cmd.read_pdbstr("""\ ATOM 1 N VAL 1 2 124.406 120.970 1.544 1.00 -1.00 \ ATOM 2 CA VAL 1 2 124.231 121.454 0.106 1.00 -1.00 \ ATOM 3 C VAL 1 2 122.836 121.105 -0.518 1.00 -1.00 \ ATOM 4 O VAL 1 2 122.589 121.349 -1.710 1.00 -1.00 \ ATOM 5 CB VAL 1 2 125.480 121.007 -0.742 1.00 -1.00 \ ATOM 6 CG1 VAL 1 2 125.168 120.338 -2.072 1.00 -1.00 \ ATOM 7 CG2 VAL 1 2 126.456 122.161 -0.947 1.00 -1.00 \ ATOM 8 N ASN 1 3 121.918 120.618 0.317 1.00 -0.47 \ ATOM 9 CA ASN 1 3 120.643 120.055 -0.103 1.00 -0.47 \ ATOM 10 C ASN 1 3 119.870 121.073 -0.882 1.00 -0.47 \ ATOM 11 O ASN 1 3 119.309 120.774 -1.922 1.00 -0.47 \ ATOM 12 CB ASN 1 3 119.791 119.643 1.105 1.00 -0.47 \ ATOM 13 CG ASN 1 3 120.474 118.599 1.983 1.00 -0.47 \ ATOM 14 OD1 ASN 1 3 120.805 117.499 1.519 1.00 -0.47 \ ATOM 15 ND2 ASN 1 3 120.693 118.939 3.261 1.00 -0.47 \ ATOM 16 N GLN 1 4 119.832 122.290 -0.356 1.00 0.23 \ ATOM 17 CA GLN 1 4 119.095 123.346 -0.998 1.00 0.23 \ ATOM 18 C GLN 1 4 119.534 123.535 -2.457 1.00 0.23 \ ATOM 19 O GLN 1 4 118.702 123.584 -3.362 1.00 0.23 \ ATOM 20 CB GLN 1 4 119.213 124.643 -0.187 1.00 0.23 \ ATOM 21 CG GLN 1 4 117.901 125.396 -0.027 1.00 0.23 \ ATOM 22 CD GLN 1 4 117.652 125.898 1.393 1.00 0.23 \ ATOM 23 OE1 GLN 1 4 118.488 126.612 1.957 1.00 0.23 \ ATOM 24 NE2 GLN 1 4 116.495 125.542 1.973 1.00 0.23 \ ATOM 25 N HIS 1 5 120.843 123.581 -2.677 1.00 -0.04 \ ATOM 26 CA HIS 1 5 121.396 123.845 -3.980 1.00 -0.04 \ ATOM 27 C HIS 1 5 121.079 122.741 -5.009 1.00 -0.04 \ ATOM 28 O HIS 1 5 120.698 123.033 -6.144 1.00 -0.04 \ ATOM 29 CB HIS 1 5 122.919 124.005 -3.854 1.00 -0.04 \ ATOM 30 CG HIS 1 5 123.570 124.339 -5.144 1.00 -0.04 \ ATOM 31 ND1 HIS 1 5 123.372 125.553 -5.774 1.00 -0.04 \ ATOM 32 CD2 HIS 1 5 124.369 123.614 -5.954 1.00 -0.04 \ ATOM 33 CE1 HIS 1 5 124.028 125.562 -6.915 1.00 -0.04 \ ATOM 34 NE2 HIS 1 5 124.644 124.400 -7.044 1.00 -0.04 \ ATOM 35 N LEU 1 6 121.286 121.495 -4.582 1.00 1.15 \ ATOM 36 CA LEU 1 6 120.888 120.296 -5.300 1.00 1.15 \ ATOM 37 C LEU 1 6 119.402 120.310 -5.633 1.00 1.15 \ ATOM 38 O LEU 1 6 119.035 120.029 -6.780 1.00 1.15 \ ATOM 39 CB LEU 1 6 121.245 118.985 -4.521 1.00 1.15 \ ATOM 40 CG LEU 1 6 122.703 118.683 -4.193 1.00 1.15 \ ATOM 41 CD1 LEU 1 6 122.869 117.319 -3.525 1.00 1.15 \ ATOM 42 CD2 LEU 1 6 123.628 118.786 -5.400 1.00 1.15 \ ATOM 43 N CYS 1 7 118.551 120.638 -4.663 1.00 1.70 \ ATOM 44 CA CYS 1 7 117.100 120.736 -4.900 