cmd.read_pdbstr("""\ ATOM 1 N VAL X 2 2.355 -37.446 -43.229 1.00 -1.00 \ ATOM 2 CA VAL X 2 1.913 -38.680 -43.940 1.00 -1.00 \ ATOM 3 C VAL X 2 2.454 -39.986 -43.351 1.00 -1.00 \ ATOM 4 O VAL X 2 2.987 -40.023 -42.246 1.00 -1.00 \ ATOM 5 N ASN X 3 2.345 -41.050 -44.133 1.00 -0.47 \ ATOM 6 CA ASN X 3 2.497 -42.420 -43.626 1.00 -0.47 \ ATOM 7 C ASN X 3 3.899 -42.817 -43.101 1.00 -0.47 \ ATOM 8 O ASN X 3 3.961 -43.632 -42.184 1.00 -0.47 \ ATOM 9 CB ASN X 3 1.864 -43.449 -44.610 1.00 -0.47 \ ATOM 10 CG ASN X 3 2.856 -44.449 -45.182 1.00 -0.47 \ ATOM 11 OD1 ASN X 3 3.780 -44.087 -45.918 1.00 -0.47 \ ATOM 12 ND2 ASN X 3 2.628 -45.734 -44.895 1.00 -0.47 \ ATOM 13 N GLN X 4 5.001 -42.239 -43.598 1.00 0.22 \ ATOM 14 CA GLN X 4 6.344 -42.467 -42.967 1.00 0.22 \ ATOM 15 C GLN X 4 6.476 -41.898 -41.507 1.00 0.22 \ ATOM 16 O GLN X 4 7.125 -42.478 -40.620 1.00 0.22 \ ATOM 17 CB GLN X 4 7.456 -41.828 -43.821 1.00 0.22 \ ATOM 18 N HIS X 5 5.883 -40.741 -41.295 1.00 -0.04 \ ATOM 19 CA HIS X 5 5.762 -40.129 -39.961 1.00 -0.04 \ ATOM 20 C HIS X 5 4.920 -40.960 -38.951 1.00 -0.04 \ ATOM 21 O HIS X 5 5.255 -41.026 -37.804 1.00 -0.04 \ ATOM 22 CB HIS X 5 5.131 -38.727 -40.061 1.00 -0.04 \ ATOM 23 CG HIS X 5 5.352 -37.898 -38.829 1.00 -0.04 \ ATOM 24 ND1 HIS X 5 6.612 -37.529 -38.416 1.00 -0.04 \ ATOM 25 CD2 HIS X 5 4.495 -37.426 -37.896 1.00 -0.04 \ ATOM 26 CE1 HIS X 5 6.524 -36.829 -37.301 1.00 -0.04 \ ATOM 27 NE2 HIS X 5 5.247 -36.749 -36.964 1.00 -0.04 \ ATOM 28 N LEU X 6 3.810 -41.529 -39.408 1.00 1.15 \ ATOM 29 CA LEU X 6 2.934 -42.359 -38.600 1.00 1.15 \ ATOM 30 C LEU X 6 3.659 -43.649 -38.282 1.00 1.15 \ ATOM 31 O LEU X 6 3.612 -44.101 -37.125 1.00 1.15 \ ATOM 32 CB LEU X 6 1.592 -42.602 -39.274 1.00 1.15 \ ATOM 33 CG LEU X 6 0.799 -41.366 -39.714 1.00 1.15 \ ATOM 34 CD1 LEU X 6 -0.485 -41.806 -40.355 1.00 1.15 \ ATOM 35 CD2 LEU X 6 0.544 -40.360 -38.600 1.00 1.15 \ ATOM 36 N CYS X 7 4.441 -44.173 -39.233 1.00 1.70 \ ATOM 37 CA CYS X 7 5.262 -45.386 -39.030 1.00 1.70 \ ATOM 38 C CYS X 7 6.371 -45.151 -38.001 1.00 1.70 \ ATOM 39 O CYS X 7 6.640 -45.984 -37.088 1.00 1.70 \ ATOM 40 CB CYS X 7 5.884 -45.888 -40.352 1.00 1.70 \ ATOM 41 SG CYS X 7 7.087 -47.249 -40.166 1.00 1.70 \ ATOM 42 N GLY X 8 7.014 -44.003 -38.152 1.00 0.71 \ ATOM 43 CA GLY X 8 7.992 -43.532 -37.184 1.00 0.71 \ ATOM 44 