cmd.read_pdbstr("""\ ATOM 1 N GLY e 1 -9.703 -16.171 -17.295 1.00 0.33 \ ATOM 2 CA GLY e 1 -10.236 -15.825 -15.958 1.00 0.33 \ ATOM 3 C GLY e 1 -10.279 -14.329 -15.726 1.00 0.33 \ ATOM 4 O GLY e 1 -10.616 -13.552 -16.635 1.00 0.33 \ ATOM 5 N ILE e 2 -9.938 -13.930 -14.501 1.00 0.44 \ ATOM 6 CA ILE e 2 -10.056 -12.518 -14.042 1.00 0.44 \ ATOM 7 C ILE e 2 -9.213 -11.556 -14.851 1.00 0.44 \ ATOM 8 O ILE e 2 -9.648 -10.483 -15.234 1.00 0.44 \ ATOM 9 CB ILE e 2 -9.733 -12.401 -12.505 1.00 0.44 \ ATOM 10 CG1 ILE e 2 -9.998 -10.971 -12.003 1.00 0.44 \ ATOM 11 CG2 ILE e 2 -8.316 -12.848 -12.171 1.00 0.44 \ ATOM 12 CD1 ILE e 2 -10.044 -10.835 -10.500 1.00 0.44 \ ATOM 13 N VAL e 3 -7.993 -11.970 -15.140 1.00 1.08 \ ATOM 14 CA VAL e 3 -7.083 -11.159 -15.911 1.00 1.08 \ ATOM 15 C VAL e 3 -7.707 -10.825 -17.290 1.00 1.08 \ ATOM 16 O VAL e 3 -7.776 -9.660 -17.680 1.00 1.08 \ ATOM 17 CB VAL e 3 -5.747 -11.898 -16.063 1.00 1.08 \ ATOM 18 CG1 VAL e 3 -4.891 -11.293 -17.155 1.00 1.08 \ ATOM 19 CG2 VAL e 3 -5.014 -11.914 -14.740 1.00 1.08 \ ATOM 20 N GLU e 4 -8.153 -11.851 -17.997 1.00 0.21 \ ATOM 21 CA GLU e 4 -8.756 -11.658 -19.317 1.00 0.21 \ ATOM 22 C GLU e 4 -10.029 -10.838 -19.217 1.00 0.21 \ ATOM 23 O GLU e 4 -10.278 -9.975 -20.070 1.00 0.21 \ ATOM 24 CB GLU e 4 -9.062 -13.000 -19.989 1.00 0.21 \ ATOM 25 CG GLU e 4 -9.556 -12.914 -21.440 1.00 0.21 \ ATOM 26 CD GLU e 4 -8.446 -13.019 -22.481 1.00 0.21 \ ATOM 27 OE1 GLU e 4 -8.168 -12.005 -23.166 1.00 0.21 \ ATOM 28 OE2 GLU e 4 -7.860 -14.118 -22.619 1.00 0.21 \ ATOM 29 N GLN e 5 -10.828 -11.070 -18.183 1.00 0.00 \ ATOM 30 CA GLN e 5 -12.045 -10.316 -18.031 1.00 0.00 \ ATOM 31 C GLN e 5 -11.737 -8.870 -17.625 1.00 0.00 \ ATOM 32 O GLN e 5 -12.271 -7.936 -18.209 1.00 0.00 \ ATOM 33 CB GLN e 5 -12.953 -10.924 -16.995 1.00 0.00 \ ATOM 34 CG GLN e 5 -14.359 -10.341 -17.046 1.00 0.00 \ ATOM 35 CD GLN e 5 -15.377 -11.136 -16.252 1.00 0.00 \ ATOM 36 OE1 GLN e 5 -15.023 -11.998 -15.448 1.00 0.00 \ ATOM 37 NE2 GLN e 5 -16.657 -10.847 -16.476 1.00 0.00 \ ATOM 38 N CYS e 6 -10.895 -8.695 -16.611 1.00 1.70 \ ATOM 39 CA CYS e 6 -10.814 -7.411 -15.898 1.00 1.70 \ ATOM 40 C CYS e 6 -9.550 -6.539 -16.193 1.00 1.70 \ ATOM 41 O CYS e 6 -9.405 -5.430 -15.622 1.00 1.70 \ ATOM 42 CB CYS e 6 -11.005 -7.681 -14.398 1.00 1.70 \ ATOM 43 SG CYS e 6 -12.570 -8.536 -14.011 1.00 1.70 \ ATOM 44 N CYS e 7 -8.650 -7.027 -17.052 1.00 1.70 \ ATOM 45 CA CYS e 7 -7.554 -6.186 -17.619 1.00 1.70 \ ATOM 46 C CYS e 7 -7.819 -5.633 -19.036 1.00 1.70 \ ATOM 47 O CYS e 7 -7.177 -4.632 -19.447 1.00 1.70 \ ATOM 48 CB CYS e 7 -6.220 -6.926 -17.565 1.00 1.70 \ ATOM 49 SG CYS e 7 -5.870 -7.480 -15.877 1.00 1.70 \ ATOM 50 N THR e 8 -8.777 -6.252 -19.747 1.00 -0.68 \ ATOM 51 CA THR e 8 -9.240 -5.816 -21.077 1.00 -0.68 \ ATOM 52 C THR e 8 -10.397 -4.830 -20.982 1.00 -0.68 \ ATOM 53 O THR e 8 -10.668 -4.077 -21.929 1.00 -0.68 \ ATOM 54 CB THR e 8 -9.776 -7.013 -21.936 1.00 -0.68 \ ATOM 55 OG1 THR e 8 -11.002 -7.536 -21.392 1.00 -0.68 \ ATOM 56 CG2 THR e 8 -8.771 -8.141 -22.057 1.00 -0.68 \ ATOM 57 N SER e 9 -11.158 -4.921 -19.896 1.00 -0.80 \ ATOM 58 CA SER e 9 -12.250 -4.030 -19.674 1.00 -0.80 \ ATOM 59 C SER e 9 -12.335 -3.765 -18.151 1.00 -0.80 \ ATOM 60 O SER e 9 -11.711 -4.478 -17.339 1.00 -0.80 \ ATOM 61 CB SER e 9 -13.518 -4.655 -20.265 1.00 -0.80 \ ATOM 62 OG SER e 9 -14.641 -3.919 -19.861 1.00 -0.80 \ ATOM 63 N ILE e 10 -13.013 -2.684 -17.783 1.00 -0.79 \ ATOM 64 CA ILE e 10 -13.051 -2.263 -16.416 1.00 -0.79 \ ATOM 65 C ILE e 10 -14.198 -3.039 -15.789 1.00 -0.79 \ ATOM 66 O ILE e 10 -15.368 -2.714 -16.035 1.00 -0.79 \ ATOM 67 CB ILE e 10 -13.342 -0.759 -16.227 1.00 -0.79 \ ATOM 68 CG1 ILE e 10 -12.328 0.097 -16.961 1.00 -0.79 \ ATOM 69 CG2 ILE e 10 -13.401 -0.456 -14.726 1.00 -0.79 \ ATOM 70 CD1 ILE e 10 -12.566 1.595 -16.825 1.00 -0.79 \ ATOM 71 N CYS e 11 -13.864 -4.019 -14.957 1.00 1.70 \ ATOM 72 CA CYS e 11 -14.850 -4.746 -14.148 1.00 1.70 \ ATOM 73 C CYS e 11 -15.516 -3.980 -13.053 1.00 1.70 \ ATOM 74 O CYS e 11 -14.913 -3.097 -12.407 1.00 1.70 \ ATOM 75 CB CYS e 11 -14.233 -5.980 -13.499 1.00 1.70 \ ATOM 76 SG CYS e 11 -14.038 -7.273 -14.726 1.00 1.70 \ ATOM 77 N SER e 12 -16.771 -4.368 -12.805 0.50 -0.16 \ ATOM 78 CA SER e 12 -17.607 -3.818 -11.737 0.50 -0.16 \ ATOM 79 C SER e 12 -17.292 -4.562 -10.449 0.50 -0.16 \ ATOM 80 O SER e 12 -16.691 -5.632 -10.472 0.50 -0.16 \ ATOM 81 CB SER e 12 -19.095 -4.034 -12.106 0.50 -0.16 \ ATOM 82 OG SER e 12 -19.448 -5.394 -11.941 0.50 -0.16 \ ATOM 83 N LEU e 13 -17.682 -4.006 -9.316 1.00 -0.38 \ ATOM 84 CA LEU e 13 -17.549 -4.743 -8.063 1.00 -0.38 \ ATOM 85 C LEU e 13 -18.248 -6.126 -8.105 1.00 -0.38 \ ATOM 86 O LEU e 13 -17.718 -7.096 -7.553 1.00 -0.38 \ ATOM 87 CB LEU e 13 -18.072 -3.926 -6.885 1.00 -0.38 \ ATOM 88 CG LEU e 13 -17.282 -2.635 -6.526 1.00 -0.38 \ ATOM 89 CD1 LEU e 13 -17.843 -1.955 -5.267 1.00 -0.38 \ ATOM 90 CD2 LEU e 13 -15.794 -2.944 -6.386 1.00 -0.38 \ ATOM 91 N TYR e 14 -19.393 -6.193 -8.818 1.00 -1.24 \ ATOM 92 CA TYR e 14 -20.179 -7.440 -8.968 1.00 -1.24 \ ATOM 93 C TYR e 14 -19.348 -8.444 -9.683 1.00 -1.24 \ ATOM 94 O TYR e 14 -19.247 -9.559 -9.268 1.00 -1.24 \ ATOM 95 CB TYR e 14 -21.464 -7.164 -9.766 1.00 -1.24 \ ATOM 96 CG TYR e 14 -22.372 -6.208 -9.004 1.00 -1.24 \ ATOM 97 CD1 TYR e 14 -23.216 -6.668 -7.988 1.00 -1.24 \ ATOM 98 CD2 TYR e 14 -22.361 -4.837 -9.300 1.00 -1.24 \ ATOM 99 CE1 TYR e 14 -24.025 -5.801 -7.270 1.00 -1.24 \ ATOM 100 CE2 TYR e 14 -23.169 -3.964 -8.613 1.00 -1.24 \ ATOM 101 CZ TYR e 14 -23.986 -4.448 -7.598 1.00 -1.24 \ ATOM 102 OH TYR e 14 -24.749 -3.515 -6.973 1.00 -1.24 \ ATOM 103 N GLN e 15 -18.711 -8.006 -10.755 1.00 -0.57 \ ATOM 104 CA GLN e 15 -17.840 -8.839 -11.518 1.00 -0.57 \ ATOM 105 C GLN e 15 -16.639 -9.300 -10.739 1.00 -0.57 \ ATOM 106 O GLN e 15 -16.322 -10.476 -10.813 1.00 -0.57 \ ATOM 107 CB GLN e 15 -17.394 -8.150 -12.811 1.00 -0.57 \ ATOM 108 CG GLN e 15 -18.498 -8.154 -13.866 1.00 -0.57 \ ATOM 109 CD GLN e 15 -18.217 -7.207 -14.989 1.00 -0.57 \ ATOM 110 OE1 GLN e 15 -18.031 -6.004 -14.762 1.00 -0.57 \ ATOM 111 NE2 GLN e 15 -18.173 -7.737 -16.230 1.00 -0.57 \ ATOM 112 N LEU e 16 -15.957 -8.385 -10.044 1.00 0.77 \ ATOM 113 CA LEU e 16 -14.807 -8.793 -9.188 1.00 0.77 \ ATOM 114 C LEU e 16 -15.215 -9.759 -8.091 1.00 0.77 \ ATOM 115 O LEU e 16 -14.464 -10.674 -7.758 1.00 0.77 \ ATOM 116 CB LEU e 16 -14.137 -7.590 -8.495 1.00 0.77 \ ATOM 117 CG LEU e 16 -13.402 -6.542 -9.314 1.00 0.77 \ ATOM 118 CD1 LEU e 16 -12.967 -5.368 -8.436 1.00 0.77 \ ATOM 119 CD2 LEU e 16 -12.225 -7.193 -9.984 1.00 0.77 \ ATOM 120 N GLU e 17 -16.394 -9.544 -7.510 1.00 0.32 \ ATOM 121 CA GLU e 17 -16.876 -10.439 -6.449 1.00 0.32 \ ATOM 122 C GLU e 17 -17.029 -11.913 -6.883 1.00 0.32 \ ATOM 123 O GLU e 17 -17.066 -12.799 -6.042 1.00 0.32 \ ATOM 124 CB GLU e 17 -18.191 -9.927 -5.865 1.00 0.32 \ ATOM 125 CG GLU e 17 -18.635 -10.639 -4.575 1.00 