cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 -2.951 -11.103 26.639 1.00 -1.00 \ ATOM 2 CA PHE D 1 -2.767 -9.681 26.199 1.00 -1.00 \ ATOM 3 C PHE D 1 -2.092 -8.854 27.323 1.00 -1.00 \ ATOM 4 O PHE D 1 -2.758 -8.353 28.234 1.00 -1.00 \ ATOM 5 CB PHE D 1 -4.107 -9.074 25.752 1.00 -1.00 \ ATOM 6 N VAL D 2 -0.762 -8.742 27.252 1.00 -1.00 \ ATOM 7 CA VAL D 2 0.061 -8.084 28.289 1.00 -1.00 \ ATOM 8 C VAL D 2 -0.587 -6.820 28.807 1.00 -1.00 \ ATOM 9 O VAL D 2 -0.807 -6.705 30.002 1.00 -1.00 \ ATOM 10 CB VAL D 2 1.498 -7.788 27.788 1.00 -1.00 \ ATOM 11 CG1 VAL D 2 2.170 -6.664 28.577 1.00 -1.00 \ ATOM 12 CG2 VAL D 2 2.328 -9.055 27.893 1.00 -1.00 \ ATOM 13 N ASN D 3 -0.957 -5.923 27.904 1.00 -0.47 \ ATOM 14 CA ASN D 3 -1.506 -4.644 28.299 1.00 -0.47 \ ATOM 15 C ASN D 3 -2.851 -4.807 28.958 1.00 -0.47 \ ATOM 16 O ASN D 3 -3.210 -3.972 29.771 1.00 -0.47 \ ATOM 17 CB ASN D 3 -1.554 -3.680 27.115 1.00 -0.47 \ ATOM 18 CG ASN D 3 -0.165 -3.367 26.563 1.00 -0.47 \ ATOM 19 OD1 ASN D 3 0.856 -3.614 27.221 1.00 -0.47 \ ATOM 20 ND2 ASN D 3 -0.120 -2.840 25.345 1.00 -0.47 \ ATOM 21 N GLN D 4 -3.582 -5.885 28.630 1.00 0.23 \ ATOM 22 CA GLN D 4 -4.776 -6.282 29.403 1.00 0.23 \ ATOM 23 C GLN D 4 -4.439 -6.895 30.749 1.00 0.23 \ ATOM 24 O GLN D 4 -5.238 -6.833 31.669 1.00 0.23 \ ATOM 25 CB GLN D 4 -5.648 -7.300 28.641 1.00 0.23 \ ATOM 26 CG GLN D 4 -6.485 -6.676 27.546 1.00 0.23 \ ATOM 27 CD GLN D 4 -7.008 -7.702 26.562 1.00 0.23 \ ATOM 28 OE1 GLN D 4 -7.389 -8.834 26.942 1.00 0.23 \ ATOM 29 NE2 GLN D 4 -7.008 -7.326 25.278 1.00 0.23 \ ATOM 30 N HIS D 5 -3.332 -7.613 30.817 1.00 -0.04 \ ATOM 31 CA HIS D 5 -2.890 -8.204 32.075 1.00 -0.04 \ ATOM 32 C HIS D 5 -2.504 -7.082 33.094 1.00 -0.04 \ ATOM 33 O HIS D 5 -2.979 -7.095 34.218 1.00 -0.04 \ ATOM 34 CB HIS D 5 -1.745 -9.160 31.842 1.00 -0.04 \ ATOM 35 CG HIS D 5 -1.338 -9.898 33.060 1.00 -0.04 \ ATOM 36 ND1 HIS D 5 -2.102 -10.898 33.616 1.00 -0.04 \ ATOM 37 CD2 HIS D 5 -0.261 -9.753 33.859 1.00 -0.04 \ ATOM 38 CE1 HIS D 5 -1.508 -11.345 34.703 1.00 -0.04 \ ATOM 39 NE2 HIS D 5 -0.386 -10.664 34.871 1.00 -0.04 \ ATOM 40 N LEU D 6 -1.702 -6.125 32.632 1.00 1.15 \ ATOM 41 CA LEU D 6 -1.421 -4.869 33.325 1.00 1.15 \ ATOM 42 C LEU D 6 -2.724 -4.140 33.663 1.00 1.15 \ ATOM 43 O LEU D 6 -2.940 -3.743 34.790 1.00 1.15 \ ATOM 44 CB LEU D 6 -0.500 -3.963 