1.00 1.70 \ ATOM 45 C CYS 1 7 116.727 121.789 -5.969 1.00 1.70 \ ATOM 46 O CYS 1 7 115.835 121.538 -6.803 1.00 1.70 \ ATOM 47 CB CYS 1 7 116.365 121.032 -3.595 1.00 1.70 \ ATOM 48 SG CYS 1 7 114.542 121.212 -3.668 1.00 1.70 \ ATOM 49 N GLY 1 8 117.388 122.953 -5.949 1.00 0.71 \ ATOM 50 CA GLY 1 8 117.219 123.981 -7.004 1.00 0.71 \ ATOM 51 C GLY 1 8 117.484 123.443 -8.433 1.00 0.71 \ ATOM 52 O GLY 1 8 116.859 123.875 -9.383 1.00 0.71 \ ATOM 53 N SER 1 9 118.437 122.525 -8.562 1.00 -0.48 \ ATOM 54 CA SER 1 9 118.739 121.845 -9.818 1.00 -0.48 \ ATOM 55 C SER 1 9 117.540 121.027 -10.272 1.00 -0.48 \ ATOM 56 O SER 1 9 117.191 121.024 -11.440 1.00 -0.48 \ ATOM 57 CB SER 1 9 119.985 120.954 -9.621 1.00 -0.48 \ ATOM 58 OG SER 1 9 120.154 120.030 -10.655 1.00 -0.48 \ ATOM 59 N HIS 1 10 116.901 120.342 -9.338 1.00 -0.23 \ ATOM 60 CA HIS 1 10 115.662 119.597 -9.632 1.00 -0.23 \ ATOM 61 C HIS 1 10 114.465 120.561 -9.913 1.00 -0.23 \ ATOM 62 O HIS 1 10 113.679 120.368 -10.859 1.00 -0.23 \ ATOM 63 CB HIS 1 10 115.364 118.633 -8.494 1.00 -0.23 \ ATOM 64 CG HIS 1 10 116.344 117.506 -8.391 1.00 -0.23 \ ATOM 65 ND1 HIS 1 10 116.166 116.314 -9.043 1.00 -0.23 \ ATOM 66 CD2 HIS 1 10 117.531 117.401 -7.754 1.00 -0.23 \ ATOM 67 CE1 HIS 1 10 117.212 115.536 -8.853 1.00 -0.23 \ ATOM 68 NE2 HIS 1 10 118.042 116.156 -8.039 1.00 -0.23 \ ATOM 69 N LEU 1 11 114.402 121.647 -9.160 1.00 1.70 \ ATOM 70 CA LEU 1 11 113.373 122.628 -9.361 1.00 1.70 \ ATOM 71 C LEU 1 11 113.393 123.235 -10.756 1.00 1.70 \ ATOM 72 O LEU 1 11 112.334 123.288 -11.395 1.00 1.70 \ ATOM 73 CB LEU 1 11 113.440 123.723 -8.337 1.00 1.70 \ ATOM 74 CG LEU 1 11 113.026 123.345 -6.922 1.00 1.70 \ ATOM 75 CD1 LEU 1 11 113.360 124.513 -6.015 1.00 1.70 \ ATOM 76 CD2 LEU 1 11 111.552 122.965 -6.821 1.00 1.70 \ ATOM 77 N VAL 1 12 114.557 123.720 -11.203 1.00 0.71 \ ATOM 78 CA VAL 1 12 114.627 124.361 -12.506 1.00 0.71 \ ATOM 79 C VAL 1 12 114.268 123.403 -13.642 1.00 0.71 \ ATOM 80 O VAL 1 12 113.585 123.817 -14.579 1.00 0.71 \ ATOM 81 CB VAL 1 12 115.954 125.087 -12.790 1.00 0.71 \ ATOM 82 CG1 VAL 1 12 116.102 126.283 -11.851 1.00 0.71 \ ATOM 83 CG2 VAL 1 12 117.156 124.174 -12.750 1.00 0.71 \ ATOM 84 N GLU 1 13 114.662 122.123 -13.535 1.00 0.66 \ ATOM 85 CA GLU 1 13 114.264 121.132 -14.532 1.00 0.66 \ ATOM 86 C GLU 1 13 112.758 120.946 -14.545 1.00 0.66 \ ATOM 87 O GLU 1 13 112.170 120.835 -15.619 1.00 0.66 \ ATOM 88 CB GLU 1 13 114.981 119.791 -14.337 1.00 0.66 \ ATOM 89 N ALA 1 14 112.140 120.920 -13.346 1.00 -0.02 \ ATOM 90 CA ALA 1 14 110.686 120.988 -13.186 1.00 -0.02 \ ATOM 91 C ALA 1 14 110.035 122.240 -13.814 1.00 -0.02 \ ATOM 92 O ALA 1 14 109.068 122.112 -14.554 1.00 -0.02 \ ATOM 93 CB ALA 1 14 110.273 120.853 -11.713 1.00 -0.02 \ ATOM 94 N LEU 1 15 110.555 123.441 -13.549 1.00 1.70 \ ATOM 95 CA LEU 1 15 109.908 124.608 -14.128 1.00 1.70 \ ATOM 96 C LEU 1 15 110.050 124.533 -15.635 1.00 1.70 \ ATOM 97 O LEU 1 15 109.142 124.998 -16.328 1.00 1.70 \ ATOM 98 CB LEU 1 15 110.475 125.944 -13.608 1.00 1.70 \ ATOM 99 CG LEU 1 15 110.402 126.180 -12.107 1.00 1.70 \ ATOM 100 CD1 LEU 1 15 111.384 127.222 -11.578 1.00 1.70 \ ATOM 101 CD2 LEU 1 15 108.975 126.521 -11.746 1.00 1.70 \ ATOM 102 N TYR 1 16 111.165 123.979 -16.154 1.00 -0.22 \ ATOM 103 CA TYR 1 16 111.378 123.914 -17.601 1.00 -0.22 \ ATOM 104 C TYR 1 16 110.228 123.208 -18.277 1.00 -0.22 \ ATOM 105 O TYR 1 16 109.670 123.699 -19.295 1.00 -0.22 \ ATOM 106 CB TYR 1 16 112.687 123.194 -17.964 1.00 -0.22 \ ATOM 107 CG TYR 1 16 112.782 122.785 -19.409 1.00 -0.22 \ ATOM 108 CD1 TYR 1 16 113.033 123.724 -20.409 1.00 -0.22 \ ATOM 109 CD2 TYR 1 16 112.634 121.466 -19.786 1.00 -0.22 \ ATOM 110 CE1 TYR 1 16 113.132 123.358 -21.734 1.00 -0.22 \ ATOM 111 CE2 TYR 1 16 112.736 121.100 -21.106 1.00 -0.22 \ ATOM 112 CZ TYR 1 16 112.952 122.055 -22.068 1.00 -0.22 \ ATOM 113 OH TYR 1 16 113.043 121.668 -23.381 1.00 -0.22 \ ATOM 114 N LEU 1 17 109.900 122.048 -17.713 1.00 -0.23 \ ATOM 115 CA LEU 1 17 108.830 121.195 -18.206 1.00 -0.23 \ ATOM 116 C LEU 1 17 107.451 121.844 -17.981 1.00 -0.23 \ ATOM 117 O LEU 1 17 106.661 121.863 -18.885 1.00 -0.23 \ ATOM 118 CB LEU 1 17 108.876 119.802 -17.555 1.00 -0.23 \ ATOM 119 CG LEU 1 17 109.845 118.774 -18.155 1.00 -0.23 \ ATOM 120 CD1 LEU 1 17 110.099 117.625 -17.196 1.00 -0.23 \ ATOM 121 CD2 LEU 1 17 109.303 118.243 -19.462 1.00 -0.23 \ ATOM 122 N VAL 1 18 107.202 122.393 -16.796 1.00 0.26 \ ATOM 123 CA VAL 1 18 105.897 122.939 -16.441 1.00 0.26 \ ATOM 124 C VAL 1 18 105.599 124.274 -17.142 1.00 0.26 \ ATOM 125 O VAL 1 18 104.506 124.500 -17.606 1.00 0.26 \ ATOM 126 CB VAL 1 18 105.784 123.121 -14.905 1.00 0.26 \ ATOM 127 CG1 VAL 1 18 104.553 123.940 -14.494 1.00 0.26 \ ATOM 128 CG2 VAL 1 18 105.773 121.748 -14.232 1.00 0.26 \ ATOM 129 N CYS 1 19 106.570 125.165 -17.164 