA LEU D 17 88.817 -5.495 2.796 1.00 -0.23 \ ATOM 125 C LEU D 17 90.088 -6.365 2.631 1.00 -0.23 \ ATOM 126 O LEU D 17 90.498 -7.074 3.540 1.00 -0.23 \ ATOM 127 CB LEU D 17 87.581 -6.117 2.180 1.00 -0.23 \ ATOM 128 CG LEU D 17 87.413 -7.611 2.363 1.00 -0.23 \ ATOM 129 CD1 LEU D 17 86.934 -7.887 3.777 1.00 -0.23 \ ATOM 130 CD2 LEU D 17 86.500 -8.229 1.284 1.00 -0.23 \ ATOM 131 N VAL D 18 90.690 -6.276 1.459 1.00 0.24 \ ATOM 132 CA VAL D 18 91.796 -7.086 1.077 1.00 0.24 \ ATOM 133 C VAL D 18 93.080 -6.607 1.728 1.00 0.24 \ ATOM 134 O VAL D 18 93.822 -7.382 2.295 1.00 0.24 \ ATOM 135 CB VAL D 18 91.975 -7.079 -0.445 1.00 0.24 \ ATOM 136 CG1 VAL D 18 93.168 -7.919 -0.834 1.00 0.24 \ ATOM 137 CG2 VAL D 18 90.745 -7.695 -1.070 1.00 0.24 \ ATOM 138 N CYS D 19 93.331 -5.329 1.669 1.00 1.71 \ ATOM 139 CA CYS D 19 94.586 -4.846 2.199 1.00 1.71 \ ATOM 140 C CYS D 19 94.779 -4.980 3.687 1.00 1.71 \ ATOM 141 O CYS D 19 95.904 -5.138 4.132 1.00 1.71 \ ATOM 142 CB CYS D 19 94.798 -3.432 1.756 1.00 1.71 \ ATOM 143 SG CYS D 19 94.793 -3.472 -0.046 1.00 1.71 \ ATOM 144 N GLY D 20 93.711 -4.961 4.461 1.00 -0.18 \ ATOM 145 CA GLY D 20 93.850 -5.127 5.907 1.00 -0.18 \ ATOM 146 C GLY D 20 94.697 -4.018 6.501 1.00 -0.18 \ ATOM 147 O GLY D 20 94.462 -2.845 6.199 1.00 -0.18 \ ATOM 148 N GLU D 21 95.704 -4.390 7.305 1.00 0.19 \ ATOM 149 CA GLU D 21 96.558 -3.419 8.020 1.00 0.19 \ ATOM 150 C GLU D 21 97.579 -2.733 7.131 1.00 0.19 \ ATOM 151 O GLU D 21 98.170 -1.728 7.519 1.00 0.19 \ ATOM 152 CB GLU D 21 97.285 -4.081 9.171 1.00 0.19 \ ATOM 153 CG GLU D 21 96.361 -4.710 10.198 1.00 0.19 \ ATOM 154 CD GLU D 21 96.022 -3.781 11.351 1.00 0.19 \ ATOM 155 OE1 GLU D 21 95.710 -2.589 11.105 1.00 0.19 \ ATOM 156 OE2 GLU D 21 96.065 -4.260 12.511 1.00 0.19 \ ATOM 157 N ARG D 22 97.791 -3.277 5.942 1.00 -0.63 \ ATOM 158 CA ARG D 22 98.564 -2.608 4.902 1.00 -0.63 \ ATOM 159 C ARG D 22 97.996 -1.221 4.558 1.00 -0.63 \ ATOM 160 O ARG D 22 98.735 -0.215 4.501 1.00 -0.63 \ ATOM 161 CB ARG D 22 98.594 -3.488 3.633 1.00 -0.63 \ ATOM 162 CG ARG D 22 99.542 -4.692 3.741 1.00 -0.63 \ ATOM 163 CD ARG D 22 99.316 -5.770 2.685 1.00 -0.63 \ ATOM 164 NE ARG D 22 98.121 -6.565 2.962 1.00 -0.63 \ ATOM 165 CZ ARG D 22 97.772 -7.659 2.290 1.00 -0.63 \ ATOM 166 NH1 ARG D 22 98.549 -8.103 1.300 1.00 -0.63 \ ATOM 167 NH2 ARG D 22 96.648 -8.316 2.611 1.00 -0.63 \ ATOM 168 N GLY D 23 96.685 -1.170 4.346 1.00 1.71 \ ATOM 169 CA GLY D 23 96.111 -0.024 3.768 