C GLY X 8 7.480 -43.569 -35.750 1.00 0.71 \ ATOM 45 O GLY X 8 8.217 -44.022 -34.878 1.00 0.71 \ ATOM 46 N SER X 9 6.234 -43.121 -35.519 1.00 -0.48 \ ATOM 47 CA SER X 9 5.630 -43.196 -34.184 1.00 -0.48 \ ATOM 48 C SER X 9 5.583 -44.636 -33.615 1.00 -0.48 \ ATOM 49 O SER X 9 5.946 -44.860 -32.448 1.00 -0.48 \ ATOM 50 CB SER X 9 4.286 -42.553 -34.180 1.00 -0.48 \ ATOM 51 OG SER X 9 3.694 -42.639 -32.909 1.00 -0.48 \ ATOM 52 N HIS X 10 5.229 -45.608 -34.461 1.00 -0.23 \ ATOM 53 CA HIS X 10 5.227 -47.010 -34.100 1.00 -0.23 \ ATOM 54 C HIS X 10 6.630 -47.555 -33.830 1.00 -0.23 \ ATOM 55 O HIS X 10 6.832 -48.390 -32.947 1.00 -0.23 \ ATOM 56 CB HIS X 10 4.509 -47.825 -35.204 1.00 -0.23 \ ATOM 57 CG HIS X 10 3.021 -47.561 -35.288 1.00 -0.23 \ ATOM 58 ND1 HIS X 10 2.118 -48.222 -34.495 1.00 -0.23 \ ATOM 59 CD2 HIS X 10 2.296 -46.718 -36.065 1.00 -0.23 \ ATOM 60 CE1 HIS X 10 0.900 -47.770 -34.772 1.00 -0.23 \ ATOM 61 NE2 HIS X 10 0.977 -46.870 -35.737 1.00 -0.23 \ ATOM 62 N LEU X 11 7.589 -47.143 -34.629 1.00 1.70 \ ATOM 63 CA LEU X 11 8.994 -47.547 -34.430 1.00 1.70 \ ATOM 64 C LEU X 11 9.591 -47.157 -33.089 1.00 1.70 \ ATOM 65 O LEU X 11 10.270 -47.978 -32.439 1.00 1.70 \ ATOM 66 CB LEU X 11 9.859 -46.953 -35.541 1.00 1.70 \ ATOM 67 CG LEU X 11 9.547 -47.550 -36.921 1.00 1.70 \ ATOM 68 CD1 LEU X 11 10.261 -46.768 -37.976 1.00 1.70 \ ATOM 69 CD2 LEU X 11 9.885 -49.037 -36.985 1.00 1.70 \ ATOM 70 N VAL X 12 9.353 -45.929 -32.649 1.00 0.71 \ ATOM 71 CA VAL X 12 9.940 -45.506 -31.399 1.00 0.71 \ ATOM 72 C VAL X 12 9.270 -46.152 -30.176 1.00 0.71 \ ATOM 73 O VAL X 12 9.948 -46.406 -29.183 1.00 0.71 \ ATOM 74 CB VAL X 12 10.087 -43.967 -31.274 1.00 0.71 \ ATOM 75 CG1 VAL X 12 10.896 -43.401 -32.428 1.00 0.71 \ ATOM 76 CG2 VAL X 12 8.766 -43.245 -31.135 1.00 0.71 \ ATOM 77 N GLU X 13 7.975 -46.490 -30.262 1.00 0.66 \ ATOM 78 CA GLU X 13 7.339 -47.301 -29.184 1.00 0.66 \ ATOM 79 C GLU X 13 7.922 -48.715 -29.212 1.00 0.66 \ ATOM 80 O GLU X 13 8.088 -49.327 -28.165 1.00 0.66 \ ATOM 81 CB GLU X 13 5.800 -47.305 -29.314 1.00 0.66 \ ATOM 82 CG GLU X 13 5.007 -48.395 -28.583 1.00 0.66 \ ATOM 83 CD GLU X 13 4.763 -48.137 -27.106 1.00 0.66 \ ATOM 84 OE1 GLU X 13 3.789 -47.410 -26.768 1.00 0.66 \ ATOM 85 OE2 GLU X 13 5.508 -48.711 -26.269 1.00 0.66 \ ATOM 86 N ALA X 14 8.233 -49.232 -30.404 1.00 -0.00 \ ATOM 87 CA ALA X 14 8.805 -50.574 -30.495 1.00 -0.00 \ ATOM 88 C ALA X 14 10.252 -50.617 -29.898 1.00 -0.00 \ ATOM 89 O ALA X 14 10.577 -51.525 -29.182 1.00 -0.00 \ ATOM 90 CB ALA X 14 8.769 -51.094 -31.930 1.00 -0.00 \ ATOM 91 N LEU X 15 11.060 -49.602 -30.167 1.00 1.70 \ ATOM 92 CA LEU X 15 12.414 -49.501 -29.606 1.00 1.70 \ ATOM 93 C LEU X 15 12.383 -49.250 -28.112 1.00 1.70 \ ATOM 94 O LEU X 15 13.292 -49.695 -27.355 1.00 1.70 \ ATOM 95 CB LEU X 15 13.190 -48.333 -30.247 1.00 1.70 \ ATOM 96 CG LEU X 15 13.495 -48.410 -31.750 1.00 1.70 \ ATOM 97 CD1 LEU X 15 14.049 -47.081 -32.200 1.00 1.70 \ ATOM 98 CD2 LEU X 15 14.440 -49.581 -32.059 1.00 1.70 \ ATOM 99 N TYR X 16 11.412 -48.438 -27.688 1.00 -0.22 \ ATOM 100 CA TYR X 16 11.207 -48.225 -26.271 1.00 -0.22 \ ATOM 101 C TYR X 16 11.237 -49.560 -25.573 1.00 -0.22 \ ATOM 102 O TYR X 16 12.014 -49.733 -24.614 1.00 -0.22 \ ATOM 103 CB TYR X 16 9.893 -47.461 -25.960 1.00 -0.22 \ ATOM 104 CG TYR X 16 9.529 -47.535 -24.473 1.00 -0.22 \ ATOM 105 CD1 TYR X 16 10.296 -46.876 -23.515 1.00 -0.22 \ ATOM 106 CD2 TYR X 16 8.460 -48.316 -24.031 1.00 -0.22 \ ATOM 107 CE1 TYR X 16 9.994 -46.978 -22.158 1.00 -0.22 \ ATOM 108 CE2 TYR X 16 8.160 -48.425 -22.684 1.00 -0.22 \ ATOM 109 CZ TYR X 16 8.931 -47.731 -21.763 1.00 -0.22 \ ATOM 110 OH TYR X 16 8.651 -47.835 -20.446 1.00 -0.22 \ ATOM 111 N LEU X 17 10.399 -50.507 -26.034 1.00 -0.23 \ ATOM 112 CA LEU X 17 10.282 -51.821 -25.374 1.00 -0.23 \ ATOM 113 C LEU X 17 11.485 -52.722 -25.729 1.00 -0.23 \ ATOM 114 O LEU X 17 11.978 -53.424 -24.862 1.00 -0.23 \ ATOM 115 CB LEU X 17 8.965 -52.549 -25.713 1.00 -0.23 \ ATOM 116 CG LEU X 17 7.691 -52.063 -25.010 1.00 -0.23 \ ATOM 117 CD1 LEU X 17 6.456 -52.672 -25.617 1.00 -0.23 \ ATOM 118 CD2 LEU X 17 7.727 -52.317 -23.508 1.00 -0.23 \ ATOM 119 N VAL X 18 11.957 -52.686 -26.978 1.00 0.28 \ ATOM 120 CA VAL X 18 13.019 -53.611 -27.425 1.00 0.28 \ ATOM 121 C VAL X 18 14.333 -53.310 -26.679 1.00 0.28 \ ATOM 122 O VAL X 18 14.946 -54.211 -26.118 1.00 0.28 \ ATOM 123 CB VAL X 18 13.189 -53.598 -28.965 1.00 0.28 \ ATOM 124 CG1 VAL X 18 14.497 -54.290 -29.409 1.00 0.28 \ ATOM 125 CG2 VAL X 18 11.962 -54.240 -29.620 1.00 0.28 \ ATOM 126 N CYS X 19 14.694 -52.040 -26.617 1.00 1.70 \ ATOM 127 CA CYS X 19 15.955 -51.606 -26.056 1.00 1.70 \ ATOM 128 C CYS X 