cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 89.151 139.306 -18.709 1.00 -1.00 \ ATOM 2 CA PHE D 1 89.719 139.640 -17.364 1.00 -1.00 \ ATOM 3 C PHE D 1 88.901 140.654 -16.506 1.00 -1.00 \ ATOM 4 O PHE D 1 89.442 141.206 -15.534 1.00 -1.00 \ ATOM 5 CB PHE D 1 91.180 140.104 -17.509 1.00 -1.00 \ ATOM 6 N VAL D 2 87.629 140.898 -16.859 1.00 -1.00 \ ATOM 7 CA VAL D 2 86.667 141.646 -15.993 1.00 -1.00 \ ATOM 8 C VAL D 2 85.601 140.683 -15.455 1.00 -1.00 \ ATOM 9 O VAL D 2 85.285 140.688 -14.267 1.00 -1.00 \ ATOM 10 CB VAL D 2 86.010 142.899 -16.678 1.00 -1.00 \ ATOM 11 CG1 VAL D 2 85.643 142.668 -18.153 1.00 -1.00 \ ATOM 12 CG2 VAL D 2 84.791 143.400 -15.892 1.00 -1.00 \ ATOM 13 N ASN D 3 85.071 139.850 -16.340 1.00 -0.47 \ ATOM 14 CA ASN D 3 84.231 138.723 -15.960 1.00 -0.47 \ ATOM 15 C ASN D 3 85.074 137.769 -15.116 1.00 -0.47 \ ATOM 16 O ASN D 3 84.548 137.110 -14.233 1.00 -0.47 \ ATOM 17 CB ASN D 3 83.672 137.984 -17.195 1.00 -0.47 \ ATOM 18 CG ASN D 3 83.429 138.910 -18.390 1.00 -0.47 \ ATOM 19 OD1 ASN D 3 84.315 139.085 -19.246 1.00 -0.47 \ ATOM 20 ND2 ASN D 3 82.257 139.538 -18.430 1.00 -0.47 \ ATOM 21 N GLN D 4 86.379 137.706 -15.388 1.00 0.23 \ ATOM 22 CA GLN D 4 87.287 136.848 -14.633 1.00 0.23 \ ATOM 23 C GLN D 4 87.607 137.398 -13.263 1.00 0.23 \ ATOM 24 O GLN D 4 87.809 136.626 -12.324 1.00 0.23 \ ATOM 25 CB GLN D 4 88.630 136.680 -15.343 1.00 0.23 \ ATOM 26 CG GLN D 4 88.577 136.090 -16.736 1.00 0.23 \ ATOM 27 CD GLN D 4 89.939 135.693 -17.288 1.00 0.23 \ ATOM 28 OE1 GLN D 4 90.008 134.767 -18.085 1.00 0.23 \ ATOM 29 NE2 GLN D 4 91.021 136.393 -16.892 1.00 0.23 \ ATOM 30 N HIS D 5 87.752 138.718 -13.163 1.00 -0.04 \ ATOM 31 CA HIS D 5 88.025 139.363 -11.860 1.00 -0.04 \ ATOM 32 C HIS D 5 86.879 139.041 -10.883 1.00 -0.04 \ ATOM 33 O HIS D 5 87.110 138.554 -9.767 1.00 -0.04 \ ATOM 34 CB HIS D 5 88.177 140.866 -12.049 1.00 -0.04 \ ATOM 35 CG HIS D 5 88.677 141.586 -10.842 1.00 -0.04 \ ATOM 36 ND1 HIS D 5 89.975 141.481 -10.399 1.00 -0.04 \ ATOM 37 CD2 HIS D 5 88.063 142.452 -10.007 1.00 -0.04 \ ATOM 38 CE1 HIS D 5 90.135 142.228 -9.323 1.00 -0.04 \ ATOM 39 NE2 HIS D 5 88.988 142.833 -9.069 1.00 -0.04 \ ATOM 40 N LEU D 6 85.651 139.259 -11.356 1.00 1.15 \ ATOM 41 CA LEU D 6 84.426 138.939 -10.622 1.00 1.15 \ ATOM 42 C LEU D 6 84.427 137.465 -10.213 1.00 1.15 \ ATOM 43 O LEU D 6 84.229 137.139 -9.030 1.00 1.15 \ ATOM 44 CB LEU D 6 83.166 139.279 -11.437 1.00 1.15 \ ATOM 45 CG LEU D 6 82.877 140.744 -11.819 1.00 1.15 \ ATOM 46 CD1 LEU D 6 81.501 140.913 -12.468 1.00 1.15 \ ATOM 47 CD2 LEU D 6 83.036 141.718 -10.651 1.00 1.15 \ ATOM 48 N CYS D 7 84.697 136.597 -11.187 1.00 1.70 \ ATOM 49 CA CYS D 7 84.896 135.167 -10.969 1.00 1.70 \ ATOM 50 C CYS D 7 85.990 134.854 -9.957 1.00 1.70 \ ATOM 51 O CYS D 7 85.888 133.893 -9.195 1.00 1.70 \ ATOM 52 CB CYS D 7 85.190 134.468 -12.308 1.00 1.70 \ ATOM 53 SG CYS D 7 85.496 132.683 -12.212 1.00 1.70 \ ATOM 54 N GLY D 8 87.051 135.643 -9.955 1.00 0.71 \ ATOM 55 CA GLY D 8 88.088 135.492 -8.948 1.00 0.71 \ ATOM 56 C GLY D 8 87.589 135.694 -7.510 1.00 0.71 \ ATOM 57 O GLY D 8 88.079 135.050 -6.579 1.00 0.71 \ ATOM 58 N SER D 9 86.635 136.606 -7.356 1.00 -0.48 \ ATOM 59 CA SER D 9 86.032 136.924 -6.080 1.00 -0.48 \ ATOM 60 C SER D 9 85.305 135.680 -5.593 1.00 -0.48 \ ATOM 61 O SER D 9 85.486 135.279 -4.450 1.00 -0.48 \ ATOM 62 CB SER D 9 85.071 138.125 -6.220 1.00 -0.48 \ ATOM 63 OG SER D 9 84.602 138.555 -4.973 1.00 -0.48 \ ATOM 64 N HIS D 10 84.510 135.063 -6.474 1.00 -0.23 \ ATOM 65 CA HIS D 10 83.862 133.777 -6.173 1.00 -0.23 \ ATOM 66 C HIS D 10 84.855 132.618 -5.876 1.00 -0.23 \ ATOM 67 O HIS D 10 84.607 131.788 -4.985 1.00 -0.23 \ ATOM 68 CB HIS D 10 82.896 133.358 -7.314 1.00 -0.23 \ ATOM 69 CG HIS D 10 81.703 134.251 -7.452 1.00 -0.23 \ ATOM 70 ND1 HIS D 10 80.522 134.014 -6.796 1.00 -0.23 \ ATOM 71 CD2 HIS D 10 81.516 135.394 -8.156 1.00 -0.23 \ ATOM 72 CE1 HIS D 10 79.667 134.985 -7.064 1.00 -0.23 \ ATOM 73 NE2 HIS D 10 80.244 135.836 -7.891 1.00 -0.23 \ ATOM 74 N LEU D 11 85.962 132.538 -6.616 1.00 1.70 \ ATOM 75 CA LEU D 11 86.897 131.424 -6.408 1.00 1.70 \ ATOM 76 C LEU D 11 87.564 131.470 -5.050 1.00 1.70 \ ATOM 77 O LEU D 11 87.602 130.455 -4.368 1.00 1.70 \ ATOM 78 CB LEU D 11 87.960 131.394 -7.470 1.00 1.70 \ ATOM 79 CG LEU D 11 87.459 131.040 -8.861 1.00 1.70 \ ATOM 80 CD1 LEU D 11 88.564 131.402 -9.823 1.00 1.70 \ ATOM 81 CD2 LEU D 11 87.096 129.573 -9.004 1.00 1.70 \ ATOM 82 N VAL D 12 88.069 132.624 -4.631 1.00 0.71 \ ATOM 83 CA VAL D 12 88.816 132.685 -3.352 1.00 0.71 \ ATOM 84 C VAL D 12 87.861 132.424 -2.182 1.00 0.71 \ ATOM 85 O VAL D 12 88.287 131.919 -1.125 1.00 0.71 \ ATOM 86 CB VAL D 12 89.635 133.983 -3.165 1.00 0.71 \ ATOM 87 CG1 VAL D 12 90.623 134.200 -4.324 1.00 0.71 \ ATOM 88 CG2 VAL D 12 88.745 135.206 -3.020 1.00 0.71 \ ATOM 89 N GLU D 13 86.571 132.741 -2.380 1.00 0.66 \ ATOM 90 CA GLU D 13 85.536 132.401 -1.406 1.00 0.66 \ ATOM 91 C GLU D 13 85.264 130.937 -1.376 1.00 0.66 \ ATOM 92 O GLU D 13 85.078 130.402 -0.303 1.00 0.66 \ ATOM 93 CB GLU D 13 84.254 133.179 -1.680 1.00 0.66 \ ATOM 94 CG GLU D 13 83.154 132.929 -0.673 1.00 0.66 \ ATOM 95 CD GLU D 13 82.034 133.966 -0.730 1.00 0.66 \ ATOM 96 OE1 GLU D 13 82.182 135.004 -1.438 1.00 0.66 \ ATOM 97 OE2 GLU D 13 80.997 133.738 -0.045 1.00 0.66 \ ATOM 98 N ALA D 14 85.217 130.284 -2.551 1.00 -0.02 \ ATOM 99 CA ALA D 14 85.102 128.829 -2.612 1.00 -0.02 \ ATOM 100 C ALA D 14 86.335 128.121 -1.961 1.00 -0.02 \ ATOM 101 O ALA D 14 86.185 127.201 -1.153 1.00 -0.02 \ ATOM 102 CB ALA D 14 84.937 128.380 -4.047 1.00 -0.02 \ ATOM 103 N LEU D 15 87.533 128.578 -2.303 1.00 1.70 \ ATOM 104 CA LEU D 15 88.766 128.066 -1.713 1.00 1.70 \ ATOM 105 C LEU D 15 88.801 128.303 -0.180 1.00 1.70 \ ATOM 106 O LEU D 15 89.271 127.453 0.574 1.00 1.70 \ ATOM 107 CB LEU D 15 89.986 128.728 -2.386 1.00 1.70 \ ATOM 108 CG LEU D 15 90.282 128.470 -3.864 1.00 1.70 \ ATOM 109 CD1 LEU D 15 91.522 129.218 -4.255 1.00 1.70 \ ATOM 110 CD2 LEU D 15 90.500 126.991 -4.115 1.00 1.70 \ ATOM 111 N TYR D 16 88.313 129.444 0.298 1.00 -0.22 \ ATOM 112 CA TYR D 16 88.272 129.683 1.762 1.00 -0.22 \ ATOM 113 C TYR D 16 87.570 128.562 2.473 1.00 -0.22 \ ATOM 114 O TYR D 16 88.060 128.088 3.483 1.00 -0.22 \ ATOM 115 CB TYR D 16 87.599 131.012 2.131 1.00 -0.22 \ ATOM 116 CG TYR D 16 87.263 131.149 3.624 1.00 -0.22 \ ATOM 117 CD1 TYR D 16 88.211 131.600 4.543 1.00 -0.22 \ ATOM 118 CD2 TYR D 16 86.006 130.823 4.108 1.00 -0.22 \ ATOM 119 CE1 TYR D 16 87.899 131.742 5.890 1.00 -0.22 \ ATOM 120 CE2 TYR D 16 85.702 130.926 5.464 1.00 -0.22 \ ATOM 121 CZ TYR D 16 86.661 131.384 6.347 1.00 -0.22 \ ATOM 122 OH TYR D 16 86.346 131.531 7.695 1.00 -0.22 \ ATOM 123 N LEU D 17 86.419 128.162 1.941 1.00 -0.23 \ ATOM 124 CA LEU D 17 85.602 127.077 2.477 1.00 -0.23 \ ATOM 125 C LEU D 17 86.130 125.633 2.204 1.00 -0.23 \ ATOM 126 O LEU D 17 86.013 124.753 3.060 1.00 -0.23 \ ATOM 127 CB LEU D 17 84.153 127.202 1.965 1.00 -0.23 \ ATOM 128 CG LEU D 17 83.263 128.329 2.481 1.00 -0.23 \ ATOM 129 CD1 LEU D 17 81.829 128.204 1.943 1.00 -0.23 \ ATOM 130 CD2 LEU D 17 83.231 128.341 4.000 1.00 -0.23 \ ATOM 131 N