cmd.read_pdbstr("""\ ATOM 1 N GLY Y 1 -56.374 -35.585 15.650 1.00 0.33 \ ATOM 2 CA GLY Y 1 -55.524 -35.385 16.874 1.00 0.33 \ ATOM 3 C GLY Y 1 -55.362 -33.912 17.181 1.00 0.33 \ ATOM 4 O GLY Y 1 -55.576 -33.086 16.307 1.00 0.33 \ ATOM 5 N ILE Y 2 -55.004 -33.586 18.421 1.00 0.45 \ ATOM 6 CA ILE Y 2 -54.816 -32.184 18.859 1.00 0.45 \ ATOM 7 C ILE Y 2 -53.722 -31.436 18.054 1.00 0.45 \ ATOM 8 O ILE Y 2 -53.775 -30.223 17.894 1.00 0.45 \ ATOM 9 CB ILE Y 2 -54.476 -32.145 20.375 1.00 0.45 \ ATOM 10 CG1 ILE Y 2 -54.572 -30.725 20.956 1.00 0.45 \ ATOM 11 CG2 ILE Y 2 -53.098 -32.741 20.644 1.00 0.45 \ ATOM 12 CD1 ILE Y 2 -54.144 -30.639 22.405 1.00 0.45 \ ATOM 13 N VAL Y 3 -52.727 -32.183 17.581 1.00 1.09 \ ATOM 14 CA VAL Y 3 -51.640 -31.658 16.775 1.00 1.09 \ ATOM 15 C VAL Y 3 -52.211 -31.208 15.415 1.00 1.09 \ ATOM 16 O VAL Y 3 -51.704 -30.282 14.794 1.00 1.09 \ ATOM 17 CB VAL Y 3 -50.533 -32.731 16.601 1.00 1.09 \ ATOM 18 CG1 VAL Y 3 -49.344 -32.201 15.787 1.00 1.09 \ ATOM 19 CG2 VAL Y 3 -50.071 -33.254 17.970 1.00 1.09 \ ATOM 20 N GLU Y 4 -53.272 -31.870 14.961 1.00 0.21 \ ATOM 21 CA GLU Y 4 -54.096 -31.366 13.863 1.00 0.21 \ ATOM 22 C GLU Y 4 -54.690 -29.970 14.146 1.00 0.21 \ ATOM 23 O GLU Y 4 -54.273 -28.985 13.541 1.00 0.21 \ ATOM 24 CB GLU Y 4 -55.222 -32.363 13.521 1.00 0.21 \ ATOM 25 N GLN Y 5 -55.639 -29.871 15.067 1.00 0.01 \ ATOM 26 CA GLN Y 5 -56.324 -28.586 15.289 1.00 0.01 \ ATOM 27 C GLN Y 5 -55.441 -27.440 15.886 1.00 0.01 \ ATOM 28 O GLN Y 5 -55.807 -26.264 15.747 1.00 0.01 \ ATOM 29 CB GLN Y 5 -57.598 -28.794 16.119 1.00 0.01 \ ATOM 30 N CYS Y 6 -54.293 -27.751 16.523 1.00 1.71 \ ATOM 31 CA CYS Y 6 -53.471 -26.690 17.180 1.00 1.71 \ ATOM 32 C CYS Y 6 -52.139 -26.328 16.565 1.00 1.71 \ ATOM 33 O CYS Y 6 -51.665 -25.198 16.744 1.00 1.71 \ ATOM 34 CB CYS Y 6 -53.244 -26.991 18.662 1.00 1.71 \ ATOM 35 SG CYS Y 6 -54.780 -27.245 19.566 1.00 1.71 \ ATOM 36 N CYS Y 7 -51.509 -27.269 15.887 1.00 1.71 \ ATOM 37 CA CYS Y 7 -50.229 -27.031 15.247 1.00 1.71 \ ATOM 38 C CYS Y 7 -50.389 -26.769 13.713 1.00 1.71 \ ATOM 39 O CYS Y 7 -49.916 -25.767 13.210 1.00 1.71 \ ATOM 40 CB CYS Y 7 -49.320 -28.236 15.509 1.00 1.71 \ ATOM 41 SG CYS Y 7 -47.714 -28.178 14.713 1.00 1.71 \ ATOM 42 N THR Y 8 -51.038 -27.669 