1.00 1.70 \ ATOM 130 CA CYS 1 19 106.388 126.450 -17.799 1.00 1.70 \ ATOM 131 C CYS 1 19 106.313 126.403 -19.343 1.00 1.70 \ ATOM 132 O CYS 1 19 105.701 127.283 -19.948 1.00 1.70 \ ATOM 133 CB CYS 1 19 107.464 127.417 -17.327 1.00 1.70 \ ATOM 134 SG CYS 1 19 107.532 127.625 -15.526 1.00 1.70 \ ATOM 135 N GLY 1 20 106.912 125.387 -19.972 1.00 -0.16 \ ATOM 136 CA GLY 1 20 106.919 125.251 -21.436 1.00 -0.16 \ ATOM 137 C GLY 1 20 107.345 126.549 -22.100 1.00 -0.16 \ ATOM 138 O GLY 1 20 108.308 127.176 -21.662 1.00 -0.16 \ ATOM 139 N GLU 1 21 106.595 126.965 -23.124 1.00 0.19 \ ATOM 140 CA GLU 1 21 106.858 128.210 -23.871 1.00 0.19 \ ATOM 141 C GLU 1 21 106.901 129.473 -22.991 1.00 0.19 \ ATOM 142 O GLU 1 21 107.680 130.386 -23.262 1.00 0.19 \ ATOM 143 CB GLU 1 21 105.835 128.393 -25.021 1.00 0.19 \ ATOM 144 CG GLU 1 21 106.076 127.508 -26.251 1.00 0.19 \ ATOM 145 CD GLU 1 21 105.013 127.666 -27.344 1.00 0.19 \ ATOM 146 OE1 GLU 1 21 103.812 127.435 -27.059 1.00 0.19 \ ATOM 147 OE2 GLU 1 21 105.373 127.997 -28.502 1.00 0.19 \ ATOM 148 N ARG 1 22 106.112 129.507 -21.918 1.00 -0.61 \ ATOM 149 CA ARG 1 22 106.080 130.678 -21.042 1.00 -0.61 \ ATOM 150 C ARG 1 22 107.421 131.034 -20.353 1.00 -0.61 \ ATOM 151 O ARG 1 22 107.614 132.190 -19.939 1.00 -0.61 \ ATOM 152 CB ARG 1 22 104.982 130.536 -19.979 1.00 -0.61 \ ATOM 153 CG ARG 1 22 103.543 130.521 -20.492 1.00 -0.61 \ ATOM 154 CD ARG 1 22 102.581 130.287 -19.320 1.00 -0.61 \ ATOM 155 NE ARG 1 22 102.500 128.866 -18.940 1.00 -0.61 \ ATOM 156 CZ ARG 1 22 101.891 128.368 -17.860 1.00 -0.61 \ ATOM 157 NH1 ARG 1 22 101.288 129.156 -16.971 1.00 -0.61 \ ATOM 158 NH2 ARG 1 22 101.901 127.048 -17.660 1.00 -0.61 \ ATOM 159 N GLY 1 23 108.337 130.067 -20.212 1.00 1.70 \ ATOM 160 CA GLY 1 23 109.593 130.322 -19.500 1.00 1.70 \ ATOM 161 C GLY 1 23 109.419 130.619 -18.008 1.00 1.70 \ ATOM 162 O GLY 1 23 108.331 130.476 -17.451 1.00 1.70 \ ATOM 163 N PHE 1 24 110.491 131.031 -17.354 1.00 1.13 \ ATOM 164 CA PHE 1 24 110.415 131.303 -15.945 1.00 1.13 \ ATOM 165 C PHE 1 24 111.592 132.112 -15.506 1.00 1.13 \ ATOM 166 O PHE 1 24 112.590 132.241 -16.210 1.00 1.13 \ ATOM 167 CB PHE 1 24 110.353 129.988 -15.115 1.00 1.13 \ ATOM 168 CG PHE 1 24 111.578 129.138 -15.235 1.00 1.13 \ ATOM 169 CD1 PHE 1 24 112.665 129.332 -14.398 1.00 1.13 \ ATOM 170 CD2 PHE 1 24 111.662 128.164 -16.209 1.00 1.13 \ ATOM 171 CE1 PHE 1 24 113.800 