cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 33.802 -16.270 128.161 1.00 -1.00 \ ATOM 2 CA PHE D 1 32.848 -15.182 128.340 1.00 -1.00 \ ATOM 3 C PHE D 1 33.513 -13.859 128.014 1.00 -1.00 \ ATOM 4 O PHE D 1 34.041 -13.672 126.916 1.00 -1.00 \ ATOM 5 CB PHE D 1 32.332 -15.154 129.779 1.00 -1.00 \ ATOM 6 N VAL D 2 33.490 -12.933 128.973 1.00 -1.00 \ ATOM 7 CA VAL D 2 34.237 -11.698 128.780 1.00 -1.00 \ ATOM 8 C VAL D 2 35.736 -11.946 128.823 1.00 -1.00 \ ATOM 9 O VAL D 2 36.492 -11.244 128.160 1.00 -1.00 \ ATOM 10 CB VAL D 2 33.766 -10.576 129.723 1.00 -1.00 \ ATOM 11 CG1 VAL D 2 34.880 -9.567 130.009 1.00 -1.00 \ ATOM 12 CG2 VAL D 2 32.622 -9.859 129.083 1.00 -1.00 \ ATOM 13 N ASN D 3 36.195 -12.957 129.563 1.00 -0.46 \ ATOM 14 CA ASN D 3 37.624 -13.254 129.558 1.00 -0.46 \ ATOM 15 C ASN D 3 38.114 -13.565 128.146 1.00 -0.46 \ ATOM 16 O ASN D 3 39.152 -13.050 127.713 1.00 -0.46 \ ATOM 17 CB ASN D 3 37.928 -14.408 130.508 1.00 -0.46 \ ATOM 18 CG ASN D 3 39.361 -14.403 130.991 1.00 -0.46 \ ATOM 19 OD1 ASN D 3 39.907 -15.449 131.339 1.00 -0.46 \ ATOM 20 ND2 ASN D 3 39.985 -13.226 131.008 1.00 -0.46 \ ATOM 21 N GLN D 4 37.364 -14.390 127.409 1.00 0.23 \ ATOM 22 CA GLN D 4 37.663 -14.622 126.001 1.00 0.23 \ ATOM 23 C GLN D 4 37.525 -13.338 125.196 1.00 0.23 \ ATOM 24 O GLN D 4 38.305 -13.087 124.273 1.00 0.23 \ ATOM 25 CB GLN D 4 36.727 -15.689 125.434 1.00 0.23 \ ATOM 26 CG GLN D 4 36.676 -16.980 126.233 1.00 0.23 \ ATOM 27 CD GLN D 4 38.013 -17.687 126.284 1.00 0.23 \ ATOM 28 OE1 GLN D 4 38.880 -17.345 127.088 1.00 0.23 \ ATOM 29 NE2 GLN D 4 38.186 -18.688 125.427 1.00 0.23 \ ATOM 30 N HIS D 5 36.535 -12.514 125.532 1.00 -0.05 \ ATOM 31 CA HIS D 5 36.322 -11.259 124.815 1.00 -0.05 \ ATOM 32 C HIS D 5 37.517 -10.327 124.983 1.00 -0.05 \ ATOM 33 O HIS D 5 38.007 -9.742 124.010 1.00 -0.05 \ ATOM 34 CB HIS D 5 35.052 -10.587 125.337 1.00 -0.05 \ ATOM 35 CG HIS D 5 34.644 -9.384 124.554 1.00 -0.05 \ ATOM 36 ND1 HIS D 5 34.476 -8.141 125.126 1.00 -0.05 \ ATOM 37 CD2 HIS D 5 34.359 -9.237 123.239 1.00 -0.05 \ ATOM 38 CE1 HIS D 5 34.106 -7.279 124.196 1.00 -0.05 \ ATOM 39 NE2 HIS D 5 34.028 -7.918 123.042 1.00 -0.05 \ ATOM 40 N LEU D 6 37.986 -10.161 126.219 1.00 1.11 \ ATOM 41 CA LEU D 6 39.132 -9.293 126.464 1.00 1.11 \ ATOM 42 