cmd.read_pdbstr("""\ ATOM 1 N HIS 3 5 83.566 128.767 -54.125 1.00 -0.04 \ ATOM 2 CA HIS 3 5 83.127 128.509 -52.719 1.00 -0.04 \ ATOM 3 C HIS 3 5 83.622 129.651 -51.789 1.00 -0.04 \ ATOM 4 O HIS 3 5 82.830 130.487 -51.454 1.00 -0.04 \ ATOM 5 CB HIS 3 5 83.548 127.089 -52.222 1.00 -0.04 \ ATOM 6 CG HIS 3 5 82.461 126.035 -52.285 1.00 -0.04 \ ATOM 7 ND1 HIS 3 5 81.339 126.130 -53.088 1.00 -0.04 \ ATOM 8 CD2 HIS 3 5 82.360 124.838 -51.650 1.00 -0.04 \ ATOM 9 CE1 HIS 3 5 80.589 125.052 -52.925 1.00 -0.04 \ ATOM 10 NE2 HIS 3 5 81.186 124.252 -52.059 1.00 -0.04 \ ATOM 11 N LEU 3 6 84.916 129.727 -51.445 1.00 1.15 \ ATOM 12 CA LEU 3 6 85.399 130.558 -50.289 1.00 1.15 \ ATOM 13 C LEU 3 6 86.291 131.756 -50.619 1.00 1.15 \ ATOM 14 O LEU 3 6 87.491 131.607 -50.816 1.00 1.15 \ ATOM 15 CB LEU 3 6 86.124 129.663 -49.259 1.00 1.15 \ ATOM 16 CG LEU 3 6 85.262 128.570 -48.616 1.00 1.15 \ ATOM 17 CD1 LEU 3 6 86.033 127.728 -47.597 1.00 1.15 \ ATOM 18 CD2 LEU 3 6 84.038 129.197 -47.960 1.00 1.15 \ ATOM 19 N CYS 3 7 85.716 132.949 -50.615 1.00 1.70 \ ATOM 20 CA CYS 3 7 86.417 134.165 -50.995 1.00 1.70 \ ATOM 21 C CYS 3 7 86.255 135.281 -49.961 1.00 1.70 \ ATOM 22 O CYS 3 7 85.239 135.365 -49.283 1.00 1.70 \ ATOM 23 CB CYS 3 7 85.882 134.641 -52.333 1.00 1.70 \ ATOM 24 SG CYS 3 7 85.987 133.353 -53.608 1.00 1.70 \ ATOM 25 N GLY 3 8 87.270 136.134 -49.842 1.00 0.71 \ ATOM 26 CA GLY 3 8 87.151 137.383 -49.082 1.00 0.71 \ ATOM 27 C GLY 3 8 87.056 137.008 -47.622 1.00 0.71 \ ATOM 28 O GLY 3 8 87.798 136.131 -47.159 1.00 0.71 \ ATOM 29 N SER 3 9 86.137 137.640 -46.911 0.50 -0.48 \ ATOM 30 CA SER 3 9 85.981 137.452 -45.482 0.50 -0.48 \ ATOM 31 C SER 3 9 85.415 136.066 -45.101 0.50 -0.48 \ ATOM 32 O SER 3 9 85.606 135.601 -43.973 0.50 -0.48 \ ATOM 33 CB SER 3 9 85.045 138.530 -44.964 0.50 -0.48 \ ATOM 34 OG SER 3 9 83.733 138.232 -45.355 0.50 -0.48 \ ATOM 35 N HIS 3 10 84.718 135.422 -46.037 1.00 -0.23 \ ATOM 36 CA HIS 3 10 84.242 134.035 -45.879 1.00 -0.23 \ ATOM 37 C HIS 3 10 85.352 132.987 -45.830 1.00 -0.23 \ ATOM 38 O HIS 3 10 85.229 131.951 -45.203 1.00 -0.23 \ ATOM 39 CB HIS 3 10 83.312 133.708 -47.050 1.00 -0.23 \ ATOM 40 CG HIS 3 10 82.087 134.568 -47.080 1.00 -0.23 \ ATOM 41 ND1 HIS 3 10 81.208 134.621 -46.021 1.00 -0.23 \ ATOM 42 CD2 HIS 3 10 81.618 135.429 -48.005 1.00 -0.23 \ ATOM 43 CE1 HIS 3 10 80.245 135.475 -46.299 1.00 -0.23 \ ATOM 44 NE2 HIS 3 10 80.479 135.988 -47.493 1.00 -0.23 \ ATOM 45 N LEU 3 11 86.432 133.251 -46.536 1.00 1.70 \ ATOM 46 CA LEU 3 11 87.633 132.461 -46.395 1.00 1.70 \ ATOM 47 C LEU 3 11 88.216 