32.497 1.00 1.15 \ ATOM 45 CG LEU D 6 0.904 -4.478 32.158 1.00 1.15 \ ATOM 46 CD1 LEU D 6 1.763 -3.392 31.534 1.00 1.15 \ ATOM 47 CD2 LEU D 6 1.599 -5.057 33.386 1.00 1.15 \ ATOM 48 N CYS D 7 -3.601 -3.989 32.683 1.00 1.70 \ ATOM 49 CA CYS D 7 -4.898 -3.425 32.909 1.00 1.70 \ ATOM 50 C CYS D 7 -5.685 -4.167 33.978 1.00 1.70 \ ATOM 51 O CYS D 7 -6.340 -3.535 34.800 1.00 1.70 \ ATOM 52 CB CYS D 7 -5.709 -3.401 31.615 1.00 1.70 \ ATOM 53 SG CYS D 7 -7.317 -2.637 31.788 1.00 1.70 \ ATOM 54 N GLY D 8 -5.624 -5.492 33.984 1.00 0.71 \ ATOM 55 CA GLY D 8 -6.316 -6.276 35.038 1.00 0.71 \ ATOM 56 C GLY D 8 -5.845 -5.968 36.473 1.00 0.71 \ ATOM 57 O GLY D 8 -6.631 -5.964 37.450 1.00 0.71 \ ATOM 58 N SER D 9 -4.541 -5.716 36.587 1.00 -0.48 \ ATOM 59 CA SER D 9 -3.970 -5.338 37.821 1.00 -0.48 \ ATOM 60 C SER D 9 -4.676 -4.088 38.353 1.00 -0.48 \ ATOM 61 O SER D 9 -5.096 -4.043 39.508 1.00 -0.48 \ ATOM 62 CB SER D 9 -2.463 -5.112 37.625 1.00 -0.48 \ ATOM 63 OG SER D 9 -1.943 -4.828 38.847 1.00 -0.48 \ ATOM 64 N HIS D 10 -4.804 -3.059 37.523 1.00 -0.23 \ ATOM 65 CA HIS D 10 -5.565 -1.850 37.894 1.00 -0.23 \ ATOM 66 C HIS D 10 -7.086 -2.080 38.214 1.00 -0.23 \ ATOM 67 O HIS D 10 -7.661 -1.465 39.115 1.00 -0.23 \ ATOM 68 CB HIS D 10 -5.386 -0.753 36.791 1.00 -0.23 \ ATOM 69 CG HIS D 10 -3.991 -0.205 36.656 1.00 -0.23 \ ATOM 70 ND1 HIS D 10 -3.566 0.913 37.336 1.00 -0.23 \ ATOM 71 CD2 HIS D 10 -2.920 -0.634 35.951 1.00 -0.23 \ ATOM 72 CE1 HIS D 10 -2.290 1.136 37.070 1.00 -0.23 \ ATOM 73 NE2 HIS D 10 -1.879 0.243 36.189 1.00 -0.23 \ ATOM 74 N LEU D 11 -7.751 -2.959 37.481 1.00 1.70 \ ATOM 75 CA LEU D 11 -9.172 -3.216 37.689 1.00 1.70 \ ATOM 76 C LEU D 11 -9.479 -3.828 39.057 1.00 1.70 \ ATOM 77 O LEU D 11 -10.412 -3.434 39.721 1.00 1.70 \ ATOM 78 CB LEU D 11 -9.670 -4.191 36.608 1.00 1.70 \ ATOM 79 CG LEU D 11 -9.770 -3.619 35.195 1.00 1.70 \ ATOM 80 CD1 LEU D 11 -10.228 -4.689 34.227 1.00 1.70 \ ATOM 81 CD2 LEU D 11 -10.709 -2.433 35.124 1.00 1.70 \ ATOM 82 N VAL D 12 -8.680 -4.791 39.466 1.00 0.71 \ ATOM 83 CA VAL D 12 -8.912 -5.442 40.770 1.00 0.71 \ ATOM 84 C VAL D 12 -8.675 -4.476 41.890 1.00 0.71 \ ATOM 85 O VAL D 12 -9.393 -4.549 42.932 1.00 0.71 \ ATOM 86 CB VAL D 12 -8.247 -6.805 40.915 1.00 0.71 \ ATOM 87 CG1 VAL D 12 -8.693 -7.744 39.799 1.00 0.71 \ ATOM 88 CG2 VAL D 12 -6.729 -6.732 