cmd.read_pdbstr("""\ ATOM 1 N HIS V 5 109.364 116.040 -28.894 1.00 -0.05 \ ATOM 2 CA HIS V 5 109.896 116.845 -27.768 1.00 -0.05 \ ATOM 3 C HIS V 5 110.578 115.988 -26.683 1.00 -0.05 \ ATOM 4 O HIS V 5 111.735 116.218 -26.383 1.00 -0.05 \ ATOM 5 CB HIS V 5 108.818 117.787 -27.165 1.00 -0.05 \ ATOM 6 CG HIS V 5 109.082 119.245 -27.426 1.00 -0.05 \ ATOM 7 ND1 HIS V 5 110.287 119.846 -27.120 1.00 -0.05 \ ATOM 8 CD2 HIS V 5 108.309 120.217 -27.972 1.00 -0.05 \ ATOM 9 CE1 HIS V 5 110.249 121.120 -27.473 1.00 -0.05 \ ATOM 10 NE2 HIS V 5 109.059 121.372 -27.990 1.00 -0.05 \ ATOM 11 N LEU V 6 109.882 114.995 -26.146 1.00 1.15 \ ATOM 12 CA LEU V 6 110.327 114.249 -24.935 1.00 1.15 \ ATOM 13 C LEU V 6 110.726 112.776 -25.193 1.00 1.15 \ ATOM 14 O LEU V 6 109.869 111.920 -25.368 1.00 1.15 \ ATOM 15 CB LEU V 6 109.239 114.302 -23.846 1.00 1.15 \ ATOM 16 CG LEU V 6 108.966 115.653 -23.176 1.00 1.15 \ ATOM 17 CD1 LEU V 6 107.602 115.639 -22.511 1.00 1.15 \ ATOM 18 CD2 LEU V 6 110.036 115.977 -22.151 1.00 1.15 \ ATOM 19 N CYS V 7 112.023 112.502 -25.186 1.00 1.70 \ ATOM 20 CA CYS V 7 112.551 111.187 -25.501 1.00 1.70 \ ATOM 21 C CYS V 7 113.596 110.758 -24.449 1.00 1.70 \ ATOM 22 O CYS V 7 114.069 111.575 -23.652 1.00 1.70 \ ATOM 23 CB CYS V 7 113.176 111.210 -26.895 1.00 1.70 \ ATOM 24 SG CYS V 7 112.070 111.790 -28.213 1.00 1.70 \ ATOM 25 N GLY V 8 113.904 109.460 -24.426 1.00 0.71 \ ATOM 26 CA GLY V 8 114.912 108.875 -23.520 1.00 0.71 \ ATOM 27 C GLY V 8 114.667 109.197 -22.070 1.00 0.71 \ ATOM 28 O GLY V 8 113.530 109.218 -21.636 1.00 0.71 \ ATOM 29 N SER V 9 115.720 109.517 -21.330 1.00 -0.48 \ ATOM 30 CA SER V 9 115.581 109.878 -19.908 1.00 -0.48 \ ATOM 31 C SER V 9 114.783 111.169 -19.635 1.00 -0.48 \ ATOM 32 O SER V 9 114.355 111.406 -18.505 1.00 -0.48 \ ATOM 33 CB SER V 9 116.972 110.006 -19.262 1.00 -0.48 \ ATOM 34 OG SER V 9 117.704 111.040 -19.885 1.00 -0.48 \ ATOM 35 N HIS V 10 114.610 112.023 -20.649 1.00 -0.23 \ ATOM 36 CA HIS V 10 113.824 113.247 -20.503 1.00 -0.23 \ ATOM 37 C HIS V 10 112.342 112.802 -20.361 1.00 -0.23 \ ATOM 38 O HIS V 10 111.623 113.356 -19.548 1.00 -0.23 \ ATOM 39 CB HIS V 10 114.055 114.236 -21.681 1.00 -0.23 \ ATOM 40 CG HIS V 10 115.494 114.668 -21.836 1.00 -0.23 \ ATOM 41 ND1 HIS V 10 116.159 115.353 -20.849 1.00 -0.23 \ ATOM 42 CD2 HIS V 10 116.392 114.493 -22.837 1.00 -0.23 \ ATOM 43 CE1 HIS V 10 117.409 115.577 -21.227 1.00 -0.23 \ ATOM 44 NE2 HIS V 10 117.581 115.060 -22.425 1.00 -0.23 \ ATOM 45 N LEU V 11 111.914 111.765 -21.094 1.00 1.70 \ ATOM 46 CA LEU V 11 110.566 111.279 -20.950 1.00 1.70 \ ATOM 47 C LEU V 11 110.358 110.713 -19.537 1.00 1.70 \ ATOM 48 O LEU V 11 109.424 111.096 -18.856 1.00 1.70 \ ATOM 49 CB LEU V 11 