cmd.read_pdbstr("""\ ATOM 1 N MET q 1 226.717 1.498 235.990 1.00 -1.00 \ ATOM 2 CA MET q 1 226.353 0.845 234.733 1.00 -1.00 \ ATOM 3 C MET q 1 227.140 1.393 233.544 1.00 -1.00 \ ATOM 4 O MET q 1 227.621 2.527 233.593 1.00 -1.00 \ ATOM 5 CB MET q 1 224.865 1.008 234.490 1.00 -1.00 \ ATOM 6 CG MET q 1 224.370 2.442 234.584 1.00 -1.00 \ ATOM 7 SD MET q 1 222.626 2.573 234.130 1.00 -1.00 \ ATOM 8 CE MET q 1 222.622 1.591 232.645 1.00 -1.00 \ ATOM 9 N ARG q 2 227.271 0.597 232.479 1.00 0.39 \ ATOM 10 CA ARG q 2 228.111 0.989 231.350 1.00 0.39 \ ATOM 11 C ARG q 2 227.733 2.384 230.863 1.00 0.39 \ ATOM 12 O ARG q 2 226.574 2.792 230.920 1.00 0.39 \ ATOM 13 CB ARG q 2 228.013 -0.048 230.217 1.00 0.39 \ ATOM 14 CG ARG q 2 227.875 0.516 228.802 1.00 0.39 \ ATOM 15 CD ARG q 2 228.856 -0.065 227.755 1.00 0.39 \ ATOM 16 NE ARG q 2 228.362 -1.241 227.029 1.00 0.39 \ ATOM 17 CZ ARG q 2 228.566 -1.474 225.730 1.00 0.39 \ ATOM 18 NH1 ARG q 2 229.225 -0.608 224.986 1.00 0.39 \ ATOM 19 NH2 ARG q 2 228.092 -2.566 225.157 1.00 0.39 \ ATOM 20 N ALA q 3 228.739 3.138 230.427 1.00 0.39 \ ATOM 21 CA ALA q 3 228.529 4.535 230.075 1.00 0.39 \ ATOM 22 C ALA q 3 227.614 4.713 228.881 1.00 0.39 \ ATOM 23 O ALA q 3 227.137 5.823 228.651 1.00 0.39 \ ATOM 24 CB ALA q 3 229.869 5.197 229.782 1.00 0.39 \ ATOM 25 N LYS q 4 227.379 3.667 228.106 1.00 0.39 \ ATOM 26 CA LYS q 4 226.499 3.764 226.949 1.00 0.39 \ ATOM 27 C LYS q 4 225.038 3.486 227.294 1.00 0.39 \ ATOM 28 O LYS q 4 224.139 4.072 226.677 1.00 0.39 \ ATOM 29 CB LYS q 4 226.986 2.813 225.849 1.00 0.39 \ ATOM 30 CG LYS q 4 225.886 2.192 225.021 1.00 0.39 \ ATOM 31 CD LYS q 4 226.439 1.336 223.906 1.00 0.39 \ ATOM 32 CE LYS q 4 226.806 2.171 222.726 1.00 0.39 \ ATOM 33 NZ LYS q 4 226.833 1.328 221.540 1.00 0.39 \ ATOM 34 N TRP q 5 224.775 2.619 228.271 1.00 0.39 \ ATOM 35 CA TRP q 5 223.404 2.416 228.709 1.00 0.39 \ ATOM 36 C TRP q 5 222.954 3.502 229.677 1.00 0.39 \ ATOM 37 O TRP q 5 221.761 3.823 229.704 1.00 0.39 \ ATOM 38 CB TRP q 5 223.236 1.041 229.347 1.00 0.39 \ ATOM 39 CG TRP q 5 223.859 -0.116 228.606 1.00 0.39 \ ATOM 40 CD1 TRP q 5 224.586 -1.129 229.156 1.00 0.39 \ ATOM 41 CD2 TRP q 5 223.802 -0.390 227.194 1.00 0.39 \ ATOM 42 NE1 TRP q 5 224.989 -2.003 228.183 1.00 0.39 \ ATOM 43 CE2 TRP q 5 224.514 -1.574 226.971 1.00 0.39 \ ATOM 44 CE3 TRP q 5 223.224 0.252 226.100 1.00 0.39 \ ATOM 45 CZ2 TRP q 5 224.662 -2.127 225.702 1.00 0.39 \ ATOM 46 CZ3 TRP q 5 223.374 -0.309 224.837 1.00 0.39 \ ATOM 47 CH2 TRP q 5 224.086 -1.477 224.652 1.00 0.39 \ ATOM 48 N ARG q 6 223.879 4.073 230.475 1.00 0.39 \ ATOM 49 