40.880 1.00 0.71 \ ATOM 89 N GLU D 13 -7.692 -3.557 41.715 1.00 0.66 \ ATOM 90 CA GLU D 13 -7.488 -2.490 42.709 1.00 0.66 \ ATOM 91 C GLU D 13 -8.698 -1.608 42.758 1.00 0.66 \ ATOM 92 O GLU D 13 -9.126 -1.264 43.787 1.00 0.66 \ ATOM 93 CB GLU D 13 -6.239 -1.631 42.424 1.00 0.66 \ ATOM 94 N ALA D 14 -9.206 -1.196 41.603 1.00 -0.02 \ ATOM 95 CA ALA D 14 -10.465 -0.461 41.538 1.00 -0.02 \ ATOM 96 C ALA D 14 -11.727 -1.204 42.093 1.00 -0.02 \ ATOM 97 O ALA D 14 -12.532 -0.632 42.774 1.00 -0.02 \ ATOM 98 CB ALA D 14 -10.681 -0.051 40.107 1.00 -0.02 \ ATOM 99 N LEU D 15 -11.884 -2.474 41.806 1.00 1.70 \ ATOM 100 CA LEU D 15 -12.988 -3.240 42.366 1.00 1.70 \ ATOM 101 C LEU D 15 -12.900 -3.364 43.874 1.00 1.70 \ ATOM 102 O LEU D 15 -13.904 -3.270 44.577 1.00 1.70 \ ATOM 103 CB LEU D 15 -13.019 -4.607 41.727 1.00 1.70 \ ATOM 104 CG LEU D 15 -13.417 -4.630 40.299 1.00 1.70 \ ATOM 105 CD1 LEU D 15 -13.168 -6.012 39.763 1.00 1.70 \ ATOM 106 CD2 LEU D 15 -14.874 -4.215 40.142 1.00 1.70 \ ATOM 107 N TYR D 16 -11.677 -3.525 44.378 1.00 -0.22 \ ATOM 108 CA TYR D 16 -11.435 -3.556 45.832 1.00 -0.22 \ ATOM 109 C TYR D 16 -12.053 -2.354 46.556 1.00 -0.22 \ ATOM 110 O TYR D 16 -12.796 -2.501 47.549 1.00 -0.22 \ ATOM 111 CB TYR D 16 -9.915 -3.697 46.135 1.00 -0.22 \ ATOM 112 CG TYR D 16 -9.614 -3.456 47.614 1.00 -0.22 \ ATOM 113 CD1 TYR D 16 -9.827 -4.462 48.563 1.00 -0.22 \ ATOM 114 CD2 TYR D 16 -9.193 -2.214 48.071 1.00 -0.22 \ ATOM 115 CE1 TYR D 16 -9.587 -4.232 49.897 1.00 -0.22 \ ATOM 116 CE2 TYR D 16 -9.005 -1.980 49.407 1.00 -0.22 \ ATOM 117 CZ TYR D 16 -9.193 -2.999 50.312 1.00 -0.22 \ ATOM 118 OH TYR D 16 -8.943 -2.755 51.651 1.00 -0.22 \ ATOM 119 N LEU D 17 -11.772 -1.155 46.057 1.00 -0.23 \ ATOM 120 CA LEU D 17 -12.332 0.068 46.623 1.00 -0.23 \ ATOM 121 C LEU D 17 -13.823 0.249 46.301 1.00 -0.23 \ ATOM 122 O LEU D 17 -14.577 0.580 47.180 1.00 -0.23 \ ATOM 123 CB LEU D 17 -11.568 1.321 46.159 1.00 -0.23 \ ATOM 124 CG LEU D 17 -10.147 1.497 46.630 1.00 -0.23 \ ATOM 125 CD1 LEU D 17 -9.463 2.666 45.904 1.00 -0.23 \ ATOM 126 CD2 LEU D 17 -10.103 1.688 48.139 1.00 -0.23 \ ATOM 127 N VAL D 18 -14.203 0.061 45.037 1.00 0.26 \ ATOM 128 CA VAL D 18 -15.580 0.179 44.583 1.00 0.26 \ ATOM 129 C VAL D 18 -16.560 -0.674 45.402 1.00 0.26 \ ATOM 130 O VAL D 18 -17.629 -0.186 45.732 1.00 0.26 \ ATOM 