110.234 110.287 -22.041 1.00 1.70 \ ATOM 50 CG LEU V 11 108.811 109.716 -22.013 1.00 1.70 \ ATOM 51 CD1 LEU V 11 107.773 110.809 -22.154 1.00 1.70 \ ATOM 52 CD2 LEU V 11 108.675 108.676 -23.105 1.00 1.70 \ ATOM 53 N VAL V 12 111.292 109.901 -19.049 1.00 0.71 \ ATOM 54 CA VAL V 12 111.158 109.332 -17.728 1.00 0.71 \ ATOM 55 C VAL V 12 111.134 110.443 -16.703 1.00 0.71 \ ATOM 56 O VAL V 12 110.432 110.328 -15.679 1.00 0.71 \ ATOM 57 CB VAL V 12 112.281 108.294 -17.460 1.00 0.71 \ ATOM 58 CG1 VAL V 12 112.382 107.913 -16.001 1.00 0.71 \ ATOM 59 CG2 VAL V 12 112.005 107.046 -18.290 1.00 0.71 \ ATOM 60 N GLU V 13 111.904 111.516 -16.937 1.00 0.66 \ ATOM 61 CA GLU V 13 111.867 112.640 -15.997 1.00 0.66 \ ATOM 62 C GLU V 13 110.540 113.406 -16.062 1.00 0.66 \ ATOM 63 O GLU V 13 110.058 113.888 -15.043 1.00 0.66 \ ATOM 64 CB GLU V 13 113.083 113.618 -16.138 1.00 0.66 \ ATOM 65 CG GLU V 13 114.258 113.331 -15.187 1.00 0.66 \ ATOM 66 CD GLU V 13 113.858 113.032 -13.698 1.00 0.66 \ ATOM 67 OE1 GLU V 13 113.295 113.944 -12.989 1.00 0.66 \ ATOM 68 OE2 GLU V 13 114.137 111.870 -13.235 1.00 0.66 \ ATOM 69 N ALA V 14 109.970 113.547 -17.245 1.00 -0.00 \ ATOM 70 CA ALA V 14 108.631 114.127 -17.364 1.00 -0.00 \ ATOM 71 C ALA V 14 107.615 113.257 -16.612 1.00 -0.00 \ ATOM 72 O ALA V 14 106.761 113.798 -15.880 1.00 -0.00 \ ATOM 73 CB ALA V 14 108.235 114.303 -18.819 1.00 -0.00 \ ATOM 74 N LEU V 15 107.720 111.933 -16.741 1.00 1.70 \ ATOM 75 CA LEU V 15 106.759 111.038 -16.005 1.00 1.70 \ ATOM 76 C LEU V 15 106.857 111.187 -14.502 1.00 1.70 \ ATOM 77 O LEU V 15 105.839 111.258 -13.828 1.00 1.70 \ ATOM 78 CB LEU V 15 106.945 109.549 -16.347 1.00 1.70 \ ATOM 79 CG LEU V 15 106.378 109.124 -17.701 1.00 1.70 \ ATOM 80 CD1 LEU V 15 106.845 107.722 -18.038 1.00 1.70 \ ATOM 81 CD2 LEU V 15 104.875 109.192 -17.722 1.00 1.70 \ ATOM 82 N TYR V 16 108.082 111.215 -13.976 1.00 -0.22 \ ATOM 83 CA TYR V 16 108.315 111.444 -12.538 1.00 -0.22 \ ATOM 84 C TYR V 16 107.726 112.753 -12.042 1.00 -0.22 \ ATOM 85 O TYR V 16 107.193 112.823 -10.956 1.00 -0.22 \ ATOM 86 CB TYR V 16 109.827 111.439 -12.207 1.00 -0.22 \ ATOM 87 CG TYR V 16 110.089 111.434 -10.724 1.00 -0.22 \ ATOM 88 CD1 TYR V 16 109.985 110.280 -10.018 1.00 -0.22 \ ATOM 89 CD2 TYR V 16 110.333 112.614 -10.021 1.00 -0.22 \ ATOM 90 CE1 TYR V 16 110.138 110.265 -8.635 1.00 -0.22 \ ATOM 91 CE2 TYR V 16 110.576 112.589 -8.664 1.00 -0.22 \ ATOM 92 CZ TYR V 16 110.461 111.392 -7.976 1.00 -0.22 \ ATOM 93 OH TYR V 16 110.620 111.335 -6.614 1.00 -0.22 \ ATOM 94 N LEU V 17 107.860 113.801 -12.833 1.00 -0.23 \ ATOM 95 CA LEU V 17 107.334 115.117 -12.479 1.00 -0.23 \ ATOM 96 C LEU V 17 105.799 115.103 -12.338 1.00 -0.23 \ ATOM 97 O LEU V 17 105.231 