C LEU D 6 40.396 -9.879 125.846 1.00 1.11 \ ATOM 43 O LEU D 6 41.190 -9.154 125.240 1.00 1.11 \ ATOM 44 CB LEU D 6 39.305 -9.095 127.964 1.00 1.11 \ ATOM 45 CG LEU D 6 38.088 -8.504 128.667 1.00 1.11 \ ATOM 46 CD1 LEU D 6 38.392 -8.314 130.132 1.00 1.11 \ ATOM 47 CD2 LEU D 6 37.685 -7.195 128.012 1.00 1.11 \ ATOM 48 N CYS D 7 40.581 -11.193 125.968 1.00 1.72 \ ATOM 49 CA CYS D 7 41.708 -11.841 125.308 1.00 1.72 \ ATOM 50 C CYS D 7 41.683 -11.583 123.806 1.00 1.72 \ ATOM 51 O CYS D 7 42.712 -11.247 123.206 1.00 1.72 \ ATOM 52 CB CYS D 7 41.697 -13.337 125.626 1.00 1.72 \ ATOM 53 SG CYS D 7 42.994 -14.261 124.792 1.00 1.72 \ ATOM 54 N GLY D 8 40.505 -11.695 123.191 1.00 0.65 \ ATOM 55 CA GLY D 8 40.386 -11.454 121.764 1.00 0.65 \ ATOM 56 C GLY D 8 40.793 -10.052 121.354 1.00 0.65 \ ATOM 57 O GLY D 8 41.355 -9.862 120.270 1.00 0.65 \ ATOM 58 N SER D 9 40.512 -9.051 122.203 1.00 -0.48 \ ATOM 59 CA SER D 9 40.957 -7.688 121.918 1.00 -0.48 \ ATOM 60 C SER D 9 42.476 -7.628 121.833 1.00 -0.48 \ ATOM 61 O SER D 9 43.042 -6.998 120.926 1.00 -0.48 \ ATOM 62 CB SER D 9 40.469 -6.744 123.015 1.00 -0.48 \ ATOM 63 OG SER D 9 41.001 -5.447 122.800 1.00 -0.48 \ ATOM 64 N HIS D 10 43.158 -8.287 122.770 1.00 -0.22 \ ATOM 65 CA HIS D 10 44.612 -8.329 122.731 1.00 -0.22 \ ATOM 66 C HIS D 10 45.105 -9.144 121.543 1.00 -0.22 \ ATOM 67 O HIS D 10 46.132 -8.811 120.949 1.00 -0.22 \ ATOM 68 CB HIS D 10 45.163 -8.870 124.051 1.00 -0.22 \ ATOM 69 CG HIS D 10 44.969 -7.942 125.214 1.00 -0.22 \ ATOM 70 ND1 HIS D 10 45.899 -6.985 125.550 1.00 -0.22 \ ATOM 71 CD2 HIS D 10 43.957 -7.809 126.110 1.00 -0.22 \ ATOM 72 CE1 HIS D 10 45.485 -6.321 126.613 1.00 -0.22 \ ATOM 73 NE2 HIS D 10 44.301 -6.792 126.978 1.00 -0.22 \ ATOM 74 N LEU D 11 44.391 -10.221 121.178 1.00 1.72 \ ATOM 75 CA LEU D 11 44.806 -11.019 120.020 1.00 1.72 \ ATOM 76 C LEU D 11 44.757 -10.206 118.733 1.00 1.72 \ ATOM 77 O LEU D 11 45.663 -10.307 117.900 1.00 1.72 \ ATOM 78 CB LEU D 11 43.947 -12.279 119.884 1.00 1.72 \ ATOM 79 CG LEU D 11 44.250 -13.433 120.838 1.00 1.72 \ ATOM 80 CD1 LEU D 11 43.169 -14.485 120.690 1.00 1.72 \ ATOM 81 CD2 LEU D 11 45.621 -14.038 120.557 1.00 1.72 \ ATOM 82 N VAL D 12 43.694 -9.426 118.516 0.61 0.65 \ ATOM 83 CA VAL D 12 43.658 -8.680 117.261 0.61 0.65 \ ATOM 