12.975 1.00 -0.67 \ ATOM 43 CA THR Y 8 -51.271 -27.442 11.523 1.00 -0.67 \ ATOM 44 C THR Y 8 -52.351 -26.367 11.256 1.00 -0.67 \ ATOM 45 O THR Y 8 -52.205 -25.578 10.350 1.00 -0.67 \ ATOM 46 CB THR Y 8 -51.552 -28.754 10.759 1.00 -0.67 \ ATOM 47 OG1 THR Y 8 -52.560 -29.525 11.439 1.00 -0.67 \ ATOM 48 CG2 THR Y 8 -50.255 -29.575 10.649 1.00 -0.67 \ ATOM 49 N SER Y 9 -53.389 -26.320 12.076 1.00 -0.79 \ ATOM 50 CA SER Y 9 -54.359 -25.235 12.070 1.00 -0.79 \ ATOM 51 C SER Y 9 -54.217 -24.471 13.392 1.00 -0.79 \ ATOM 52 O SER Y 9 -53.401 -24.840 14.248 1.00 -0.79 \ ATOM 53 CB SER Y 9 -55.768 -25.809 11.907 1.00 -0.79 \ ATOM 54 N ILE Y 10 -54.990 -23.408 13.557 1.00 -0.79 \ ATOM 55 CA ILE Y 10 -54.886 -22.529 14.734 1.00 -0.79 \ ATOM 56 C ILE Y 10 -55.872 -22.907 15.846 1.00 -0.79 \ ATOM 57 O ILE Y 10 -57.090 -23.105 15.628 1.00 -0.79 \ ATOM 58 CB ILE Y 10 -55.013 -21.044 14.339 1.00 -0.79 \ ATOM 59 CG1 ILE Y 10 -53.665 -20.556 13.785 1.00 -0.79 \ ATOM 60 CG2 ILE Y 10 -55.414 -20.166 15.516 1.00 -0.79 \ ATOM 61 CD1 ILE Y 10 -53.736 -19.291 12.951 1.00 -0.79 \ ATOM 62 N CYS Y 11 -55.305 -22.973 17.044 1.00 1.71 \ ATOM 63 CA CYS Y 11 -55.970 -23.436 18.248 1.00 1.71 \ ATOM 64 C CYS Y 11 -56.507 -22.169 18.914 1.00 1.71 \ ATOM 65 O CYS Y 11 -56.306 -21.081 18.412 1.00 1.71 \ ATOM 66 CB CYS Y 11 -54.914 -24.119 19.132 1.00 1.71 \ ATOM 67 SG CYS Y 11 -55.546 -25.447 20.140 1.00 1.71 \ ATOM 68 N SER Y 12 -57.232 -22.304 20.009 1.00 -0.16 \ ATOM 69 CA SER Y 12 -57.427 -21.186 20.956 1.00 -0.16 \ ATOM 70 C SER Y 12 -57.376 -21.815 22.336 1.00 -0.16 \ ATOM 71 O SER Y 12 -57.674 -23.020 22.481 1.00 -0.16 \ ATOM 72 CB SER Y 12 -58.769 -20.478 20.771 1.00 -0.16 \ ATOM 73 OG SER Y 12 -59.804 -21.183 21.466 1.00 -0.16 \ ATOM 74 N LEU Y 13 -57.060 -21.030 23.365 1.00 -0.37 \ ATOM 75 CA LEU Y 13 -56.929 -21.650 24.674 1.00 -0.37 \ ATOM 76 C LEU Y 13 -58.303 -22.238 25.057 1.00 -0.37 \ ATOM 77 O LEU Y 13 -58.371 -23.300 25.690 1.00 -0.37 \ ATOM 78 CB LEU Y 13 -56.295 -20.701 25.725 1.00 -0.37 \ ATOM 79 CG LEU Y 13 -54.840 -20.221 25.447 1.00 -0.37 \ ATOM 80 CD1 LEU Y 13 -54.379 -19.314 26.559 1.00 -0.37 \ ATOM 81 CD2 LEU Y 13 -53.796 -21.346 25.324 1.00 -0.37 \ ATOM 82 N TYR Y 14 -59.387 -21.602 24.594 1.00 -1.23 \ ATOM 83 