1.00 1.71 \ ATOM 170 C GLY D 23 96.524 0.122 2.307 1.00 1.71 \ ATOM 171 O GLY D 23 97.070 -0.787 1.673 1.00 1.71 \ ATOM 172 N PHE D 24 96.252 1.298 1.760 1.00 1.12 \ ATOM 173 CA PHE D 24 96.353 1.502 0.314 1.00 1.12 \ ATOM 174 C PHE D 24 96.271 2.969 -0.047 1.00 1.12 \ ATOM 175 O PHE D 24 95.751 3.771 0.735 1.00 1.12 \ ATOM 176 CB PHE D 24 95.255 0.689 -0.443 1.00 1.12 \ ATOM 177 CG PHE D 24 93.832 1.053 -0.075 1.00 1.12 \ ATOM 178 CD1 PHE D 24 93.237 0.517 1.047 1.00 1.12 \ ATOM 179 CD2 PHE D 24 93.111 1.940 -0.851 1.00 1.12 \ ATOM 180 CE1 PHE D 24 91.936 0.846 1.375 1.00 1.12 \ ATOM 181 CE2 PHE D 24 91.814 2.299 -0.515 1.00 1.12 \ ATOM 182 CZ PHE D 24 91.226 1.721 0.588 1.00 1.12 \ ATOM 183 N PHE D 25 96.810 3.298 -1.216 1.00 0.52 \ ATOM 184 CA PHE D 25 96.526 4.558 -1.874 1.00 0.52 \ ATOM 185 C PHE D 25 95.504 4.246 -2.976 1.00 0.52 \ ATOM 186 O PHE D 25 95.536 3.187 -3.627 1.00 0.52 \ ATOM 187 CB PHE D 25 97.793 5.224 -2.518 1.00 0.52 \ ATOM 188 CG PHE D 25 98.618 6.063 -1.562 1.00 0.52 \ ATOM 189 CD1 PHE D 25 99.060 5.545 -0.343 1.00 0.52 \ ATOM 190 CD2 PHE D 25 98.974 7.371 -1.896 1.00 0.52 \ ATOM 191 CE1 PHE D 25 99.812 6.315 0.534 1.00 0.52 \ ATOM 192 CE2 PHE D 25 99.720 8.142 -1.021 1.00 0.52 \ ATOM 193 CZ PHE D 25 100.141 7.603 0.195 1.00 0.52 \ ATOM 194 N TYR D 26 94.636 5.208 -3.234 1.00 -0.25 \ ATOM 195 CA TYR D 26 93.830 5.148 -4.428 1.00 -0.25 \ ATOM 196 C TYR D 26 93.902 6.520 -5.100 1.00 -0.25 \ ATOM 197 O TYR D 26 93.756 7.534 -4.426 1.00 -0.25 \ ATOM 198 CB TYR D 26 92.360 4.740 -4.104 1.00 -0.25 \ ATOM 199 CG TYR D 26 91.582 4.498 -5.374 1.00 -0.25 \ ATOM 200 CD1 TYR D 26 91.539 3.205 -5.985 1.00 -0.25 \ ATOM 201 CD2 TYR D 26 90.892 5.540 -6.005 1.00 -0.25 \ ATOM 202 CE1 TYR D 26 90.852 2.983 -7.197 1.00 -0.25 \ ATOM 203 CE2 TYR D 26 90.200 5.332 -7.199 1.00 -0.25 \ ATOM 204 CZ TYR D 26 90.172 4.061 -7.784 1.00 -0.25 \ ATOM 205 OH TYR D 26 89.456 3.884 -8.954 1.00 -0.25 \ ATOM 206 N THR D 27 94.101 6.535 -6.418 1.00 -0.98 \ ATOM 207 CA THR D 27 93.950 7.760 -7.218 1.00 -0.98 \ ATOM 208 C THR D 27 93.178 7.439 -8.512 1.00 -0.98 \ ATOM 209 O THR D 27 93.329 6.350 -9.070 1.00 -0.98 \ ATOM 210 CB THR D 27 95.333 8.353 -7.543 1.00 -0.98 \ ATOM 211 OG1 THR D 27 96.091 8.485 -6.322 1.00 -0.98 \ ATOM 212 CG2 THR D 27 95.184 9.726 -8.258 1.00 -0.98 \ """, "e5hpuD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5hpuD1_csv", state=0, origin=1) cmd.zoom("e5hpuD1_csv", animate=-1)