115.619 -11.374 1.00 -0.23 \ ATOM 98 CB LEU V 17 107.762 116.132 -13.567 1.00 -0.23 \ ATOM 99 CG LEU V 17 107.183 117.548 -13.444 1.00 -0.23 \ ATOM 100 CD1 LEU V 17 108.125 118.451 -12.668 1.00 -0.23 \ ATOM 101 CD2 LEU V 17 106.852 118.152 -14.815 1.00 -0.23 \ ATOM 102 N VAL V 18 105.157 114.498 -13.327 1.00 0.28 \ ATOM 103 CA VAL V 18 103.715 114.615 -13.517 1.00 0.28 \ ATOM 104 C VAL V 18 102.961 113.871 -12.441 1.00 0.28 \ ATOM 105 O VAL V 18 102.144 114.447 -11.717 1.00 0.28 \ ATOM 106 CB VAL V 18 103.309 114.110 -14.918 1.00 0.28 \ ATOM 107 CG1 VAL V 18 101.809 113.846 -15.005 1.00 0.28 \ ATOM 108 CG2 VAL V 18 103.730 115.136 -15.964 1.00 0.28 \ ATOM 109 N CYS V 19 103.284 112.596 -12.349 1.00 1.70 \ ATOM 110 CA CYS V 19 102.623 111.658 -11.464 1.00 1.70 \ ATOM 111 C CYS V 19 102.848 111.934 -9.948 1.00 1.70 \ ATOM 112 O CYS V 19 101.905 111.901 -9.143 1.00 1.70 \ ATOM 113 CB CYS V 19 103.081 110.258 -11.916 1.00 1.70 \ ATOM 114 SG CYS V 19 102.802 110.057 -13.736 1.00 1.70 \ ATOM 115 N GLY V 20 104.086 112.243 -9.574 1.00 -0.16 \ ATOM 116 CA GLY V 20 104.448 112.479 -8.168 1.00 -0.16 \ ATOM 117 C GLY V 20 104.578 111.182 -7.373 1.00 -0.16 \ ATOM 118 O GLY V 20 105.316 110.254 -7.784 1.00 -0.16 \ ATOM 119 N GLU V 21 103.869 111.135 -6.236 1.00 0.19 \ ATOM 120 CA GLU V 21 103.737 109.920 -5.434 1.00 0.19 \ ATOM 121 C GLU V 21 102.720 108.884 -5.950 1.00 0.19 \ ATOM 122 O GLU V 21 102.572 107.838 -5.336 1.00 0.19 \ ATOM 123 N ARG V 22 101.997 109.167 -7.040 1.00 -0.61 \ ATOM 124 CA ARG V 22 101.149 108.143 -7.687 1.00 -0.61 \ ATOM 125 C ARG V 22 101.996 107.036 -8.314 1.00 -0.61 \ ATOM 126 O ARG V 22 101.524 105.905 -8.470 1.00 -0.61 \ ATOM 127 CB ARG V 22 100.247 108.751 -8.772 1.00 -0.61 \ ATOM 128 CG ARG V 22 98.854 109.180 -8.301 1.00 -0.61 \ ATOM 129 CD ARG V 22 98.020 109.720 -9.460 1.00 -0.61 \ ATOM 130 NE ARG V 22 98.504 111.029 -9.894 1.00 -0.61 \ ATOM 131 CZ ARG V 22 98.284 111.597 -11.079 1.00 -0.61 \ ATOM 132 NH1 ARG V 22 97.575 110.978 -12.018 1.00 -0.61 \ ATOM 133 NH2 ARG V 22 98.800 112.804 -11.332 1.00 -0.61 \ ATOM 134 N GLY V 23 103.237 107.352 -8.703 1.00 1.70 \ ATOM 135 CA GLY V 23 104.056 106.395 -9.425 1.00 1.70 \ ATOM 136 C GLY V 23 103.575 106.219 -10.849 1.00 1.70 \ ATOM 137 O GLY V 23 102.568 106.812 -11.237 1.00 1.70 \ ATOM 138 N PHE V 24 104.277 105.391 -11.626 1.00 1.13 \ ATOM 139 CA PHE V 24 103.995 105.250 -13.069 1.00 1.13 \ ATOM 140 C PHE V 24 104.658 104.016 -13.623 1.00 1.13 \ ATOM 141 O PHE V 24 105.350 103.302 -12.909 1.00 1.13 \ ATOM 142 CB PHE V 24 104.488 106.480 -13.837 1.00 1.13 \ ATOM 143 CG PHE V 24 105.993 106.674 -13.820 1.00 1.13 \ ATOM 144 CD1 PHE V 24 106.592 107.402 -12.816 1.00 1.13 \ ATOM 145 CD2 PHE