cmd.read_pdbstr("""\ ATOM 1 N HIS d 5 -9.731 -0.094 -10.372 1.00 -0.04 \ ATOM 2 CA HIS d 5 -9.383 0.853 -9.265 1.00 -0.04 \ ATOM 3 C HIS d 5 -9.012 0.197 -7.919 1.00 -0.04 \ ATOM 4 O HIS d 5 -8.131 0.695 -7.342 1.00 -0.04 \ ATOM 5 CB HIS d 5 -10.433 1.943 -9.054 1.00 -0.04 \ ATOM 6 N LEU d 6 -9.627 -0.892 -7.439 1.00 1.15 \ ATOM 7 CA LEU d 6 -9.080 -1.559 -6.205 1.00 1.15 \ ATOM 8 C LEU d 6 -8.486 -2.894 -6.532 1.00 1.15 \ ATOM 9 O LEU d 6 -9.199 -3.819 -6.758 1.00 1.15 \ ATOM 10 CB LEU d 6 -10.121 -1.679 -5.075 1.00 1.15 \ ATOM 11 CG LEU d 6 -10.636 -0.324 -4.567 1.00 1.15 \ ATOM 12 CD1 LEU d 6 -11.924 -0.462 -3.761 1.00 1.15 \ ATOM 13 CD2 LEU d 6 -9.555 0.405 -3.782 1.00 1.15 \ ATOM 14 N CYS d 7 -7.165 -2.973 -6.556 1.00 1.70 \ ATOM 15 CA CYS d 7 -6.446 -4.152 -6.968 1.00 1.70 \ ATOM 16 C CYS d 7 -5.437 -4.650 -5.925 1.00 1.70 \ ATOM 17 O CYS d 7 -4.839 -3.875 -5.175 1.00 1.70 \ ATOM 18 CB CYS d 7 -5.737 -3.831 -8.268 1.00 1.70 \ ATOM 19 SG CYS d 7 -6.923 -3.509 -9.660 1.00 1.70 \ ATOM 20 N GLY d 8 -5.227 -5.953 -5.909 1.00 0.71 \ ATOM 21 CA GLY d 8 -4.149 -6.558 -5.119 1.00 0.71 \ ATOM 22 C GLY d 8 -4.359 -6.257 -3.660 1.00 0.71 \ ATOM 23 O GLY d 8 -5.449 -6.433 -3.166 1.00 0.71 \ ATOM 24 N SER d 9 -3.322 -5.779 -2.978 1.00 -0.48 \ ATOM 25 CA SER d 9 -3.390 -5.564 -1.529 1.00 -0.48 \ ATOM 26 C SER d 9 -4.307 -4.409 -1.172 1.00 -0.48 \ ATOM 27 O SER d 9 -4.855 -4.349 -0.042 1.00 -0.48 \ ATOM 28 CB SER d 9 -2.015 -5.326 -0.904 1.00 -0.48 \ ATOM 29 OG SER d 9 -1.390 -4.160 -1.333 1.00 -0.48 \ ATOM 30 N HIS d 10 -4.538 -3.503 -2.126 1.00 -0.23 \ ATOM 31 CA HIS d 10 -5.442 -2.377 -1.837 1.00 -0.23 \ ATOM 32 C HIS d 10 -6.891 -2.811 -1.788 1.00 -0.23 \ ATOM 33 O HIS d 10 -7.758 -2.184 -1.091 1.00 -0.23 \ ATOM 34 CB HIS d 10 -5.291 -1.283 -2.856 1.00 -0.23 \ ATOM 35 CG HIS d 10 -3.908 -0.746 -2.984 1.00 -0.23 \ ATOM 36 ND1 HIS d 10 -3.306 0.018 -2.003 1.00 -0.23 \ ATOM 37 CD2 HIS d 10 -3.001 -0.875 -3.971 1.00 -0.23 \ ATOM 38 CE1 HIS d 10 -2.088 0.330 -2.387 1.00 -0.23 \ ATOM 39 NE2 HIS d 10 -1.902 -0.161 -3.609 1.00 -0.23 \ ATOM 40 N LEU d 11 -7.190 -3.886 -2.461 1.00 1.70 \ ATOM 41 CA LEU d 11 -8.518 -4.484 -2.363 1.00 1.70 \ ATOM 42 C LEU d 11 -8.753 -5.109 -0.975 1.00 1.70 \ ATOM 43 O LEU d 11 -9.840 -4.948 -0.422 1.00 1.70 \ ATOM 44 CB LEU d 11 -8.772 -5.494 -3.495 1.00 1.70 \ ATOM 45 CG LEU d 11 -10.078 -6.304 -3.542 1.00 1.70 \ ATOM 46 CD1 LEU d 11 -11.256 -5.384 -3.304 1.00 1.70 \ ATOM 47 CD2 LEU