CA ARG q 6 223.593 5.306 231.216 1.00 0.39 \ ATOM 50 C ARG q 6 223.107 6.394 230.277 1.00 0.39 \ ATOM 51 O ARG q 6 222.269 7.221 230.657 1.00 0.39 \ ATOM 52 CB ARG q 6 224.842 5.805 231.965 1.00 0.39 \ ATOM 53 CG ARG q 6 224.657 6.240 233.453 1.00 0.39 \ ATOM 54 CD ARG q 6 224.196 7.712 233.697 1.00 0.39 \ ATOM 55 NE ARG q 6 225.260 8.587 234.250 1.00 0.39 \ ATOM 56 CZ ARG q 6 225.069 9.693 235.003 1.00 0.39 \ ATOM 57 NH1 ARG q 6 223.839 10.100 235.350 1.00 0.39 \ ATOM 58 NH2 ARG q 6 226.124 10.401 235.428 1.00 0.39 \ ATOM 59 N LYS q 7 223.651 6.427 229.058 1.00 0.39 \ ATOM 60 CA LYS q 7 223.161 7.334 228.031 1.00 0.39 \ ATOM 61 C LYS q 7 221.711 7.028 227.695 1.00 0.39 \ ATOM 62 O LYS q 7 220.818 7.851 227.924 1.00 0.39 \ ATOM 63 CB LYS q 7 224.031 7.217 226.791 1.00 0.39 \ ATOM 64 CG LYS q 7 223.913 8.364 225.857 1.00 0.39 \ ATOM 65 CD LYS q 7 225.145 8.435 224.992 1.00 0.39 \ ATOM 66 CE LYS q 7 224.949 9.397 223.842 1.00 0.39 \ ATOM 67 NZ LYS q 7 226.023 9.287 222.813 1.00 0.39 \ ATOM 68 N LYS q 8 221.462 5.831 227.160 1.00 0.39 \ ATOM 69 CA LYS q 8 220.122 5.307 226.905 1.00 0.39 \ ATOM 70 C LYS q 8 219.166 5.640 228.041 1.00 0.39 \ ATOM 71 O LYS q 8 218.010 6.010 227.810 1.00 0.39 \ ATOM 72 CB LYS q 8 220.193 3.789 226.704 1.00 0.39 \ ATOM 73 CG LYS q 8 218.964 3.148 226.072 1.00 0.39 \ ATOM 74 CD LYS q 8 219.212 1.685 225.763 1.00 0.39 \ ATOM 75 CE LYS q 8 219.671 1.480 224.336 1.00 0.39 \ ATOM 76 NZ LYS q 8 218.522 1.218 223.436 1.00 0.39 \ ATOM 77 N ARG q 9 219.653 5.529 229.275 1.00 0.39 \ ATOM 78 CA ARG q 9 218.801 5.787 230.427 1.00 0.39 \ ATOM 79 C ARG q 9 218.340 7.236 230.456 1.00 0.39 \ ATOM 80 O ARG q 9 217.137 7.508 230.555 1.00 0.39 \ ATOM 81 CB ARG q 9 219.532 5.430 231.717 1.00 0.39 \ ATOM 82 CG ARG q 9 218.670 5.458 232.946 1.00 0.39 \ ATOM 83 CD ARG q 9 219.586 5.592 234.124 1.00 0.39 \ ATOM 84 NE ARG q 9 219.460 4.584 235.181 1.00 0.39 \ ATOM 85 CZ ARG q 9 219.427 3.265 235.001 1.00 0.39 \ ATOM 86 NH1 ARG q 9 219.450 2.746 233.777 1.00 0.39 \ ATOM 87 NH2 ARG q 9 219.355 2.458 236.061 1.00 0.39 \ ATOM 88 N THR q 10 219.285 8.186 230.364 1.00 -2.46 \ ATOM 89 CA THR q 10 218.907 9.599 230.446 1.00 -2.46 \ ATOM 90 C THR q 10 218.140 10.062 229.207 1.00 -2.46 \ ATOM 91 O THR q 10 217.315 10.974 229.303 1.00 -2.46 \ ATOM 92 CB THR q 10 220.135 10.479 230.658 1.00 -2.46 \ ATOM 93 OG1 THR q 10 220.864 10.542 229.438 1.00 -2.46 \ ATOM 94 CG2 THR q 10 221.033 9.908 231.749 1.00 -2.46 \ ATOM 95 N ARG q 11 218.394 9.450 228.046 1.00 0.39 \ ATOM 96 CA ARG q 11 217.574 9.720 226.869 1.00 0.39 \ ATOM 97 C ARG q 11 216.115 9.352 