V 24 106.801 106.135 -14.821 1.00 1.13 \ ATOM 146 CE1 PHE V 24 107.974 107.582 -12.810 1.00 1.13 \ ATOM 147 CE2 PHE V 24 108.181 106.324 -14.820 1.00 1.13 \ ATOM 148 CZ PHE V 24 108.767 107.054 -13.810 1.00 1.13 \ ATOM 149 N PHE V 25 104.417 103.772 -14.903 1.00 0.52 \ ATOM 150 CA PHE V 25 104.983 102.646 -15.633 1.00 0.52 \ ATOM 151 C PHE V 25 105.571 103.235 -16.895 1.00 0.52 \ ATOM 152 O PHE V 25 104.998 104.143 -17.475 1.00 0.52 \ ATOM 153 CB PHE V 25 103.915 101.584 -15.986 1.00 0.52 \ ATOM 154 CG PHE V 25 102.669 102.150 -16.653 1.00 0.52 \ ATOM 155 CD1 PHE V 25 101.623 102.659 -15.884 1.00 0.52 \ ATOM 156 CD2 PHE V 25 102.555 102.183 -18.043 1.00 0.52 \ ATOM 157 CE1 PHE V 25 100.496 103.192 -16.481 1.00 0.52 \ ATOM 158 CE2 PHE V 25 101.422 102.708 -18.650 1.00 0.52 \ ATOM 159 CZ PHE V 25 100.393 103.215 -17.870 1.00 0.52 \ ATOM 160 N TYR V 26 106.737 102.746 -17.278 1.00 -0.24 \ ATOM 161 CA TYR V 26 107.415 103.189 -18.476 1.00 -0.24 \ ATOM 162 C TYR V 26 107.714 101.939 -19.272 1.00 -0.24 \ ATOM 163 O TYR V 26 108.483 101.094 -18.815 1.00 -0.24 \ ATOM 164 CB TYR V 26 108.700 103.953 -18.137 1.00 -0.24 \ ATOM 165 CG TYR V 26 109.592 104.181 -19.329 1.00 -0.24 \ ATOM 166 CD1 TYR V 26 109.273 105.117 -20.309 1.00 -0.24 \ ATOM 167 CD2 TYR V 26 110.730 103.419 -19.500 1.00 -0.24 \ ATOM 168 CE1 TYR V 26 110.102 105.307 -21.402 1.00 -0.24 \ ATOM 169 CE2 TYR V 26 111.553 103.595 -20.589 1.00 -0.24 \ ATOM 170 CZ TYR V 26 111.235 104.537 -21.530 1.00 -0.24 \ ATOM 171 OH TYR V 26 112.100 104.659 -22.583 1.00 -0.24 \ ATOM 172 N THR V 27 107.084 101.852 -20.450 1.00 -0.98 \ ATOM 173 CA THR V 27 107.157 100.707 -21.341 1.00 -0.98 \ ATOM 174 C THR V 27 107.505 101.165 -22.749 1.00 -0.98 \ ATOM 175 O THR V 27 106.621 101.466 -23.535 1.00 -0.98 \ ATOM 176 CB THR V 27 105.782 100.003 -21.433 1.00 -0.98 \ ATOM 177 OG1 THR V 27 105.166 99.941 -20.146 1.00 -0.98 \ ATOM 178 CG2 THR V 27 105.936 98.592 -22.025 1.00 -0.98 \ ATOM 179 N PRO V 28 108.784 101.208 -23.100 1.00 -0.79 \ ATOM 180 CA PRO V 28 109.067 101.658 -24.467 1.00 -0.79 \ ATOM 181 C PRO V 28 108.675 100.660 -25.598 1.00 -0.79 \ ATOM 182 O PRO V 28 108.874 100.979 -26.784 1.00 -0.79 \ ATOM 183 CB PRO V 28 110.578 101.919 -24.433 1.00 -0.79 \ ATOM 184 CG PRO V 28 111.099 101.017 -23.368 1.00 -0.79 \ ATOM 185 CD PRO V 28 109.986 100.766 -22.390 1.00 -0.79 \ ATOM 186 N LYS V 29 108.098 99.501 -25.236 1.00 -0.90 \ ATOM 187 CA LYS V 29 107.826 98.380 -26.159 1.00 -0.90 \ ATOM 188 C LYS V 29 106.862 98.669 -27.293 1.00 -0.90 \ ATOM 189 O LYS V 29 107.279 98.710 -28.452 1.00 -0.90 \ """, "e5mamV1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mamV1_csv", state=0, origin=1) cmd.zoom("e5mamV1_csv", animate=-1)