d 11 -10.170 -7.046 -4.884 1.00 1.70 \ ATOM 48 N VAL d 12 -7.732 -5.743 -0.394 1.00 0.71 \ ATOM 49 CA VAL d 12 -7.793 -6.270 0.954 1.00 0.71 \ ATOM 50 C VAL d 12 -7.871 -5.137 2.005 1.00 0.71 \ ATOM 51 O VAL d 12 -8.639 -5.225 2.988 1.00 0.71 \ ATOM 52 CB VAL d 12 -6.605 -7.235 1.194 1.00 0.71 \ ATOM 53 CG1 VAL d 12 -6.540 -7.702 2.624 1.00 0.71 \ ATOM 54 CG2 VAL d 12 -6.775 -8.442 0.283 1.00 0.71 \ ATOM 55 N GLU d 13 -7.107 -4.072 1.807 1.00 0.67 \ ATOM 56 CA GLU d 13 -7.289 -2.854 2.654 1.00 0.67 \ ATOM 57 C GLU d 13 -8.743 -2.333 2.570 1.00 0.67 \ ATOM 58 O GLU d 13 -9.271 -1.976 3.540 1.00 0.67 \ ATOM 59 CB GLU d 13 -6.404 -1.717 2.212 1.00 0.67 \ ATOM 60 CG GLU d 13 -4.903 -1.907 2.381 1.00 0.67 \ ATOM 61 CD GLU d 13 -4.081 -0.880 1.552 1.00 0.67 \ ATOM 62 OE1 GLU d 13 -4.640 0.051 0.846 1.00 0.67 \ ATOM 63 OE2 GLU d 13 -2.842 -1.011 1.597 1.00 0.67 \ ATOM 64 N ALA d 14 -9.379 -2.268 1.413 1.00 -0.02 \ ATOM 65 CA ALA d 14 -10.754 -1.765 1.395 1.00 -0.02 \ ATOM 66 C ALA d 14 -11.742 -2.757 2.038 1.00 -0.02 \ ATOM 67 O ALA d 14 -12.706 -2.348 2.686 1.00 -0.02 \ ATOM 68 CB ALA d 14 -11.156 -1.466 -0.028 1.00 -0.02 \ ATOM 69 N LEU d 15 -11.512 -4.057 1.859 1.00 1.70 \ ATOM 70 CA LEU d 15 -12.320 -5.047 2.578 1.00 1.70 \ ATOM 71 C LEU d 15 -12.149 -4.925 4.065 1.00 1.70 \ ATOM 72 O LEU d 15 -13.150 -5.085 4.746 1.00 1.70 \ ATOM 73 CB LEU d 15 -11.971 -6.462 2.207 1.00 1.70 \ ATOM 74 CG LEU d 15 -12.624 -6.914 0.906 1.00 1.70 \ ATOM 75 CD1 LEU d 15 -11.841 -8.091 0.302 1.00 1.70 \ ATOM 76 CD2 LEU d 15 -14.074 -7.344 1.186 1.00 1.70 \ ATOM 77 N TYR d 16 -10.951 -4.589 4.560 1.00 -0.22 \ ATOM 78 CA TYR d 16 -10.777 -4.508 5.998 1.00 -0.22 \ ATOM 79 C TYR d 16 -11.491 -3.265 6.539 1.00 -0.22 \ ATOM 80 O TYR d 16 -12.040 -3.276 7.628 1.00 -0.22 \ ATOM 81 CB TYR d 16 -9.287 -4.436 6.364 1.00 -0.22 \ ATOM 82 CG TYR d 16 -9.127 -4.567 7.838 1.00 -0.22 \ ATOM 83 CD1 TYR d 16 -9.123 -5.798 8.453 1.00 -0.22 \ ATOM 84 CD2 TYR d 16 -8.980 -3.428 8.625 1.00 -0.22 \ ATOM 85 CE1 TYR d 16 -8.991 -5.901 9.861 1.00 -0.22 \ ATOM 86 CE2 TYR d 16 -8.790 -3.539 9.985 1.00 -0.22 \ ATOM 87 CZ TYR d 16 -8.822 -4.760 10.608 1.00 -0.22 \ ATOM 88 OH TYR d 16 -8.646 -4.815 12.004 1.00 -0.22 \ ATOM 89 N LEU d 17 -11.437 -2.207 5.762 1.00 -0.23 \ ATOM 90 CA LEU d 17 -12.094 -0.908 6.082 1.00 -0.23 \ ATOM 91 C LEU d 17 -13.628 -1.107 6.255 1.00 -0.23 \ ATOM 92 O LEU d 17 -14.208 -0.727 7.236 1.00 -0.23 \ ATOM 93 CB LEU d 17 -11.767 