132.616 -45.005 1.00 1.70 \ ATOM 48 O LEU 3 11 88.603 131.628 -44.402 1.00 1.70 \ ATOM 49 CB LEU 3 11 88.681 132.884 -47.441 1.00 1.70 \ ATOM 50 CG LEU 3 11 90.009 132.092 -47.545 1.00 1.70 \ ATOM 51 CD1 LEU 3 11 89.762 130.591 -47.470 1.00 1.70 \ ATOM 52 CD2 LEU 3 11 90.716 132.473 -48.840 1.00 1.70 \ ATOM 53 N VAL 3 12 88.312 133.849 -44.507 1.00 0.71 \ ATOM 54 CA VAL 3 12 88.850 134.068 -43.173 1.00 0.71 \ ATOM 55 C VAL 3 12 87.961 133.433 -42.110 1.00 0.71 \ ATOM 56 O VAL 3 12 88.501 132.872 -41.176 1.00 0.71 \ ATOM 57 CB VAL 3 12 89.076 135.560 -42.839 1.00 0.71 \ ATOM 58 CG1 VAL 3 12 89.458 135.742 -41.394 1.00 0.71 \ ATOM 59 CG2 VAL 3 12 90.134 136.115 -43.756 1.00 0.71 \ ATOM 60 N GLU 3 13 86.636 133.549 -42.221 1.00 0.67 \ ATOM 61 CA GLU 3 13 85.686 132.830 -41.310 1.00 0.67 \ ATOM 62 C GLU 3 13 85.846 131.298 -41.331 1.00 0.67 \ ATOM 63 O GLU 3 13 85.760 130.672 -40.295 1.00 0.67 \ ATOM 64 CB GLU 3 13 84.216 133.087 -41.688 1.00 0.67 \ ATOM 65 CG GLU 3 13 83.684 134.492 -41.426 1.00 0.67 \ ATOM 66 CD GLU 3 13 82.351 134.785 -42.127 1.00 0.67 \ ATOM 67 OE1 GLU 3 13 81.761 133.893 -42.827 1.00 0.67 \ ATOM 68 OE2 GLU 3 13 81.891 135.938 -41.957 1.00 0.67 \ ATOM 69 N ALA 3 14 86.034 130.701 -42.517 1.00 -0.02 \ ATOM 70 CA ALA 3 14 86.255 129.269 -42.589 1.00 -0.02 \ ATOM 71 C ALA 3 14 87.599 128.923 -41.947 1.00 -0.02 \ ATOM 72 O ALA 3 14 87.755 127.864 -41.289 1.00 -0.02 \ ATOM 73 CB ALA 3 14 86.208 128.786 -44.035 1.00 -0.02 \ ATOM 74 N LEU 3 15 88.603 129.774 -42.176 1.00 1.70 \ ATOM 75 CA LEU 3 15 89.903 129.534 -41.555 1.00 1.70 \ ATOM 76 C LEU 3 15 89.727 129.572 -40.049 1.00 1.70 \ ATOM 77 O LEU 3 15 90.317 128.781 -39.377 1.00 1.70 \ ATOM 78 CB LEU 3 15 90.981 130.539 -41.976 1.00 1.70 \ ATOM 79 CG LEU 3 15 91.715 130.242 -43.274 1.00 1.70 \ ATOM 80 CD1 LEU 3 15 92.523 131.459 -43.740 1.00 1.70 \ ATOM 81 CD2 LEU 3 15 92.597 128.992 -43.103 1.00 1.70 \ ATOM 82 N TYR 3 16 88.891 130.460 -39.529 1.00 -0.22 \ ATOM 83 CA TYR 3 16 88.680 130.526 -38.075 1.00 -0.22 \ ATOM 84 C TYR 3 16 87.933 129.326 -37.540 1.00 -0.22 \ ATOM 85 O TYR 3 16 88.185 128.873 -36.444 1.00 -0.22 \ ATOM 86 CB TYR 3 16 87.977 131.829 -37.664 1.00 -0.22 \ ATOM 87 CG TYR 3 16 87.962 131.995 -36.163 1.00 -0.22 \ ATOM 88 CD1 TYR 3 16 86.921 131.477 -35.399 1.00 -0.22 \ ATOM 89 CD2 TYR 3 16 88.999 132.667 -35.507 1.00 -0.22 \ ATOM 90 CE1 TYR 3 16 86.915 131.623 -34.020 1.00 -0.22 \ ATOM 91 CE2 TYR 3 16 89.013 132.801 -34.120 1.00 -0.22 \ ATOM 92 CZ TYR 3 16 87.966 132.275 -33.388 1.00 -0.22 \ ATOM 93 OH TYR 3 16 87.932 132.433 -32.027 1.00 -0.22 \ ATOM 94 N LEU 3 17 86.982 128.828 -38.315 1.00 -0.23 \ ATOM 95 CA LEU 3 17 86.214 127.626 -37.962 1.00 -0.23 \ ATOM 96 C LEU 3 17 87.125 126.373 -37.729 1.00 -0.23 \ ATOM 97 O LEU 3 17 86.897 125.585 -36.815 1.00 -0.23 \ ATOM 98 CB LEU 3 17 85.204 127.333 -39.088 1.00 -0.23 \ ATOM 99 CG LEU 3 17 84.431 126.007 -38.949 1.00 -0.23 \ ATOM 100 CD1 LEU 3 17 83.634 126.014 -37.632 1.00 -0.23 \ ATOM 101 CD2 LEU 3 17 83.524 125.776 -40.144 1.00 -0.23 \ ATOM 102 N VAL 3 18 88.162 126.236 -38.558 1.00 0.26 \ ATOM 103 CA VAL 3 18 89.042 125.079 -38.565 1.00 0.26 \ ATOM 104 C VAL 3 18 90.326 125.328 -37.712 1.00 0.26 \ ATOM 105 O VAL 3 18 90.811 124.401 -37.063 1.00 0.26 \ ATOM 106 CB VAL 3 18 89.360 124.679 -40.028 1.00 0.26 \ ATOM 107 CG1 VAL 3 18 90.317 123.499 -40.106 1.00 0.26 \ ATOM 108 CG2 VAL 3 18 88.098 124.330 -40.782 1.00 0.26 \ ATOM 109 N CYS 3 19 90.859 126.557 -37.705 1.00 1.70 \ ATOM 110 CA CYS 3 19 92.169 126.869 -37.064 1.00 1.70 \ ATOM 111 C CYS 3 19 92.147 127.862 -35.859 1.00 1.70 \ ATOM 112 O CYS 3 19 93.214 128.189 -35.292 1.00 1.70 \ ATOM 113 CB CYS 3 19 93.129 127.442 -38.111 1.00 1.70 \ ATOM 114 SG CYS 3 19 93.332 126.475 -39.606 1.00 1.70 \ ATOM 115 N GLY 3 20 90.952 128.328 -35.486 1.00 -0.16 \ ATOM 116 CA GLY 3 20 90.750 129.410 -34.505 1.00 -0.16 \ ATOM 117 C GLY 3 20 91.311 129.085 -33.140 1.00 -0.16 \ ATOM 118 O GLY 3 20 91.800 129.987 -32.448 1.00 -0.16 \ ATOM 119 N GLU 3 21 91.252 127.805 -32.765 1.00 0.19 \ ATOM 120 CA GLU 3 21 91.881 127.332 -31.517 1.00 0.19 \ ATOM 121 C GLU 3 21 93.430 127.249 -31.614 1.00 0.19 \ ATOM 122 O GLU 3 21 94.116 127.490 -30.629 1.00 0.19 \ ATOM 123 CB GLU 3 21 91.280 125.994 -31.108 1.00 0.19 \ ATOM 124 CG GLU 3 21 89.810 126.126 -30.699 1.00 0.19 \ ATOM 125 CD GLU 3 21 89.210 124.838 -30.167 1.00 0.19 \ ATOM 126 OE1 GLU 3 21 88.987 123.900 -30.980 1.00 0.19 \ ATOM 127 OE2 GLU 3 21 88.959 124.786 -28.933 1.00 0.19 \ ATOM 128 N ARG 3 22 93.948 126.940 -32.806 1.00 -0.61 \ ATOM 129 CA ARG 3 22 95.377 126.741 -33.055 1.00 -0.61 \ ATOM 130 C ARG 3 22 96.107 128.038 -33.465 1.00 -0.61 \ ATOM 131 O ARG 3 22 97.150 128.370 -32.922 1.00 -0.61 \ ATOM 132 CB ARG 3 22 95.575 125.679 -34.136 1.00 -0.61 \ ATOM 133 CG ARG 3 22 95.627 124.263 -33.566 1.00 -0.61 \ ATOM 134 CD ARG 3 22 95.580 123.192 -34.663 1.00 -0.61 \ ATOM 135 NE ARG 3 22 94.204 122.761 -34.963 1.00 -0.61 \ ATOM 136 CZ ARG 3 22 93.836 121.979 -35.984 1.00 -0.61 \ ATOM 137 NH1 ARG 3 22 94.741 121.515 -36.848 1.00 -0.61 \ ATOM 138 NH2 ARG 3 22 92.547 121.680 -36.145 1.00 -0.61 \ ATOM 