CA TYR Y 14 -60.754 -22.105 24.826 1.00 -1.23 \ ATOM 84 C TYR Y 14 -60.947 -23.510 24.277 1.00 -1.23 \ ATOM 85 O TYR Y 14 -61.433 -24.368 24.993 1.00 -1.23 \ ATOM 86 CB TYR Y 14 -61.816 -21.128 24.300 1.00 -1.23 \ ATOM 87 CG TYR Y 14 -61.669 -19.787 24.953 1.00 -1.23 \ ATOM 88 CD1 TYR Y 14 -62.143 -19.566 26.254 1.00 -1.23 \ ATOM 89 CD2 TYR Y 14 -60.972 -18.757 24.321 1.00 -1.23 \ ATOM 90 CE1 TYR Y 14 -61.981 -18.336 26.880 1.00 -1.23 \ ATOM 91 CE2 TYR Y 14 -60.792 -17.530 24.943 1.00 -1.23 \ ATOM 92 CZ TYR Y 14 -61.299 -17.310 26.224 1.00 -1.23 \ ATOM 93 OH TYR Y 14 -61.117 -16.060 26.831 1.00 -1.23 \ ATOM 94 N GLN Y 15 -60.467 -23.761 23.064 1.00 -0.57 \ ATOM 95 CA GLN Y 15 -60.515 -25.093 22.434 1.00 -0.57 \ ATOM 96 C GLN Y 15 -59.753 -26.128 23.232 1.00 -0.57 \ ATOM 97 O GLN Y 15 -60.227 -27.268 23.400 1.00 -0.57 \ ATOM 98 CB GLN Y 15 -59.959 -25.057 21.020 1.00 -0.57 \ ATOM 99 CG GLN Y 15 -60.786 -24.210 20.047 1.00 -0.57 \ ATOM 100 CD GLN Y 15 -60.045 -23.953 18.744 1.00 -0.57 \ ATOM 101 OE1 GLN Y 15 -59.489 -22.863 18.514 1.00 -0.57 \ ATOM 102 NE2 GLN Y 15 -59.989 -24.979 17.901 1.00 -0.57 \ ATOM 103 N LEU Y 16 -58.597 -25.712 23.772 1.00 0.77 \ ATOM 104 CA LEU Y 16 -57.769 -26.625 24.587 1.00 0.77 \ ATOM 105 C LEU Y 16 -58.460 -27.043 25.850 1.00 0.77 \ ATOM 106 O LEU Y 16 -58.153 -28.138 26.383 1.00 0.77 \ ATOM 107 CB LEU Y 16 -56.392 -26.017 24.893 1.00 0.77 \ ATOM 108 CG LEU Y 16 -55.463 -25.824 23.706 1.00 0.77 \ ATOM 109 CD1 LEU Y 16 -54.243 -25.044 24.153 1.00 0.77 \ ATOM 110 CD2 LEU Y 16 -55.057 -27.147 23.086 1.00 0.77 \ ATOM 111 N GLU Y 17 -59.363 -26.203 26.376 1.00 0.32 \ ATOM 112 CA GLU Y 17 -60.168 -26.566 27.590 1.00 0.32 \ ATOM 113 C GLU Y 17 -60.805 -27.934 27.393 1.00 0.32 \ ATOM 114 O GLU Y 17 -60.924 -28.714 28.327 1.00 0.32 \ ATOM 115 CB GLU Y 17 -61.296 -25.582 27.885 1.00 0.32 \ ATOM 116 CG GLU Y 17 -61.026 -24.518 28.925 1.00 0.32 \ ATOM 117 CD GLU Y 17 -61.417 -24.926 30.317 1.00 0.32 \ ATOM 118 OE1 GLU Y 17 -60.580 -24.752 31.232 1.00 0.32 \ ATOM 119 OE2 GLU Y 17 -62.544 -25.429 30.502 1.00 0.32 \ ATOM 120 N ASN Y 18 -61.190 -28.234 26.151 1.00 -0.96 \ ATOM 121 CA ASN Y 18 -61.793 -29.533 25.847 1.00 -0.96 \ ATOM 122 C ASN Y 18 -60.947 -30.766 26.127 1.00 -0.96 \ ATOM 