cmd.read_pdbstr("""\ ATOM 1 N VAL 5 2 82.433 130.571 -23.787 1.00 -1.00 \ ATOM 2 CA VAL 5 2 82.734 130.855 -25.229 1.00 -1.00 \ ATOM 3 C VAL 5 2 83.177 132.304 -25.619 1.00 -1.00 \ ATOM 4 O VAL 5 2 83.540 132.527 -26.782 1.00 -1.00 \ ATOM 5 CB VAL 5 2 81.514 130.478 -26.098 1.00 -1.00 \ ATOM 6 N ASN 5 3 83.188 133.258 -24.667 1.00 -0.47 \ ATOM 7 CA ASN 5 3 83.168 134.680 -24.978 1.00 -0.47 \ ATOM 8 C ASN 5 3 84.436 135.064 -25.703 1.00 -0.47 \ ATOM 9 O ASN 5 3 84.361 135.768 -26.722 1.00 -0.47 \ ATOM 10 CB ASN 5 3 82.880 135.556 -23.736 1.00 -0.47 \ ATOM 11 N GLN 5 4 85.593 134.554 -25.256 1.00 0.22 \ ATOM 12 CA GLN 5 4 86.859 134.806 -25.977 1.00 0.22 \ ATOM 13 C GLN 5 4 86.812 134.268 -27.415 1.00 0.22 \ ATOM 14 O GLN 5 4 87.224 134.934 -28.365 1.00 0.22 \ ATOM 15 CB GLN 5 4 88.083 134.188 -25.293 1.00 0.22 \ ATOM 16 CG GLN 5 4 88.821 135.098 -24.303 1.00 0.22 \ ATOM 17 CD GLN 5 4 90.135 134.492 -23.808 1.00 0.22 \ ATOM 18 OE1 GLN 5 4 90.801 133.736 -24.517 1.00 0.22 \ ATOM 19 NE2 GLN 5 4 90.511 134.828 -22.585 1.00 0.22 \ ATOM 20 N HIS 5 5 86.333 133.036 -27.543 1.00 -0.04 \ ATOM 21 CA HIS 5 5 86.284 132.365 -28.822 1.00 -0.04 \ ATOM 22 C HIS 5 5 85.503 133.162 -29.873 1.00 -0.04 \ ATOM 23 O HIS 5 5 85.971 133.351 -30.977 1.00 -0.04 \ ATOM 24 CB HIS 5 5 85.672 130.969 -28.701 1.00 -0.04 \ ATOM 25 CG HIS 5 5 85.897 130.146 -29.925 1.00 -0.04 \ ATOM 26 ND1 HIS 5 5 87.165 129.866 -30.389 1.00 -0.04 \ ATOM 27 CD2 HIS 5 5 85.042 129.610 -30.822 1.00 -0.04 \ ATOM 28 CE1 HIS 5 5 87.083 129.167 -31.510 1.00 -0.04 \ ATOM 29 NE2 HIS 5 5 85.807 128.995 -31.792 1.00 -0.04 \ ATOM 30 N LEU 5 6 84.305 133.584 -29.487 1.00 1.15 \ ATOM 31 CA LEU 5 6 83.425 134.417 -30.295 1.00 1.15 \ ATOM 32 C LEU 5 6 84.093 135.743 -30.589 1.00 1.15 \ ATOM 33 O LEU 5 6 84.064 136.219 -31.727 1.00 1.15 \ ATOM 34 CB LEU 5 6 82.091 134.688 -29.581 1.00 1.15 \ ATOM 35 CG LEU 5 6 81.193 133.533 -29.146 1.00 1.15 \ ATOM 36 CD1 LEU 5 6 80.063 134.087 -28.264 1.00 1.15 \ ATOM 37 CD2 LEU 5 6 80.670 132.702 -30.317 1.00 1.15 \ ATOM 38 N CYS 5 7 84.696 136.352 -29.574 1.00 1.70 \ ATOM 39 CA CYS 5 7 85.402 137.591 -29.769 1.00 1.70 \ ATOM 40 C CYS 5 7 86.440 137.427 -30.846 1.00 1.70 \ ATOM 41 O CYS 5 7 86.529 138.281 -31.728 1.00 1.70 \ ATOM 42 CB CYS 5 7 86.047 138.055 -28.473 1.00 1.70 \ ATOM 43 SG CYS 5 7 87.028 139.551 -28.629 1.00 1.70 \ ATOM 44 N GLY 5 8 87.240 136.351 -30.769 1.00 0.71 \ ATOM 45 CA GLY 5 8 88.289 136.065 -31.766 1.00 0.71 \ ATOM 46 C GLY 5 8 87.726 136.011 -33.192 1.00 0.71 \ ATOM 47 O GLY 5 8 88.357 136.492 -34.152 1.00 0.71 \ ATOM 48 N SER 5 9 86.523 135.467 -33.331 1.00 -0.48 \ ATOM 49 CA SER 5 9 85.815 135.440 -34.637 1.00 -0.48 \ ATOM 50 C SER 5 9 85.644 136.826 -35.180 1.00 -0.48 \ ATOM 51 O SER 5 9 85.810 137.096 -36.382 1.00 -0.48 \ ATOM 52 CB SER 5 9 84.447 134.800 -34.497 1.00 -0.48 \ ATOM 53 OG SER 5 9 83.941 134.574 -35.758 1.00 -0.48 \ ATOM 54 N HIS 5 10 85.290 137.730 -34.275 1.00 -0.23 \ ATOM 55 CA HIS 5 10 85.190 139.139 -34.617 1.00 -0.23 \ ATOM 56 C HIS 5 10 86.534 139.781 -34.944 1.00 -0.23 \ ATOM 57 O HIS 5 10 86.621 140.583 -35.880 1.00 -0.23 \ ATOM 58 CB HIS 5 10 84.436 139.902 -33.524 1.00 -0.23 \ ATOM 59 CG HIS 5 10 82.992 139.535 -33.451 1.00 -0.23 \ ATOM 60 ND1 HIS 5 10 82.043 140.152 -34.223 1.00 -0.23 \ ATOM 61 CD2 HIS 5 10 82.336 138.612 -32.720 1.00 -0.23 \ ATOM 62 CE1 HIS 5 10 80.865 139.621 -33.974 1.00 -0.23 \ ATOM 63 NE2 HIS 5 10 81.014 138.681 -33.066 1.00 -0.23 \ ATOM 64 N LEU 5 11 87.565 139.438 -34.184 1.00 1.70 \ ATOM 65 CA LEU 5 11 88.872 139.984 -34.362 1.00 1.70 \ ATOM 66 C LEU 5 11 89.452 139.656 -35.768 1.00 1.70 \ ATOM 67 O LEU 5 11 89.925 140.558 -36.442 1.00 1.70 \ ATOM 68 CB LEU 5 11 89.831 139.500 -33.260 1.00 1.70 \ ATOM 69 CG LEU 5 11 89.613 140.207 -31.919 1.00 1.70 \ ATOM 70 CD1 LEU 5 11 90.421 139.506 -30.866 1.00 1.70 \ ATOM 71 CD2 LEU 5 11 89.951 141.683 -31.969 1.00 1.70 \ ATOM 72 N VAL 5 12 89.364 138.401 -36.203 1.00 0.71 \ ATOM 73 CA VAL 5 12 89.925 138.029 -37.501 1.00 0.71 \ ATOM 74 C VAL 5 12 89.241 138.715 -38.680 1.00 0.71 \ ATOM 75 O VAL 5 12 89.876 139.051 -39.676 1.00 0.71 \ ATOM 76 CB VAL 5 12 90.038 136.506 -37.711 1.00 0.71 \ ATOM 77 CG1 VAL 5 12 90.948 135.924 -36.670 1.00 0.71 \ ATOM 78 CG2 VAL 5 12 88.691 135.801 -37.761 1.00 0.71 \ ATOM 79 N GLU 5 13 87.933 138.858 -38.565 1.00 0.66 \ ATOM 80 CA GLU 5 13 87.146 139.579 -39.528 1.00 0.66 \ ATOM 81 C GLU 5 13 87.599 141.061 -39.605 1.00 0.66 \ ATOM 82 O GLU 5 13 87.661 141.636 -40.676 1.00 0.66 \ ATOM 83 CB GLU 5 13 85.674 139.496 -39.127 1.00 0.66 \ ATOM 84 CG GLU 5 13 84.766 140.445 -39.887 1.00 0.66 \ ATOM 85 N ALA 5 14 87.874 141.663 -38.449 1.00 -0.00 \ ATOM 86 CA ALA 5 14 88.413 143.022 -38.389 1.00 -0.00 \ ATOM 87 C ALA 5 14 89.829 143.119 -39.031 1.00 -0.00 \ ATOM 88 O ALA 5 14 90.084 144.033 -39.791 1.00 -0.00 \ ATOM 89 CB ALA 5 14 88.435 143.540 -36.945 1.00 -0.00 \ ATOM 90 N LEU 5 15 90.701 142.170 -38.705 1.00 1.70 \ ATOM 91 CA LEU 5 15 92.057 142.108 -39.267 1.00 1.70 \ ATOM 92 C LEU 5 15 92.037 141.952 -40.755 1.00 1.70 \ ATOM 93 O LEU 5 15 92.804 142.608 -41.443 1.00 1.70 \ ATOM 94 CB LEU 5 15 92.873 140.941 -38.668 1.00 1.70 \ ATOM 95 CG LEU 5 15 93.112 141.000 -37.163 1.00 1.70 \ ATOM 96 CD1 LEU 5 15 94.029 139.861 -36.760 1.00 1.70 \ ATOM 97 CD2 LEU 5 15 93.711 142.349 -36.779 1.00 1.70 \ ATOM 98 N TYR 5 16 91.119 141.138 -41.268 1.00 -0.22 \ ATOM 99 CA TYR 5 16 90.979 140.950 -42.706 1.00 -0.22 \ ATOM 100 C TYR 5 16 90.800 142.346 -43.393 1.00 -0.22 \ ATOM 101 O TYR 5 16 91.523 142.688 -44.329 1.00 -0.22 \ ATOM 102 CB TYR 5 16 89.845 139.946 -43.019 1.00 -0.22 \ ATOM 103 CG TYR 5 16 89.425 139.975 -44.466 1.00 -0.22 \ ATOM 104 CD1 TYR 5 16 90.203 139.397 -45.445 1.00 -0.22 \ ATOM 105 CD2 TYR 5 16 88.312 140.693 -44.870 1.00 -0.22 \ ATOM 106 CE1 TYR 5 16 89.827 139.444 -46.793 1.00 -0.22 \ ATOM 107 CE2 TYR 5 16 87.927 140.760 -46.218 1.00 -0.22 \ ATOM 108 CZ TYR 5 16 88.695 140.138 -47.176 1.00 -0.22 \ ATOM 109 OH TYR 5 16 88.359 140.256 -48.531 1.00 -0.22 \ ATOM 110 N LEU 5 17 89.869 143.160 -42.916 1.00 -0.23 \ ATOM 111 CA LEU 5 17 89.645 144.478 -43.511 1.00 -0.23 \ ATOM 112 C LEU 5 17 90.812 145.463 -43.169 1.00 -0.23 \ ATOM 113 O LEU 5 17 91.237 146.244 -44.022 1.00 -0.23 \ ATOM 114 CB LEU 5 17 88.313 145.044 -43.056 1.00 -0.23 \ ATOM 115 CG LEU 5 17 87.025 144.380 -43.595 1.00 -0.23 \ ATOM 116 CD1 LEU 5 17 85.828 144.932 -42.844 1.00 -0.23 \ ATOM 117 CD2 LEU 5 17 86.826 144.555 -45.084 1.00 -0.23 \ ATOM 118 N VAL 5 18 91.320 145.410 -41.934 1.00 0.28 \ ATOM 119 CA VAL 5 18 92.379 146.339 -41.468 1.00 0.28 \ ATOM 120 C VAL 5 18 93.718 146.113 -42.198 1.00 0.28 \ ATOM 121 O VAL 5 18 94.347 147.045 -42.655 1.00 0.28 \ ATOM 122 CB VAL 5 18 92.567 146.216 -39.921 1.00 0.28 \ ATOM 123 CG1 VAL 5 18 93.915 146.738 -39.436 1.00 0.28 \ ATOM 124 CG2 VAL 5 18 91.433 146.891 -39.200 1.00 0.28 \ ATOM 125 N CYS 5 19 94.126 144.855 -42.302 1.00 1.70 \ ATOM 126 CA CYS 5 19 95.391 144.516 -42.909 1.00 1.70 \ ATOM 127 C