VAL D 18 86.649 125.397 1.011 1.00 0.26 \ ATOM 132 CA VAL D 18 87.152 124.083 0.609 1.00 0.26 \ ATOM 133 C VAL D 18 88.413 123.662 1.373 1.00 0.26 \ ATOM 134 O VAL D 18 88.563 122.477 1.718 1.00 0.26 \ ATOM 135 CB VAL D 18 87.445 124.059 -0.914 1.00 0.26 \ ATOM 136 CG1 VAL D 18 88.232 122.816 -1.336 1.00 0.26 \ ATOM 137 CG2 VAL D 18 86.158 124.114 -1.698 1.00 0.26 \ ATOM 138 N CYS D 19 89.325 124.613 1.595 1.00 1.70 \ ATOM 139 CA CYS D 19 90.642 124.319 2.138 1.00 1.70 \ ATOM 140 C CYS D 19 90.667 124.265 3.669 1.00 1.70 \ ATOM 141 O CYS D 19 91.323 123.388 4.263 1.00 1.70 \ ATOM 142 CB CYS D 19 91.659 125.314 1.581 1.00 1.70 \ ATOM 143 SG CYS D 19 91.717 125.344 -0.243 1.00 1.70 \ ATOM 144 N GLY D 20 89.937 125.176 4.301 1.00 -0.16 \ ATOM 145 CA GLY D 20 89.815 125.203 5.761 1.00 -0.16 \ ATOM 146 C GLY D 20 91.115 125.658 6.396 1.00 -0.16 \ ATOM 147 O GLY D 20 91.665 126.696 6.000 1.00 -0.16 \ ATOM 148 N GLU D 21 91.613 124.867 7.353 1.00 0.19 \ ATOM 149 CA GLU D 21 92.839 125.198 8.093 1.00 0.19 \ ATOM 150 C GLU D 21 94.128 125.173 7.245 1.00 0.19 \ ATOM 151 O GLU D 21 95.092 125.857 7.588 1.00 0.19 \ ATOM 152 CB GLU D 21 92.991 124.295 9.330 1.00 0.19 \ ATOM 153 N ARG D 22 94.147 124.415 6.154 0.50 -0.61 \ ATOM 154 CA ARG D 22 95.293 124.412 5.254 0.50 -0.61 \ ATOM 155 C ARG D 22 95.489 125.755 4.546 0.50 -0.61 \ ATOM 156 O ARG D 22 96.626 126.189 4.346 0.50 -0.61 \ ATOM 157 CB ARG D 22 95.128 123.298 4.236 0.50 -0.61 \ ATOM 158 CG ARG D 22 94.636 122.004 4.856 0.50 -0.61 \ ATOM 159 CD ARG D 22 94.254 120.996 3.790 0.50 -0.61 \ ATOM 160 NE ARG D 22 92.841 121.039 3.433 0.50 -0.61 \ ATOM 161 CZ ARG D 22 92.332 120.523 2.313 0.50 -0.61 \ ATOM 162 NH1 ARG D 22 93.112 119.932 1.414 0.50 -0.61 \ ATOM 163 NH2 ARG D 22 91.033 120.613 2.095 0.50 -0.61 \ ATOM 164 N GLY D 23 94.389 126.413 4.167 1.00 1.70 \ ATOM 165 CA GLY D 23 94.468 127.691 3.456 1.00 1.70 \ ATOM 166 C GLY D 23 94.797 127.427 2.001 1.00 1.70 \ ATOM 167 O GLY D 23 94.824 126.280 1.580 1.00 1.70 \ ATOM 168 N PHE D 24 95.037 128.468 1.224 1.00 1.13 \ ATOM 169 CA PHE D 24 95.222 128.319 -0.225 1.00 1.13 \ ATOM 170 C PHE D 24 96.125 129.383 -0.780 1.00 1.13 \ ATOM 171 O PHE D 24 96.612 130.275 -0.049 1.00 1.13 \ ATOM 172 CB PHE D 24 93.854 128.405 -0.941 1.00 1.13 \ ATOM 173 CG PHE D 24 93.138 129.713 -0.744 1.00 1.13 \ ATOM 174 CD1 PHE D 24 92.299 129.894 0.335 1.00 1.13 \ ATOM 175 CD2 PHE D 24 93.301 130.755 -1.630 1.00 1.13 \ ATOM 176 CE1 PHE D 24 91.617 131.085 0.517 1.00 1.13 \ ATOM 177 CE2 PHE D 24 92.650 131.967 -1.433 1.00 1.13 \ ATOM 178 CZ PHE D 24 91.787 132.127 -0.368 1.00 1.13 \ ATOM 179 N PHE D 25 96.356 129.276 -2.085 1.00 0.51 \ ATOM 180 CA PHE D 25 97.022 130.306 -2.852 1.00 0.51 \ ATOM 181 C PHE D 25 96.131 130.564 -4.021 1.00 0.51 \ ATOM 182 O PHE D 25 95.506 129.635 -4.522 1.00 0.51 \ ATOM 183 CB PHE D 25 98.442 129.890 -3.352 1.00 0.51 \ ATOM 184 CG PHE D 25 98.489 128.545 -4.056 1.00 0.51 \ ATOM 185 CD1 PHE D 25 98.529 127.373 -3.330 1.00 0.51 \ ATOM 186 CD2 PHE D 25 98.451 128.463 -5.440 1.00 0.51 \ ATOM 187 CE1 PHE D 25 98.559 126.138 -3.967 1.00 0.51 \ ATOM 188 CE2 PHE D 25 98.440 127.225 -6.080 1.00 0.51 \ ATOM 189 CZ PHE D 25 98.500 126.070 -5.346 1.00 0.51 \ ATOM 190 N TYR D 26 96.091 131.833 -4.419 1.00 -0.25 \ ATOM 191 CA TYR D 26 95.348 132.316 -5.546 1.00 -0.25 \ ATOM 192 C TYR D 26 96.341 133.139 -6.379 1.00 -0.25 \ ATOM 193 O TYR D 26 97.084 133.930 -5.813 1.00 -0.25 \ ATOM 194 CB TYR D 26 94.173 133.204 -5.067 1.00 -0.25 \ ATOM 195 CG TYR D 26 93.478 133.841 -6.242 1.00 -0.25 \ ATOM 196 CD1 TYR D 26 92.575 133.120 -7.003 1.00 -0.25 \ ATOM 197 CD2 TYR D 26 93.765 135.156 -6.623 1.00 -0.25 \ ATOM 198 CE1 TYR D 26 91.962 133.705 -8.088 1.00 -0.25 \ ATOM 199 CE2 TYR D 26 93.171 135.727 -7.716 1.00 -0.25 \ ATOM 200 CZ TYR D 26 92.285 134.998 -8.449 1.00 -0.25 \ ATOM 201 OH TYR D 26 91.699 135.563 -9.539 1.00 -0.25 \ ATOM 202 N THR D 27 96.331 132.959 -7.704 1.00 -0.98 \ ATOM 203 CA THR D 27 97.253 133.664 -8.620 1.00 -0.98 \ ATOM 204 C THR D 27 96.890 133.601 -10.108 1.00 -0.98 \ ATOM 205 O THR D 27 97.110 132.572 -10.747 1.00 -0.98 \ ATOM 206 CB THR D 27 98.673 133.074 -8.541 1.00 -0.98 \ ATOM 207 OG1 THR D 27 98.590 131.664 -8.305 1.00 -0.98 \ ATOM 208 N PRO D 28 96.396 134.709 -10.683 1.00 -0.79 \ ATOM 209 CA PRO D 28 96.238 134.749 -12.165 1.00 -0.79 \ ATOM 210 C PRO D 28 97.582 134.753 -12.923 1.00 -0.79 \ ATOM 211 O PRO D 28 97.644 135.022 -14.139 1.00 -0.79 \ ATOM 212 CB PRO D 28 95.458 136.055 -12.421 1.00 -0.79 \ ATOM 213 CG PRO D 28 95.129 136.633 -11.072 1.00 -0.79 \ ATOM 214 CD PRO D 28 96.017 135.982 -10.044 1.00 -0.79 \ """, "e5mamD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mamD1_csv", state=0, origin=1) cmd.zoom("e5mamD1_csv", animate=-1)