19 16.039 -51.608 -24.506 1.00 1.70 \ ATOM 129 O CYS X 19 17.118 -51.747 -23.956 1.00 1.70 \ ATOM 130 CB CYS X 19 16.295 -50.216 -26.615 1.00 1.70 \ ATOM 131 SG CYS X 19 16.239 -50.130 -28.410 1.00 1.70 \ ATOM 132 N GLY X 20 14.914 -51.468 -23.807 1.00 -0.16 \ ATOM 133 CA GLY X 20 14.907 -51.552 -22.340 1.00 -0.16 \ ATOM 134 C GLY X 20 15.697 -50.413 -21.711 1.00 -0.16 \ ATOM 135 O GLY X 20 15.681 -49.296 -22.221 1.00 -0.16 \ ATOM 136 N GLU X 21 16.380 -50.718 -20.605 1.00 0.19 \ ATOM 137 CA GLU X 21 17.317 -49.809 -19.944 1.00 0.19 \ ATOM 138 C GLU X 21 18.359 -49.177 -20.896 1.00 0.19 \ ATOM 139 O GLU X 21 18.706 -48.002 -20.723 1.00 0.19 \ ATOM 140 CB GLU X 21 18.045 -50.545 -18.807 1.00 0.19 \ ATOM 141 N ARG X 22 18.809 -49.918 -21.912 1.00 -0.61 \ ATOM 142 CA ARG X 22 19.756 -49.389 -22.907 1.00 -0.61 \ ATOM 143 C ARG X 22 19.370 -48.051 -23.535 1.00 -0.61 \ ATOM 144 O ARG X 22 20.222 -47.228 -23.840 1.00 -0.61 \ ATOM 145 CB ARG X 22 19.955 -50.372 -24.074 1.00 -0.61 \ ATOM 146 CG ARG X 22 20.817 -51.583 -23.808 1.00 -0.61 \ ATOM 147 CD ARG X 22 21.037 -52.440 -25.075 1.00 -0.61 \ ATOM 148 NE ARG X 22 19.917 -53.373 -25.335 1.00 -0.61 \ ATOM 149 CZ ARG X 22 19.807 -54.195 -26.388 1.00 -0.61 \ ATOM 150 NH1 ARG X 22 20.751 -54.249 -27.336 1.00 -0.61 \ ATOM 151 NH2 ARG X 22 18.733 -54.970 -26.501 1.00 -0.61 \ ATOM 152 N GLY X 23 18.083 -47.850 -23.790 1.00 1.70 \ ATOM 153 CA GLY X 23 17.665 -46.697 -24.560 1.00 1.70 \ ATOM 154 C GLY X 23 18.063 -46.783 -26.031 1.00 1.70 \ ATOM 155 O GLY X 23 18.508 -47.828 -26.550 1.00 1.70 \ ATOM 156 N PHE X 24 17.913 -45.665 -26.705 1.00 1.13 \ ATOM 157 CA PHE X 24 18.129 -45.620 -28.124 1.00 1.13 \ ATOM 158 C PHE X 24 18.292 -44.214 -28.576 1.00 1.13 \ ATOM 159 O PHE X 24 17.824 -43.285 -27.947 1.00 1.13 \ ATOM 160 CB PHE X 24 16.947 -46.277 -28.892 1.00 1.13 \ ATOM 161 CG PHE X 24 15.614 -45.545 -28.770 1.00 1.13 \ ATOM 162 CD1 PHE X 24 15.235 -44.569 -29.692 1.00 1.13 \ ATOM 163 CD2 PHE X 24 14.720 -45.882 -27.767 1.00 1.13 \ ATOM 164 CE1 PHE X 24 13.999 -43.933 -29.584 1.00 1.13 \ ATOM 165 CE2 PHE X 24 13.493 -45.235 -27.666 1.00 1.13 \ ATOM 166 CZ PHE X 24 13.148 -44.274 -28.580 1.00 1.13 \ ATOM 167 N PHE X 25 18.942 -44.084 -29.707 1.00 0.52 \ ATOM 168 CA PHE X 25 19.064 -42.829 -30.404 1.00 0.52 \ ATOM 169 C PHE X 25 18.139 -42.991 -31.602 1.00 0.52 \ ATOM 170 O PHE X 25 18.175 -44.018 -32.297 1.00 0.52 \ ATOM 171 CB PHE X 25 20.521 -42.610 -30.846 1.00 0.52 \ ATOM 172 CG PHE X 25 21.101 -41.306 -30.375 1.00 0.52 \ ATOM 173 CD1 PHE X 25 20.852 -40.123 -31.077 1.00 0.52 \ ATOM 174 CD2 PHE X 25 21.880 -41.256 -29.207 1.00 0.52 \ ATOM 175 CE1 PHE X 25 21.373 -38.916 -30.630 1.00 0.52 \ ATOM 176 CE2 PHE X 25 22.405 -40.053 -28.758 1.00 0.52 \ ATOM 177 CZ PHE X 25 22.155 -38.884 -29.470 1.00 0.52 \ ATOM 178 N TYR X 26 17.287 -42.005 -31.817 1.00 -0.24 \ ATOM 179 CA TYR X 26 16.345 -42.061 -32.900 1.00 -0.24 \ ATOM 180 C TYR X 26 16.649 -41.007 -33.923 1.00 -0.24 \ ATOM 181 O TYR X 26 16.357 -39.828 -33.698 1.00 -0.24 \ ATOM 182 CB TYR X 26 14.903 -41.881 -32.421 1.00 -0.24 \ ATOM 183 CG TYR X 26 13.979 -41.800 -33.599 1.00 -0.24 \ ATOM 184 CD1 TYR X 26 13.808 -42.906 -34.437 1.00 -0.24 \ ATOM 185 CD2 TYR X 26 13.341 -40.618 -33.935 1.00 -0.24 \ ATOM 186 CE1 TYR X 26 12.980 -42.846 -35.541 1.00 -0.24 \ ATOM 187 CE2 TYR X 26 12.522 -40.548 -35.051 1.00 -0.24 \ ATOM 188 CZ TYR X 26 12.355 -41.665 -35.844 1.00 -0.24 \ ATOM 189 OH TYR X 26 11.524 -41.612 -36.917 1.00 -0.24 \ ATOM 190 N THR X 27 17.178 -41.442 -35.070 1.00 -0.98 \ ATOM 191 CA THR X 27 17.525 -40.518 -36.168 1.00 -0.98 \ ATOM 192 C THR X 27 16.686 -40.820 -37.417 1.00 -0.98 \ ATOM 193 O THR X 27 16.831 -41.907 -37.995 1.00 -0.98 \ ATOM 194 CB THR X 27 19.024 -40.606 -36.545 1.00 -0.98 \ ATOM 195 OG1 THR X 27 19.815 -40.834 -35.371 1.00 -0.98 \ ATOM 196 CG2 THR X 27 19.473 -39.300 -37.241 1.00 -0.98 \ ATOM 197 N PRO X 28 15.809 -39.874 -37.833 1.00 -0.79 \ ATOM 198 CA PRO X 28 15.033 -40.009 -39.080 1.00 -0.79 \ ATOM 199 C PRO X 28 15.863 -40.265 -40.354 1.00 -0.79 \ ATOM 200 O PRO X 28 15.395 -40.991 -41.230 1.00 -0.79 \ ATOM 201 CB PRO X 28 14.294 -38.670 -39.187 1.00 -0.79 \ ATOM 202 CG PRO X 28 14.172 -38.208 -37.791 1.00 -0.79 \ ATOM 203 CD PRO X 28 15.398 -38.675 -37.081 1.00 -0.79 \ ATOM 204 N LYS X 29 17.052 -39.664 -40.461 1.00 -0.90 \ ATOM 205 CA LYS X 29 17.991 -39.968 -41.553 1.00 -0.90 \ ATOM 206 C LYS X 29 19.461 -39.801 -41.155 1.00 -0.90 \ ATOM 207 O LYS X 29 20.263 -40.719 -41.334 1.00 -0.90 \ """, "e5mt3J1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mt3J1_csv", state=0, origin=1) cmd.zoom("e5mt3J1_csv", animate=-1)