139 N GLY 3 23 95.515 128.766 -34.398 1.00 1.70 \ ATOM 140 CA GLY 3 23 96.117 129.929 -35.007 1.00 1.70 \ ATOM 141 C GLY 3 23 96.256 129.653 -36.482 1.00 1.70 \ ATOM 142 O GLY 3 23 96.166 128.504 -36.922 1.00 1.70 \ ATOM 143 N PHE 3 24 96.418 130.711 -37.257 1.00 1.13 \ ATOM 144 CA PHE 3 24 96.705 130.571 -38.705 1.00 1.13 \ ATOM 145 C PHE 3 24 97.302 131.885 -39.211 1.00 1.13 \ ATOM 146 O PHE 3 24 97.159 132.940 -38.562 1.00 1.13 \ ATOM 147 CB PHE 3 24 95.449 130.191 -39.482 1.00 1.13 \ ATOM 148 CG PHE 3 24 94.330 131.194 -39.356 1.00 1.13 \ ATOM 149 CD1 PHE 3 24 93.443 131.143 -38.280 1.00 1.13 \ ATOM 150 CD2 PHE 3 24 94.167 132.204 -40.305 1.00 1.13 \ ATOM 151 CE1 PHE 3 24 92.394 132.052 -38.162 1.00 1.13 \ ATOM 152 CE2 PHE 3 24 93.150 133.131 -40.180 1.00 1.13 \ ATOM 153 CZ PHE 3 24 92.252 133.050 -39.099 1.00 1.13 \ ATOM 154 N PHE 3 25 98.023 131.810 -40.319 1.00 0.51 \ ATOM 155 CA PHE 3 25 98.445 133.007 -41.036 1.00 0.51 \ ATOM 156 C PHE 3 25 97.508 133.115 -42.218 1.00 0.51 \ ATOM 157 O PHE 3 25 97.213 132.124 -42.844 1.00 0.51 \ ATOM 158 CB PHE 3 25 99.907 132.936 -41.504 1.00 0.51 \ ATOM 159 N TYR 3 26 97.026 134.330 -42.477 1.00 -0.25 \ ATOM 160 CA TYR 3 26 96.277 134.607 -43.667 1.00 -0.25 \ ATOM 161 C TYR 3 26 97.115 135.551 -44.487 1.00 -0.25 \ ATOM 162 O TYR 3 26 97.503 136.646 -44.021 1.00 -0.25 \ ATOM 163 CB TYR 3 26 94.910 135.215 -43.332 1.00 -0.25 \ ATOM 164 CG TYR 3 26 94.172 135.649 -44.559 1.00 -0.25 \ ATOM 165 CD1 TYR 3 26 93.735 134.732 -45.498 1.00 -0.25 \ ATOM 166 CD2 TYR 3 26 93.933 137.003 -44.794 1.00 -0.25 \ ATOM 167 CE1 TYR 3 26 93.057 135.164 -46.649 1.00 -0.25 \ ATOM 168 CE2 TYR 3 26 93.253 137.438 -45.926 1.00 -0.25 \ ATOM 169 CZ TYR 3 26 92.837 136.527 -46.838 1.00 -0.25 \ ATOM 170 OH TYR 3 26 92.194 137.009 -47.912 1.00 -0.25 \ ATOM 171 N THR 3 27 97.382 135.123 -45.711 1.00 -0.98 \ ATOM 172 CA THR 3 27 98.246 135.842 -46.633 1.00 -0.98 \ ATOM 173 C THR 3 27 97.724 135.593 -48.037 1.00 -0.98 \ ATOM 174 O THR 3 27 98.011 134.556 -48.637 1.00 -0.98 \ ATOM 175 CB THR 3 27 99.709 135.367 -46.530 1.00 -0.98 \ ATOM 176 OG1 THR 3 27 100.523 136.137 -47.437 1.00 -0.98 \ ATOM 177 N PRO 3 28 96.927 136.521 -48.556 1.00 -0.80 \ ATOM 178 CA PRO 3 28 96.367 136.355 -49.882 1.00 -0.80 \ ATOM 179 CB PRO 3 28 95.075 137.154 -49.774 1.00 -0.80 \ ATOM 180 CG PRO 3 28 95.421 138.279 -48.853 1.00 -0.80 \ ATOM 181 CD PRO 3 28 96.474 137.771 -47.922 1.00 -0.80 \ """, "e5mam31_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mam31_csv", state=0, origin=1) cmd.zoom("e5mam31_csv", animate=-1)