CYS 5 19 95.414 144.451 -44.430 1.00 1.70 \ ATOM 128 O CYS 5 19 96.479 144.630 -45.009 1.00 1.70 \ ATOM 129 CB CYS 5 19 95.849 143.188 -42.345 1.00 1.70 \ ATOM 130 SG CYS 5 19 95.897 143.241 -40.529 1.00 1.70 \ ATOM 131 N GLY 5 20 94.288 144.126 -45.073 1.00 -0.16 \ ATOM 132 CA GLY 5 20 94.236 143.886 -46.533 1.00 -0.16 \ ATOM 133 C GLY 5 20 95.223 142.894 -47.171 1.00 -0.16 \ ATOM 134 O GLY 5 20 95.274 141.718 -46.810 1.00 -0.16 \ ATOM 135 N GLU 5 21 96.007 143.381 -48.133 1.00 0.19 \ ATOM 136 CA GLU 5 21 96.951 142.547 -48.866 1.00 0.19 \ ATOM 137 C GLU 5 21 98.109 142.044 -47.992 1.00 0.19 \ ATOM 138 O GLU 5 21 98.671 141.000 -48.272 1.00 0.19 \ ATOM 139 CB GLU 5 21 97.505 143.295 -50.091 1.00 0.19 \ ATOM 140 N ARG 5 22 98.473 142.770 -46.939 1.00 -0.61 \ ATOM 141 CA ARG 5 22 99.492 142.295 -46.032 1.00 -0.61 \ ATOM 142 C ARG 5 22 99.003 140.986 -45.422 1.00 -0.61 \ ATOM 143 O ARG 5 22 99.715 139.990 -45.355 1.00 -0.61 \ ATOM 144 CB ARG 5 22 99.741 143.318 -44.918 1.00 -0.61 \ ATOM 145 CG ARG 5 22 100.361 144.644 -45.361 1.00 -0.61 \ ATOM 146 CD ARG 5 22 100.369 145.654 -44.229 1.00 -0.61 \ ATOM 147 NE ARG 5 22 99.132 146.432 -44.160 1.00 -0.61 \ ATOM 148 CZ ARG 5 22 98.856 147.321 -43.204 1.00 -0.61 \ ATOM 149 NH1 ARG 5 22 99.719 147.549 -42.217 1.00 -0.61 \ ATOM 150 NH2 ARG 5 22 97.696 147.977 -43.221 1.00 -0.61 \ ATOM 151 N GLY 5 23 97.750 141.002 -44.991 1.00 1.70 \ ATOM 152 CA GLY 5 23 97.206 139.890 -44.266 1.00 1.70 \ ATOM 153 C GLY 5 23 97.677 139.968 -42.846 1.00 1.70 \ ATOM 154 O GLY 5 23 98.113 141.049 -42.383 1.00 1.70 \ ATOM 155 N PHE 5 24 97.602 138.832 -42.152 1.00 1.13 \ ATOM 156 CA PHE 5 24 97.821 138.820 -40.697 1.00 1.13 \ ATOM 157 C PHE 5 24 98.104 137.417 -40.207 1.00 1.13 \ ATOM 158 O PHE 5 24 97.782 136.444 -40.887 1.00 1.13 \ ATOM 159 CB PHE 5 24 96.577 139.428 -39.956 1.00 1.13 \ ATOM 160 CG PHE 5 24 95.288 138.657 -40.194 1.00 1.13 \ ATOM 161 CD1 PHE 5 24 94.967 137.538 -39.416 1.00 1.13 \ ATOM 162 CD2 PHE 5 24 94.461 138.979 -41.239 1.00 1.13 \ ATOM 163 CE1 PHE 5 24 93.808 136.812 -39.656 1.00 1.13 \ ATOM 164 CE2 PHE 5 24 93.286 138.256 -41.467 1.00 1.13 \ ATOM 165 CZ PHE 5 24 92.979 137.159 -40.687 1.00 1.13 \ ATOM 166 N PHE 5 25 98.716 137.344 -39.014 1.00 0.52 \ ATOM 167 CA PHE 5 25 98.850 136.105 -38.252 1.00 0.52 \ ATOM 168 C PHE 5 25 97.899 136.146 -37.065 1.00 0.52 \ ATOM 169 O PHE 5 25 97.846 137.122 -36.327 1.00 0.52 \ ATOM 170 CB PHE 5 25 100.286 135.886 -37.763 1.00 0.52 \ ATOM 171 CG PHE 5 25 100.928 134.612 -38.286 1.00 0.52 \ ATOM 172 CD1 PHE 5 25 100.625 133.369 -37.724 1.00 0.52 \ ATOM 173 CD2 PHE 5 25 101.862 134.660 -39.340 1.00 0.52 \ ATOM 174 CE1 PHE 5 25 101.237 132.210 -38.201 1.00 0.52 \ ATOM 175 CE2 PHE 5 25 102.475 133.502 -39.810 1.00 0.52 \ ATOM 176 CZ PHE 5 25 102.159 132.278 -39.239 1.00 0.52 \ ATOM 177 N TYR 5 26 97.131 135.084 -36.890 1.00 -0.24 \ ATOM 178 CA TYR 5 26 96.214 135.002 -35.774 1.00 -0.24 \ ATOM 179 C TYR 5 26 96.759 133.900 -34.889 1.00 -0.24 \ ATOM 180 O TYR 5 26 96.753 132.725 -35.292 1.00 -0.24 \ ATOM 181 CB TYR 5 26 94.778 134.706 -36.224 1.00 -0.24 \ ATOM 182 CG TYR 5 26 93.854 134.658 -35.049 1.00 -0.24 \ ATOM 183 CD1 TYR 5 26 93.560 135.816 -34.345 1.00 -0.24 \ ATOM 184 CD2 TYR 5 26 93.331 133.442 -34.573 1.00 -0.24 \ ATOM 185 CE1 TYR 5 26 92.752 135.778 -33.230 1.00 -0.24 \ ATOM 186 CE2 TYR 5 26 92.513 133.396 -33.437 1.00 -0.24 \ ATOM 187 CZ TYR 5 26 92.217 134.557 -32.789 1.00 -0.24 \ ATOM 188 OH TYR 5 26 91.402 134.572 -31.667 1.00 -0.24 \ ATOM 189 N THR 5 27 97.261 134.303 -33.715 1.00 -0.98 \ ATOM 190 CA THR 5 27 97.789 133.394 -32.683 1.00 -0.98 \ ATOM 191 C THR 5 27 96.872 133.548 -31.451 1.00 -0.98 \ ATOM 192 O THR 5 27 96.887 134.589 -30.791 1.00 -0.98 \ ATOM 193 CB THR 5 27 99.283 133.695 -32.311 1.00 -0.98 \ ATOM 194 OG1 THR 5 27 99.368 134.731 -31.323 1.00 -0.98 \ ATOM 195 CG2 THR 5 27 100.115 134.115 -33.526 1.00 -0.98 \ ATOM 196 N PRO 5 28 96.037 132.544 -31.161 1.00 -0.79 \ ATOM 197 CA PRO 5 28 95.193 132.628 -29.957 1.00 -0.79 \ ATOM 198 C PRO 5 28 95.957 132.445 -28.628 1.00 -0.79 \ ATOM 199 O PRO 5 28 95.503 132.980 -27.607 1.00 -0.79 \ ATOM 200 CB PRO 5 28 94.195 131.480 -30.156 1.00 -0.79 \ ATOM 201 CG PRO 5 28 94.971 130.471 -30.938 1.00 -0.79 \ ATOM 202 CD PRO 5 28 95.864 131.257 -31.855 1.00 -0.79 \ ATOM 203 N LYS 5 29 97.079 131.702 -28.644 1.00 -0.90 \ ATOM 204 CA LYS 5 29 97.845 131.371 -27.426 1.00 -0.90 \ ATOM 205 C LYS 5 29 99.350 131.342 -27.666 1.00 -0.90 \ ATOM 206 O LYS 5 29 100.011 132.383 -27.630 1.00 -0.90 \ """, "e5mam51_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mam51_csv", state=0, origin=1) cmd.zoom("e5mam51_csv", animate=-1)