0.037 4.888 1.00 -0.23 \ ATOM 94 CG LEU d 17 -12.508 1.409 4.994 1.00 -0.23 \ ATOM 95 CD1 LEU d 17 -12.003 2.204 6.180 1.00 -0.23 \ ATOM 96 CD2 LEU d 17 -12.357 2.294 3.793 1.00 -0.23 \ ATOM 97 N VAL d 18 -14.247 -1.804 5.315 1.00 0.26 \ ATOM 98 CA VAL d 18 -15.679 -2.024 5.383 1.00 0.26 \ ATOM 99 C VAL d 18 -16.047 -3.208 6.300 1.00 0.26 \ ATOM 100 O VAL d 18 -16.955 -3.079 7.105 1.00 0.26 \ ATOM 101 CB VAL d 18 -16.277 -2.086 3.979 1.00 0.26 \ ATOM 102 CG1 VAL d 18 -17.796 -2.236 4.070 1.00 0.26 \ ATOM 103 CG2 VAL d 18 -15.890 -0.857 3.210 1.00 0.26 \ ATOM 104 N CYS d 19 -15.281 -4.293 6.278 1.00 1.70 \ ATOM 105 CA CYS d 19 -15.669 -5.550 6.946 1.00 1.70 \ ATOM 106 C CYS d 19 -14.771 -6.001 8.120 1.00 1.70 \ ATOM 107 O CYS d 19 -15.033 -7.056 8.708 1.00 1.70 \ ATOM 108 CB CYS d 19 -15.701 -6.706 5.966 1.00 1.70 \ ATOM 109 SG CYS d 19 -16.627 -6.460 4.480 1.00 1.70 \ ATOM 110 N GLY d 20 -13.724 -5.252 8.449 1.00 -0.16 \ ATOM 111 CA GLY d 20 -12.749 -5.680 9.433 1.00 -0.16 \ ATOM 112 C GLY d 20 -13.311 -5.999 10.807 1.00 -0.16 \ ATOM 113 O GLY d 20 -12.687 -6.785 11.557 1.00 -0.16 \ ATOM 114 N GLU d 21 -14.440 -5.387 11.179 1.00 0.19 \ ATOM 115 CA GLU d 21 -15.081 -5.735 12.507 1.00 0.19 \ ATOM 116 C GLU d 21 -15.959 -7.004 12.433 1.00 0.19 \ ATOM 117 O GLU d 21 -16.079 -7.724 13.436 1.00 0.19 \ ATOM 118 CB GLU d 21 -15.924 -4.570 13.000 1.00 0.19 \ ATOM 119 CG GLU d 21 -15.080 -3.328 13.217 1.00 0.19 \ ATOM 120 CD GLU d 21 -15.841 -2.243 13.942 1.00 0.19 \ ATOM 121 OE1 GLU d 21 -16.315 -1.318 13.260 1.00 0.19 \ ATOM 122 OE2 GLU d 21 -15.944 -2.348 15.195 1.00 0.19 \ ATOM 123 N ARG d 22 -16.477 -7.290 11.237 1.00 -0.61 \ ATOM 124 CA ARG d 22 -17.396 -8.416 10.975 1.00 -0.61 \ ATOM 125 C ARG d 22 -16.668 -9.660 10.434 1.00 -0.61 \ ATOM 126 O ARG d 22 -17.078 -10.825 10.650 1.00 -0.61 \ ATOM 127 CB ARG d 22 -18.418 -7.987 9.940 1.00 -0.61 \ ATOM 128 CG ARG d 22 -19.639 -7.337 10.554 1.00 -0.61 \ ATOM 129 CD ARG d 22 -20.626 -6.907 9.472 1.00 -0.61 \ ATOM 130 NE ARG d 22 -20.334 -5.542 9.029 1.00 -0.61 \ ATOM 131 CZ ARG d 22 -21.014 -4.891 8.091 1.00 -0.61 \ ATOM 132 NH1 ARG d 22 -22.016 -5.506 7.479 1.00 -0.61 \ ATOM 133 NH2 ARG d 22 -20.666 -3.630 7.750 1.00 -0.61 \ ATOM 134 N GLY d 23 -15.609 -9.434 9.678 1.00 1.70 \ ATOM 135 CA GLY d 23 -14.848 -10.576 9.130 1.00 1.70 \ ATOM 136 C GLY d 23 -15.233 -10.605 7.671 1.00 1.70 \ ATOM 137 O GLY d 23 -16.189 -9.950 7.279 1.00 1.70 \ ATOM 138 N PHE d 24 -14.454 -11.298 6.854 1.00 1.13 \ ATOM 139 CA PHE d 24 -14.770 -11.407 5.418 1.00 1.13 \ ATOM 140 C PHE d 24 -13.985 -12.604 4.809 1.00 1.13 \ ATOM 141 O PHE d 24 -12.980 -13.080 5.356 1.00 1.13 \ ATOM 142 CB PHE d 24 -14.474 -10.073 4.685 1.00 1.13 \ ATOM 143 CG PHE d 24 -13.010 -9.624 4.774 1.00 1.13 \ ATOM 144 CD1 PHE d 24 -12.077 -10.010 3.815 1.00 1.13 \ ATOM 145 CD2 PHE d 24 -12.579 -8.801 5.818 1.00 1.13 \ ATOM 146 CE1 PHE d 24 -10.711 -9.601 3.913 1.00 1.13 \ ATOM 147 CE2 PHE d 24 -11.253 -8.404 5.922 1.00 1.13 \ ATOM 148 CZ PHE d 24 -10.323 -8.808 4.970 1.00 1.13 \ ATOM 149 N PHE d 25 -14.439 -13.080 3.663 1.00 0.51 \ ATOM 150 CA PHE d 25 -13.756 -14.109 2.901 1.00 0.51 \ ATOM 151 C PHE d 25 -13.120 -13.369 1.725 1.00 0.51 \ ATOM 152 O PHE d 25 -13.779 -12.529 1.122 1.00 0.51 \ ATOM 153 CB PHE d 25 -14.742 -15.266 2.503 1.00 0.51 \ ATOM 154 N TYR d 26 -11.800 -13.545 1.517 1.00 -0.25 \ ATOM 155 CA TYR d 26 -11.113 -13.073 0.297 1.00 -0.25 \ ATOM 156 C TYR d 26 -10.687 -14.254 -0.529 1.00 -0.25 \ ATOM 157 O TYR d 26 -9.907 -15.122 -0.052 1.00 -0.25 \ ATOM 158 CB TYR d 26 -9.870 -12.198 0.612 1.00 -0.25 \ ATOM 159 CG TYR d 26 -9.045 -11.778 -0.605 1.00 -0.25 \ ATOM 160 CD1 TYR d 26 -9.469 -10.803 -1.459 1.00 -0.25 \ ATOM 161 CD2 TYR d 26 -7.803 -12.352 -0.860 1.00 -0.25 \ ATOM 162 CE1 TYR d 26 -8.706 -10.421 -2.561 1.00 -0.25 \ ATOM 163 CE2 TYR d 26 -7.023 -11.966 -1.909 1.00 -0.25 \ ATOM 164 CZ TYR d 26 -7.490 -11.040 -2.768 1.00 -0.25 \ ATOM 165 OH TYR d 26 -6.693 -10.721 -3.795 1.00 -0.25 \ ATOM 166 N THR d 27 -11.193 -14.276 -1.766 1.00 -0.98 \ ATOM 167 CA THR d 27 -11.013 -15.365 -2.690 1.00 -0.98 \ ATOM 168 C THR d 27 -10.734 -14.695 -4.045 1.00 -0.98 \ ATOM 169 O THR d 27 -11.667 -14.310 -4.747 1.00 -0.98 \ ATOM 170 CB THR d 27 -12.259 -16.275 -2.821 1.00 -0.98 \ ATOM 171 OG1 THR d 27 -12.871 -16.511 -1.541 1.00 -0.98 \ ATOM 172 CG2 THR d 27 -11.856 -17.620 -3.450 1.00 -0.98 \ ATOM 173 N PRO d 28 -9.454 -14.543 -4.405 1.00 -0.80 \ ATOM 174 CA PRO d 28 -9.115 -13.835 -5.638 1.00 -0.80 \ ATOM 175 C PRO d 28 -9.603 -14.551 -6.915 1.00 -0.80 \ ATOM 176 O PRO d 28 -9.839 -15.771 -6.891 1.00 -0.80 \ ATOM 177 CB PRO d 28 -7.585 -13.795 -5.594 1.00 -0.80 \ ATOM 178 CG PRO d 28 -7.199 -14.998 -4.813 1.00 -0.80 \ ATOM 179 CD PRO d 28 -8.246 -15.068 -3.732 1.00 -0.80 \ """, "e5mt9d1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5mt9d1_csv", state=0, origin=1) cmd.zoom("e5mt9d1_csv", animate=-1)