131 CB VAL D 18 -15.721 -0.213 43.087 1.00 0.26 \ ATOM 132 CG1 VAL D 18 -17.179 -0.407 42.665 1.00 0.26 \ ATOM 133 CG2 VAL D 18 -15.158 0.872 42.185 1.00 0.26 \ ATOM 134 N CYS D 19 -16.192 -1.913 45.729 1.00 1.70 \ ATOM 135 CA CYS D 19 -17.151 -2.931 46.211 1.00 1.70 \ ATOM 136 C CYS D 19 -17.365 -2.981 47.712 1.00 1.70 \ ATOM 137 O CYS D 19 -18.459 -3.340 48.151 1.00 1.70 \ ATOM 138 CB CYS D 19 -16.781 -4.322 45.677 1.00 1.70 \ ATOM 139 SG CYS D 19 -16.897 -4.459 43.877 1.00 1.70 \ ATOM 140 N GLY D 20 -16.351 -2.610 48.492 1.00 -0.16 \ ATOM 141 CA GLY D 20 -16.481 -2.559 49.949 1.00 -0.16 \ ATOM 142 C GLY D 20 -16.469 -3.954 50.580 1.00 -0.16 \ ATOM 143 O GLY D 20 -15.777 -4.856 50.073 1.00 -0.16 \ ATOM 144 N GLU D 21 -17.244 -4.130 51.670 1.00 0.19 \ ATOM 145 CA GLU D 21 -17.352 -5.424 52.380 1.00 0.19 \ ATOM 146 C GLU D 21 -17.977 -6.545 51.535 1.00 0.19 \ ATOM 147 O GLU D 21 -17.788 -7.715 51.852 1.00 0.19 \ ATOM 148 CB GLU D 21 -18.116 -5.294 53.717 1.00 0.19 \ ATOM 149 N ARG D 22 -18.682 -6.185 50.458 1.00 -0.61 \ ATOM 150 CA ARG D 22 -19.253 -7.146 49.504 1.00 -0.61 \ ATOM 151 C ARG D 22 -18.223 -7.987 48.769 1.00 -0.61 \ ATOM 152 O ARG D 22 -18.468 -9.150 48.428 1.00 -0.61 \ ATOM 153 CB ARG D 22 -20.059 -6.405 48.433 1.00 -0.61 \ ATOM 154 CG ARG D 22 -21.166 -5.499 48.932 1.00 -0.61 \ ATOM 155 CD ARG D 22 -21.664 -4.621 47.792 1.00 -0.61 \ ATOM 156 NE ARG D 22 -22.184 -5.413 46.681 1.00 -0.61 \ ATOM 157 CZ ARG D 22 -22.549 -4.926 45.495 1.00 -0.61 \ ATOM 158 NH1 ARG D 22 -22.414 -3.615 45.208 1.00 -0.61 \ ATOM 159 NH2 ARG D 22 -23.039 -5.760 44.573 1.00 -0.61 \ ATOM 160 N GLY D 23 -17.079 -7.383 48.441 1.00 1.70 \ ATOM 161 CA GLY D 23 -16.052 -8.095 47.682 1.00 1.70 \ ATOM 162 C GLY D 23 -16.471 -8.135 46.231 1.00 1.70 \ ATOM 163 O GLY D 23 -17.441 -7.515 45.867 1.00 1.70 \ ATOM 164 N PHE D 24 -15.762 -8.883 45.403 1.00 1.13 \ ATOM 165 CA PHE D 24 -15.968 -8.853 43.964 1.00 1.13 \ ATOM 166 C PHE D 24 -15.508 -10.139 43.384 1.00 1.13 \ ATOM 167 O PHE D 24 -14.894 -10.937 44.103 1.00 1.13 \ ATOM 168 CB PHE D 24 -15.164 -7.710 43.361 1.00 1.13 \ ATOM 169 CG PHE D 24 -13.644 -7.808 43.587 1.00 1.13 \ ATOM 170 CD1 PHE D 24 -12.857 -8.443 42.660 1.00 1.13 \ ATOM 171 CD2 PHE D 24 -13.050 -7.181 44.642 1.00 1.13 \ ATOM 172 CE1 PHE D 24 -11.475 -8.524 42.810 1.00 1.13 \ ATOM 173 