227.122 1.00 0.39 \ ATOM 98 O ARG q 11 215.208 10.154 226.861 1.00 0.39 \ ATOM 99 CB ARG q 11 218.122 8.967 225.654 1.00 0.39 \ ATOM 100 CG ARG q 11 219.480 9.443 225.206 1.00 0.39 \ ATOM 101 CD ARG q 11 219.617 9.381 223.677 1.00 0.39 \ ATOM 102 NE ARG q 11 220.553 10.404 223.166 1.00 0.39 \ ATOM 103 CZ ARG q 11 221.725 10.161 222.568 1.00 0.39 \ ATOM 104 NH1 ARG q 11 222.140 8.906 222.370 1.00 0.39 \ ATOM 105 NH2 ARG q 11 222.481 11.179 222.153 1.00 0.39 \ ATOM 106 N ARG q 12 215.866 8.135 227.621 1.00 0.39 \ ATOM 107 CA ARG q 12 214.512 7.755 228.016 1.00 0.39 \ ATOM 108 C ARG q 12 213.950 8.723 229.045 1.00 0.39 \ ATOM 109 O ARG q 12 212.807 9.174 228.925 1.00 0.39 \ ATOM 110 CB ARG q 12 214.505 6.345 228.587 1.00 0.39 \ ATOM 111 CG ARG q 12 214.913 5.287 227.617 1.00 0.39 \ ATOM 112 CD ARG q 12 214.959 3.936 228.314 1.00 0.39 \ ATOM 113 NE ARG q 12 215.310 2.873 227.384 1.00 0.39 \ ATOM 114 CZ ARG q 12 215.955 1.771 227.741 1.00 0.39 \ ATOM 115 NH1 ARG q 12 216.317 1.595 229.012 1.00 0.39 \ ATOM 116 NH2 ARG q 12 216.242 0.854 226.822 1.00 0.39 \ ATOM 117 N LEU q 13 214.744 9.042 230.074 1.00 0.39 \ ATOM 118 CA LEU q 13 214.308 9.966 231.114 1.00 0.39 \ ATOM 119 C LEU q 13 213.854 11.290 230.527 1.00 0.39 \ ATOM 120 O LEU q 13 212.843 11.851 230.956 1.00 0.39 \ ATOM 121 CB LEU q 13 215.440 10.203 232.103 1.00 0.39 \ ATOM 122 CG LEU q 13 215.036 10.237 233.572 1.00 0.39 \ ATOM 123 CD1 LEU q 13 216.238 10.597 234.434 1.00 0.39 \ ATOM 124 CD2 LEU q 13 213.863 11.182 233.826 1.00 0.39 \ ATOM 125 N LYS q 14 214.595 11.809 229.546 1.00 0.39 \ ATOM 126 CA LYS q 14 214.227 13.082 228.944 1.00 0.39 \ ATOM 127 C LYS q 14 212.920 12.969 228.166 1.00 0.39 \ ATOM 128 O LYS q 14 212.058 13.856 228.269 1.00 0.39 \ ATOM 129 CB LYS q 14 215.361 13.593 228.062 1.00 0.39 \ ATOM 130 CG LYS q 14 216.351 14.440 228.849 1.00 0.39 \ ATOM 131 CD LYS q 14 217.743 14.467 228.218 1.00 0.39 \ ATOM 132 CE LYS q 14 217.890 15.580 227.185 1.00 0.39 \ ATOM 133 NZ LYS q 14 218.942 15.257 226.153 1.00 0.39 \ ATOM 134 N ARG q 15 212.728 11.883 227.406 1.00 0.39 \ ATOM 135 CA ARG q 15 211.474 11.740 226.668 1.00 0.39 \ ATOM 136 C ARG q 15 210.293 11.623 227.617 1.00 0.39 \ ATOM 137 O ARG q 15 209.256 12.256 227.404 1.00 0.39 \ ATOM 138 CB ARG q 15 211.534 10.536 225.737 1.00 0.39 \ ATOM 139 CG ARG q 15 212.226 10.844 224.444 1.00 0.39 \ ATOM 140 CD ARG q 15 211.866 9.840 223.380 1.00 0.39 \ ATOM 141 NE ARG q 15 212.080 8.468 223.836 1.00 0.39 \ ATOM 142 CZ ARG q 15 213.271 7.864 223.899 1.00 0.39 \ ATOM 143 NH1 ARG q 15 214.382 8.511 223.547 1.00 0.39 \ ATOM 144 NH2 ARG