123 O ASN Y 18 -61.512 -31.873 26.269 1.00 -0.96 \ ATOM 124 CB ASN Y 18 -62.277 -29.598 24.386 1.00 -0.96 \ ATOM 125 CG ASN Y 18 -63.282 -28.524 24.071 1.00 -0.96 \ ATOM 126 OD1 ASN Y 18 -63.168 -27.841 23.060 1.00 -0.96 \ ATOM 127 ND2 ASN Y 18 -64.254 -28.337 24.952 1.00 -0.96 \ ATOM 128 N TYR Y 19 -59.617 -30.617 26.203 1.00 1.18 \ ATOM 129 CA TYR Y 19 -58.738 -31.754 26.470 1.00 1.18 \ ATOM 130 C TYR Y 19 -58.417 -31.960 27.942 1.00 1.18 \ ATOM 131 O TYR Y 19 -57.692 -32.876 28.250 1.00 1.18 \ ATOM 132 CB TYR Y 19 -57.443 -31.640 25.666 1.00 1.18 \ ATOM 133 CG TYR Y 19 -57.663 -31.580 24.177 1.00 1.18 \ ATOM 134 CD1 TYR Y 19 -57.637 -32.732 23.395 1.00 1.18 \ ATOM 135 CD2 TYR Y 19 -57.890 -30.374 23.538 1.00 1.18 \ ATOM 136 CE1 TYR Y 19 -57.809 -32.675 22.019 1.00 1.18 \ ATOM 137 CE2 TYR Y 19 -58.068 -30.302 22.164 1.00 1.18 \ ATOM 138 CZ TYR Y 19 -58.041 -31.464 21.412 1.00 1.18 \ ATOM 139 OH TYR Y 19 -58.242 -31.400 20.049 1.00 1.18 \ ATOM 140 N CYS Y 20 -58.976 -31.155 28.846 1.00 1.71 \ ATOM 141 CA CYS Y 20 -58.597 -31.229 30.251 1.00 1.71 \ ATOM 142 C CYS Y 20 -59.164 -32.465 30.915 1.00 1.71 \ ATOM 143 O CYS Y 20 -60.274 -32.829 30.604 1.00 1.71 \ ATOM 144 CB CYS Y 20 -59.009 -29.950 31.019 1.00 1.71 \ ATOM 145 SG CYS Y 20 -58.334 -28.388 30.363 1.00 1.71 \ ATOM 160 NE ARG f 22 -2.674 -21.874 0.258 1.00 -0.04 \ ATOM 161 CZ ARG f 22 -1.646 -21.699 1.085 1.00 -0.04 \ ATOM 162 NH1 ARG f 22 -0.597 -20.906 0.812 1.00 -0.04 \ ATOM 163 NH2 ARG f 22 -1.716 -22.320 2.249 1.00 -0.04 \ ATOM 164 N GLY f 23 -6.352 -17.447 -1.096 1.00 -1.00 \ ATOM 165 CA GLY f 23 -7.117 -16.518 -0.332 1.00 -1.00 \ ATOM 166 C GLY f 23 -7.203 -16.956 1.122 1.00 -1.00 \ ATOM 167 O GLY f 23 -6.523 -17.903 1.568 1.00 -1.00 \ ATOM 168 N PHE f 24 -8.084 -16.292 1.837 1.00 -1.00 \ ATOM 169 CA PHE f 24 -8.139 -16.457 3.281 1.00 -1.00 \ ATOM 170 C PHE f 24 -9.477 -16.028 3.777 1.00 -1.00 \ ATOM 171 O PHE f 24 -10.154 -15.298 3.083 1.00 -1.00 \ ATOM 172 CB PHE f 24 -6.951 -15.670 3.947 1.00 -1.00 \ ATOM 173 CG PHE f 24 -7.024 -14.204 3.758 1.00 -1.00 \ ATOM 174 CD1 PHE f 24 -7.788 -13.441 4.585 1.00 -1.00 \ ATOM 175 CD2 PHE f 24 -6.325 -13.573 2.720 1.00 -1.00 \ ATOM 176 CE1 PHE f 24 -7.863 -12.057 4.401 1.00 -1.00 \ ATOM 177 CE2 PHE f 