CE2 PHE D 24 -11.657 -7.257 44.818 1.00 1.13 \ ATOM 174 CZ PHE D 24 -10.888 -7.941 43.918 1.00 1.13 \ ATOM 175 N PHE D 25 -15.769 -10.343 42.096 1.00 0.51 \ ATOM 176 CA PHE D 25 -15.277 -11.493 41.339 1.00 0.51 \ ATOM 177 C PHE D 25 -14.589 -10.943 40.139 1.00 0.51 \ ATOM 178 O PHE D 25 -15.049 -9.953 39.613 1.00 0.51 \ ATOM 179 CB PHE D 25 -16.443 -12.472 40.911 1.00 0.51 \ ATOM 180 CG PHE D 25 -17.466 -11.844 39.991 1.00 0.51 \ ATOM 181 CD1 PHE D 25 -18.574 -11.177 40.504 1.00 0.51 \ ATOM 182 CD2 PHE D 25 -17.296 -11.890 38.617 1.00 0.51 \ ATOM 183 CE1 PHE D 25 -19.504 -10.584 39.657 1.00 0.51 \ ATOM 184 CE2 PHE D 25 -18.226 -11.279 37.754 1.00 0.51 \ ATOM 185 CZ PHE D 25 -19.315 -10.619 38.275 1.00 0.51 \ ATOM 186 N TYR D 26 -13.406 -11.502 39.810 1.00 -0.25 \ ATOM 187 CA TYR D 26 -12.554 -11.095 38.675 1.00 -0.25 \ ATOM 188 C TYR D 26 -12.382 -12.329 37.806 1.00 -0.25 \ ATOM 189 O TYR D 26 -12.066 -13.390 38.325 1.00 -0.25 \ ATOM 190 CB TYR D 26 -11.127 -10.636 39.115 1.00 -0.25 \ ATOM 191 CG TYR D 26 -10.264 -10.252 37.951 1.00 -0.25 \ ATOM 192 CD1 TYR D 26 -10.555 -9.117 37.206 1.00 -0.25 \ ATOM 193 CD2 TYR D 26 -9.190 -11.060 37.523 1.00 -0.25 \ ATOM 194 CE1 TYR D 26 -9.794 -8.780 36.112 1.00 -0.25 \ ATOM 195 CE2 TYR D 26 -8.436 -10.712 36.416 1.00 -0.25 \ ATOM 196 CZ TYR D 26 -8.748 -9.570 35.726 1.00 -0.25 \ ATOM 197 OH TYR D 26 -8.050 -9.209 34.611 1.00 -0.25 \ ATOM 198 N THR D 27 -12.488 -12.149 36.494 1.00 -0.98 \ ATOM 199 CA THR D 27 -12.491 -13.227 35.521 1.00 -0.98 \ ATOM 200 C THR D 27 -12.139 -12.643 34.136 1.00 -0.98 \ ATOM 201 O THR D 27 -12.901 -11.815 33.608 1.00 -0.98 \ ATOM 202 CB THR D 27 -13.908 -13.879 35.420 1.00 -0.98 \ ATOM 203 OG1 THR D 27 -14.394 -14.285 36.718 1.00 -0.98 \ ATOM 204 CG2 THR D 27 -13.877 -15.095 34.502 1.00 -0.98 \ ATOM 205 N PRO D 28 -11.005 -13.055 33.531 1.00 -0.79 \ ATOM 206 CA PRO D 28 -10.804 -12.692 32.086 1.00 -0.79 \ ATOM 207 C PRO D 28 -11.763 -13.459 31.161 1.00 -0.79 \ ATOM 208 O PRO D 28 -11.371 -13.968 30.099 1.00 -0.79 \ ATOM 209 CB PRO D 28 -9.328 -13.068 31.812 1.00 -0.79 \ ATOM 210 CG PRO D 28 -8.693 -13.208 33.169 1.00 -0.79 \ ATOM 211 CD PRO D 28 -9.793 -13.644 34.121 1.00 -0.79 \ """, "e5mt9D1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mt9D1_csv", state=0, origin=1) cmd.zoom("e5mt9D1_csv", animate=-1)