q 15 213.363 6.604 224.325 1.00 0.39 \ ATOM 145 N LYS q 16 210.444 10.828 228.681 1.00 0.39 \ ATOM 146 CA LYS q 16 209.414 10.708 229.706 1.00 0.39 \ ATOM 147 C LYS q 16 209.214 12.021 230.441 1.00 0.39 \ ATOM 148 O LYS q 16 208.098 12.338 230.854 1.00 0.39 \ ATOM 149 CB LYS q 16 209.787 9.596 230.686 1.00 0.39 \ ATOM 150 CG LYS q 16 208.712 9.264 231.707 1.00 0.39 \ ATOM 151 CD LYS q 16 209.224 8.357 232.854 1.00 0.39 \ ATOM 152 CE LYS q 16 210.055 9.125 233.894 1.00 0.39 \ ATOM 153 NZ LYS q 16 210.512 8.269 235.026 1.00 0.39 \ ATOM 154 N ARG q 17 210.264 12.807 230.598 1.00 0.39 \ ATOM 155 CA ARG q 17 210.067 14.094 231.236 1.00 0.39 \ ATOM 156 C ARG q 17 209.434 15.091 230.284 1.00 0.39 \ ATOM 157 O ARG q 17 208.553 15.848 230.689 1.00 0.39 \ ATOM 158 CB ARG q 17 211.387 14.627 231.778 1.00 0.39 \ ATOM 159 CG ARG q 17 211.596 14.325 233.259 1.00 0.39 \ ATOM 160 CD ARG q 17 212.417 15.416 233.910 1.00 0.39 \ ATOM 161 NE ARG q 17 213.844 15.180 233.730 1.00 0.39 \ ATOM 162 CZ ARG q 17 214.640 14.699 234.688 1.00 0.39 \ ATOM 163 NH1 ARG q 17 214.138 14.408 235.897 1.00 0.39 \ ATOM 164 NH2 ARG q 17 215.941 14.520 234.446 1.00 0.39 \ ATOM 165 N ARG q 18 209.851 15.103 229.019 1.00 0.39 \ ATOM 166 CA ARG q 18 209.200 15.973 228.046 1.00 0.39 \ ATOM 167 C ARG q 18 207.701 15.722 227.966 1.00 0.39 \ ATOM 168 O ARG q 18 206.933 16.649 227.678 1.00 0.39 \ ATOM 169 CB ARG q 18 209.815 15.775 226.667 1.00 0.39 \ ATOM 170 CG ARG q 18 210.647 16.950 226.189 1.00 0.39 \ ATOM 171 CD ARG q 18 210.529 17.179 224.672 1.00 0.39 \ ATOM 172 NE ARG q 18 209.290 17.881 224.296 1.00 0.39 \ ATOM 173 CZ ARG q 18 209.070 18.461 223.103 1.00 0.39 \ ATOM 174 NH1 ARG q 18 207.888 19.066 222.856 1.00 0.39 \ ATOM 175 NH2 ARG q 18 210.031 18.436 222.153 1.00 0.39 \ ATOM 176 N LYS q 19 207.273 14.472 228.200 1.00 0.39 \ ATOM 177 CA LYS q 19 205.857 14.109 228.133 1.00 0.39 \ ATOM 178 C LYS q 19 205.089 14.646 229.331 1.00 0.39 \ ATOM 179 O LYS q 19 204.014 15.238 229.177 1.00 0.39 \ ATOM 180 CB LYS q 19 205.700 12.591 228.063 1.00 0.39 \ ATOM 181 CG LYS q 19 205.396 12.019 226.672 1.00 0.39 \ ATOM 182 CD LYS q 19 206.654 11.805 225.821 1.00 0.39 \ ATOM 183 CE LYS q 19 206.341 11.121 224.482 1.00 0.39 \ ATOM 184 NZ LYS q 19 205.920 9.676 224.602 1.00 0.39 \ ATOM 185 N VAL q 20 205.623 14.431 230.538 1.00 -2.46 \ ATOM 186 CA VAL q 20 204.984 14.933 231.755 1.00 -2.46 \ ATOM 187 C VAL q 20 204.725 16.434 231.656 1.00 -2.46 \ ATOM 188 O VAL q 20 203.708 16.940 232.144 1.00 -2.46 \ ATOM 189 CB VAL q 20 205.842 14.588 232.989 1.00 -2.46 \ ATOM 190 CG1 VAL q 20 205.095 