0.32 \ ATOM 126 CD GLU e 17 -19.734 -9.852 -3.895 1.00 0.32 \ ATOM 127 OE1 GLU e 17 -20.710 -9.552 -4.600 1.00 0.32 \ ATOM 128 OE2 GLU e 17 -19.595 -9.483 -2.708 1.00 0.32 \ ATOM 129 N ASN e 18 -17.138 -12.160 -8.183 1.00 -0.96 \ ATOM 130 CA ASN e 18 -17.110 -13.543 -8.709 1.00 -0.96 \ ATOM 131 C ASN e 18 -15.955 -14.396 -8.316 1.00 -0.96 \ ATOM 132 O ASN e 18 -16.094 -15.632 -8.216 1.00 -0.96 \ ATOM 133 CB ASN e 18 -17.088 -13.549 -10.231 1.00 -0.96 \ ATOM 134 CG ASN e 18 -18.437 -13.769 -10.791 1.00 -0.96 \ ATOM 135 OD1 ASN e 18 -18.755 -14.874 -11.237 1.00 -0.96 \ ATOM 136 ND2 ASN e 18 -19.272 -12.745 -10.710 1.00 -0.96 \ ATOM 137 N TYR e 19 -14.797 -13.747 -8.182 1.00 1.17 \ ATOM 138 CA TYR e 19 -13.561 -14.436 -7.925 1.00 1.17 \ ATOM 139 C TYR e 19 -13.293 -14.647 -6.435 1.00 1.17 \ ATOM 140 O TYR e 19 -12.296 -15.248 -6.089 1.00 1.17 \ ATOM 141 CB TYR e 19 -12.429 -13.690 -8.625 1.00 1.17 \ ATOM 142 CG TYR e 19 -12.666 -13.620 -10.114 1.00 1.17 \ ATOM 143 CD1 TYR e 19 -12.403 -14.725 -10.938 1.00 1.17 \ ATOM 144 CD2 TYR e 19 -13.236 -12.489 -10.689 1.00 1.17 \ ATOM 145 CE1 TYR e 19 -12.658 -14.676 -12.308 1.00 1.17 \ ATOM 146 CE2 TYR e 19 -13.503 -12.420 -12.038 1.00 1.17 \ ATOM 147 CZ TYR e 19 -13.217 -13.505 -12.856 1.00 1.17 \ ATOM 148 OH TYR e 19 -13.486 -13.398 -14.193 1.00 1.17 \ ATOM 149 N CYS e 20 -14.131 -14.105 -5.544 1.00 1.70 \ ATOM 150 CA CYS e 20 -13.994 -14.383 -4.096 1.00 1.70 \ ATOM 151 C CYS e 20 -14.277 -15.878 -3.781 1.00 1.70 \ ATOM 152 O CYS e 20 -15.040 -16.492 -4.500 1.00 1.70 \ ATOM 153 CB CYS e 20 -15.042 -13.581 -3.316 1.00 1.70 \ ATOM 154 SG CYS e 20 -14.937 -11.796 -3.522 1.00 1.70 \ ATOM 155 N ASN e 21 -13.740 -16.401 -2.675 1.00 0.17 \ ATOM 156 CA ASN e 21 -13.955 -17.821 -2.260 1.00 0.17 \ ATOM 157 C ASN e 21 -15.399 -18.106 -1.873 1.00 0.17 \ ATOM 158 O ASN e 21 -16.035 -19.021 -2.423 1.00 0.17 \ ATOM 159 CB ASN e 21 -13.052 -18.207 -1.081 1.00 0.17 \ ATOM 160 CG ASN e 21 -11.620 -18.438 -1.492 1.00 0.17 \ ATOM 161 OD1 ASN e 21 -11.355 -18.709 -2.660 1.00 0.17 \ ATOM 162 ND2 ASN e 21 -10.682 -18.387 -0.515 1.00 0.17 \ ATOM 163 OXT ASN e 21 -15.939 -17.409 -1.022 1.00 0.17 \ """, "e5mt3e1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mt3e1_csv", state=0, origin=1) cmd.zoom("e5mt3e1_csv", animate=-1)