24 -6.376 -12.220 2.563 1.00 -1.00 \ ATOM 178 CZ PHE f 24 -7.193 -11.454 3.373 1.00 -1.00 \ ATOM 179 N PHE f 25 -9.852 -16.507 4.972 1.00 -1.00 \ ATOM 180 CA PHE f 25 -11.055 -16.071 5.695 1.00 -1.00 \ ATOM 181 C PHE f 25 -10.580 -15.269 6.878 1.00 -1.00 \ ATOM 182 O PHE f 25 -9.764 -15.741 7.644 1.00 -1.00 \ ATOM 183 CB PHE f 25 -11.847 -17.248 6.235 1.00 -1.00 \ ATOM 184 N TYR f 26 -11.038 -14.036 7.019 1.00 -1.00 \ ATOM 185 CA TYR f 26 -10.625 -13.271 8.167 1.00 -1.00 \ ATOM 186 C TYR f 26 -11.800 -13.276 9.132 1.00 -1.00 \ ATOM 187 O TYR f 26 -12.833 -12.709 8.805 1.00 -1.00 \ ATOM 188 CB TYR f 26 -10.267 -11.822 7.766 1.00 -1.00 \ ATOM 189 CG TYR f 26 -9.837 -11.042 8.965 1.00 -1.00 \ ATOM 190 CD1 TYR f 26 -8.692 -11.390 9.637 1.00 -1.00 \ ATOM 191 CD2 TYR f 26 -10.581 -9.951 9.419 1.00 -1.00 \ ATOM 192 CE1 TYR f 26 -8.290 -10.721 10.743 1.00 -1.00 \ ATOM 193 CE2 TYR f 26 -10.206 -9.274 10.534 1.00 -1.00 \ ATOM 194 CZ TYR f 26 -9.042 -9.613 11.167 1.00 -1.00 \ ATOM 195 OH TYR f 26 -8.692 -8.934 12.293 1.00 -1.00 \ ATOM 196 N THR f 27 -11.621 -13.854 10.319 1.00 -1.00 \ ATOM 197 CA THR f 27 -12.676 -14.010 11.355 1.00 -1.00 \ ATOM 198 C THR f 27 -12.139 -13.391 12.648 1.00 -1.00 \ ATOM 199 O THR f 27 -11.465 -14.094 13.413 1.00 -1.00 \ ATOM 200 CB THR f 27 -12.973 -15.534 11.536 1.00 -1.00 \ ATOM 201 OG1 THR f 27 -13.389 -16.066 10.275 1.00 -1.00 \ ATOM 202 CG2 THR f 27 -14.050 -15.816 12.580 1.00 -1.00 \ ATOM 203 N PRO f 28 -12.399 -12.088 12.904 1.00 -1.00 \ ATOM 204 CA PRO f 28 -11.839 -11.456 14.121 1.00 -1.00 \ ATOM 205 C PRO f 28 -12.527 -11.822 15.446 1.00 -1.00 \ ATOM 206 O PRO f 28 -11.950 -11.552 16.514 1.00 -1.00 \ ATOM 207 CB PRO f 28 -12.050 -9.966 13.855 1.00 -1.00 \ ATOM 208 CG PRO f 28 -13.339 -9.952 13.135 1.00 -1.00 \ ATOM 209 CD PRO f 28 -13.381 -11.188 12.271 1.00 -1.00 \ ATOM 210 N LYS f 29 -13.756 -12.358 15.382 1.00 -1.00 \ ATOM 211 CA LYS f 29 -14.491 -12.820 16.582 1.00 -1.00 \ ATOM 212 C LYS f 29 -15.483 -13.938 16.203 1.00 -1.00 \ ATOM 213 O LYS f 29 -15.093 -15.097 15.988 1.00 -1.00 \ ATOM 214 CB LYS f 29 -15.207 -11.641 17.265 1.00 -1.00 \ """, "e5mt9Q1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mt9Q1_csv", state=0, origin=1) cmd.zoom("e5mt9Q1_csv", animate=-1)