14.924 234.260 1.00 -2.46 \ ATOM 191 CG2 VAL q 20 206.214 13.134 232.979 1.00 -2.46 \ ATOM 192 N ARG q 21 205.636 17.175 231.025 1.00 0.39 \ ATOM 193 CA ARG q 21 205.438 18.616 230.916 1.00 0.39 \ ATOM 194 C ARG q 21 204.306 18.936 229.952 1.00 0.39 \ ATOM 195 O ARG q 21 203.397 19.713 230.274 1.00 0.39 \ ATOM 196 CB ARG q 21 206.724 19.295 230.464 1.00 0.39 \ ATOM 197 CG ARG q 21 206.650 20.802 230.565 1.00 0.39 \ ATOM 198 CD ARG q 21 207.881 21.351 231.260 1.00 0.39 \ ATOM 199 NE ARG q 21 208.819 21.975 230.337 1.00 0.39 \ ATOM 200 CZ ARG q 21 209.079 23.268 230.317 1.00 0.39 \ ATOM 201 NH1 ARG q 21 208.483 24.064 231.179 1.00 0.39 \ ATOM 202 NH2 ARG q 21 209.939 23.755 229.448 1.00 0.39 \ ATOM 203 N ALA q 22 204.347 18.329 228.762 1.00 -2.46 \ ATOM 204 CA ALA q 22 203.288 18.507 227.772 1.00 -2.46 \ ATOM 205 C ALA q 22 201.901 18.265 228.352 1.00 -2.46 \ ATOM 206 O ALA q 22 200.925 18.858 227.879 1.00 -2.46 \ ATOM 207 CB ALA q 22 203.527 17.564 226.598 1.00 -2.46 \ ATOM 208 N ARG q 23 201.803 17.390 229.366 1.00 0.39 \ ATOM 209 CA ARG q 23 200.562 17.153 230.106 1.00 0.39 \ ATOM 210 C ARG q 23 199.928 18.456 230.567 1.00 0.39 \ ATOM 211 O ARG q 23 198.707 18.534 230.758 1.00 0.39 \ ATOM 212 CB ARG q 23 200.859 16.262 231.319 1.00 0.39 \ ATOM 213 CG ARG q 23 199.690 15.522 231.907 1.00 0.39 \ ATOM 214 CD ARG q 23 200.023 14.044 231.952 1.00 0.39 \ ATOM 215 NE ARG q 23 200.478 13.589 233.274 1.00 0.39 \ ATOM 216 CZ ARG q 23 199.652 13.161 234.240 1.00 0.39 \ ATOM 217 NH1 ARG q 23 198.337 13.157 234.005 1.00 0.39 \ ATOM 218 NH2 ARG q 23 200.122 12.741 235.427 1.00 0.39 \ ATOM 219 N SER q 24 200.747 19.477 230.767 1.00 -1.00 \ ATOM 220 CA SER q 24 200.321 20.813 231.137 1.00 -1.00 \ ATOM 221 C SER q 24 200.590 21.750 229.976 1.00 -1.00 \ ATOM 222 O SER q 24 201.083 22.863 230.170 1.00 -1.00 \ ATOM 223 CB SER q 24 201.068 21.264 232.386 1.00 -1.00 \ ATOM 224 OG SER q 24 202.217 20.416 232.606 1.00 -1.00 \ ATOM 225 N LYS q 25 200.320 21.260 228.756 1.00 -1.00 \ ATOM 226 CA LYS q 25 200.638 21.914 227.463 1.00 -1.00 \ ATOM 227 C LYS q 25 202.090 22.436 227.367 1.00 -1.00 \ ATOM 228 O LYS q 25 202.967 22.140 228.204 1.00 -1.00 \ ATOM 229 CB LYS q 25 199.665 23.073 227.174 1.00 -1.00 \ ATOM 230 CG LYS q 25 198.180 22.768 227.457 1.00 -1.00 \ ATOM 231 CD LYS q 25 197.547 21.866 226.384 1.00 -1.00 \ ATOM 232 CE LYS q 25 196.028 21.668 226.596 1.00 -1.00 \ ATOM 233 NZ LYS q 25 195.293 21.286 225.328 1.00 -1.00 \ """, "e5lybq11_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5lybq11_csv", state=0, origin=1) cmd.zoom("e5lybq11_csv", animate=-1)