128.560 -14.535 1.00 1.13 \ ATOM 172 CE2 PHE 1 24 112.807 127.394 -16.365 1.00 1.13 \ ATOM 173 CZ PHE 1 24 113.867 127.586 -15.517 1.00 1.13 \ ATOM 174 N PHE 1 25 111.444 132.619 -14.300 1.00 0.51 \ ATOM 175 CA PHE 1 25 112.433 133.387 -13.586 1.00 0.51 \ ATOM 176 C PHE 1 25 112.700 132.534 -12.338 1.00 0.51 \ ATOM 177 O PHE 1 25 111.757 132.119 -11.654 1.00 0.51 \ ATOM 178 CB PHE 1 25 111.814 134.743 -13.179 1.00 0.51 \ ATOM 179 CG PHE 1 25 112.708 135.920 -13.419 1.00 0.51 \ ATOM 180 CD1 PHE 1 25 112.659 136.605 -14.634 1.00 0.51 \ ATOM 181 CD2 PHE 1 25 113.608 136.342 -12.435 1.00 0.51 \ ATOM 182 CE1 PHE 1 25 113.491 137.693 -14.866 1.00 0.51 \ ATOM 183 CE2 PHE 1 25 114.448 137.429 -12.663 1.00 0.51 \ ATOM 184 CZ PHE 1 25 114.392 138.103 -13.884 1.00 0.51 \ ATOM 185 N TYR 1 26 113.966 132.257 -12.074 1.00 -0.25 \ ATOM 186 CA TYR 1 26 114.363 131.522 -10.908 1.00 -0.25 \ ATOM 187 C TYR 1 26 115.274 132.457 -10.120 1.00 -0.25 \ ATOM 188 O TYR 1 26 116.358 132.807 -10.580 1.00 -0.25 \ ATOM 189 CB TYR 1 26 115.097 130.229 -11.293 1.00 -0.25 \ ATOM 190 CG TYR 1 26 115.635 129.488 -10.113 1.00 -0.25 \ ATOM 191 CD1 TYR 1 26 114.823 128.706 -9.327 1.00 -0.25 \ ATOM 192 CD2 TYR 1 26 116.959 129.563 -9.791 1.00 -0.25 \ ATOM 193 CE1 TYR 1 26 115.342 128.023 -8.226 1.00 -0.25 \ ATOM 194 CE2 TYR 1 26 117.483 128.898 -8.697 1.00 -0.25 \ ATOM 195 CZ TYR 1 26 116.681 128.140 -7.922 1.00 -0.25 \ ATOM 196 OH TYR 1 26 117.254 127.494 -6.857 1.00 -0.25 \ ATOM 197 N THR 1 27 114.812 132.815 -8.927 1.00 -0.98 \ ATOM 198 CA THR 1 27 115.445 133.798 -8.061 1.00 -0.98 \ ATOM 199 C THR 1 27 115.359 133.209 -6.654 1.00 -0.98 \ ATOM 200 O THR 1 27 114.300 133.270 -6.039 1.00 -0.98 \ ATOM 201 CB THR 1 27 114.727 135.188 -8.159 1.00 -0.98 \ ATOM 202 OG1 THR 1 27 113.502 135.069 -8.909 1.00 -0.98 \ ATOM 203 CG2 THR 1 27 115.610 136.227 -8.869 1.00 -0.98 \ ATOM 204 N PRO 1 28 116.453 132.583 -6.170 1.00 -0.79 \ ATOM 205 CA PRO 1 28 116.481 132.011 -4.835 1.00 -0.79 \ ATOM 206 C PRO 1 28 116.830 133.064 -3.790 1.00 -0.79 \ ATOM 207 O PRO 1 28 116.886 132.750 -2.604 1.00 -0.79 \ ATOM 208 CB PRO 1 28 117.595 130.972 -4.940 1.00 -0.79 \ ATOM 209 CG PRO 1 28 118.565 131.574 -5.897 1.00 -0.79 \ ATOM 210 CD PRO 1 28 117.775 132.470 -6.818 1.00 -0.79 \ """, "e5mam11_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mam11_csv", state=0, origin=1) cmd.zoom("e5mam11_csv", animate=-1)