84 C VAL D 12 44.737 -7.608 117.245 0.61 0.65 \ ATOM 85 O VAL D 12 45.304 -7.304 116.186 0.61 0.65 \ ATOM 86 CB VAL D 12 42.257 -8.133 116.926 0.61 0.65 \ ATOM 87 CG1 VAL D 12 41.273 -9.281 116.735 0.61 0.65 \ ATOM 88 CG2 VAL D 12 41.781 -7.162 117.987 0.61 0.65 \ ATOM 89 N GLU D 13 45.067 -7.046 118.412 0.61 0.69 \ ATOM 90 CA GLU D 13 46.188 -6.114 118.495 0.61 0.69 \ ATOM 91 C GLU D 13 47.497 -6.800 118.127 0.61 0.69 \ ATOM 92 O GLU D 13 48.315 -6.245 117.389 0.61 0.69 \ ATOM 93 CB GLU D 13 46.274 -5.539 119.906 0.61 0.69 \ ATOM 94 CG GLU D 13 45.238 -4.479 120.184 0.61 0.69 \ ATOM 95 CD GLU D 13 45.613 -3.613 121.368 0.61 0.69 \ ATOM 96 OE1 GLU D 13 45.736 -4.154 122.487 0.61 0.69 \ ATOM 97 OE2 GLU D 13 45.808 -2.395 121.172 0.61 0.69 \ ATOM 98 N ALA D 14 47.696 -8.020 118.619 1.00 -0.05 \ ATOM 99 CA ALA D 14 48.909 -8.775 118.345 1.00 -0.05 \ ATOM 100 C ALA D 14 48.986 -9.162 116.876 1.00 -0.05 \ ATOM 101 O ALA D 14 50.043 -9.027 116.256 1.00 -0.05 \ ATOM 102 CB ALA D 14 48.958 -10.014 119.237 1.00 -0.05 \ ATOM 103 N LEU D 15 47.880 -9.640 116.294 1.00 1.72 \ ATOM 104 CA LEU D 15 47.890 -9.989 114.873 1.00 1.72 \ ATOM 105 C LEU D 15 48.155 -8.767 114.009 1.00 1.72 \ ATOM 106 O LEU D 15 48.842 -8.858 112.990 1.00 1.72 \ ATOM 107 CB LEU D 15 46.560 -10.605 114.468 1.00 1.72 \ ATOM 108 CG LEU D 15 46.242 -11.986 115.030 1.00 1.72 \ ATOM 109 CD1 LEU D 15 44.897 -12.420 114.485 1.00 1.72 \ ATOM 110 CD2 LEU D 15 47.334 -13.017 114.655 1.00 1.72 \ ATOM 111 N TYR D 16 47.605 -7.613 114.392 1.00 -0.23 \ ATOM 112 CA TYR D 16 47.866 -6.404 113.621 1.00 -0.23 \ ATOM 113 C TYR D 16 49.360 -6.151 113.511 1.00 -0.23 \ ATOM 114 O TYR D 16 49.868 -5.837 112.425 1.00 -0.23 \ ATOM 115 CB TYR D 16 47.147 -5.213 114.251 1.00 -0.23 \ ATOM 116 CG TYR D 16 47.419 -3.913 113.538 1.00 -0.23 \ ATOM 117 CD1 TYR D 16 46.770 -3.606 112.352 1.00 -0.23 \ ATOM 118 CD2 TYR D 16 48.303 -2.983 114.058 1.00 -0.23 \ ATOM 119 CE1 TYR D 16 46.987 -2.416 111.698 1.00 -0.23 \ ATOM 120 CE2 TYR D 16 48.536 -1.783 113.408 1.00 -0.23 \ ATOM 121 CZ TYR D 16 47.884 -1.512 112.228 1.00 -0.23 \ ATOM 122 OH TYR D 16 48.099 -0.319 111.574 1.00 -0.23 \ ATOM 123 N LEU D 17 50.078 -6.295 114.627 1.00 -0.22 \ ATOM 124 CA LEU D 17 51.523 -6.097 114.632 1.00 -0.22 \ ATOM 125 C LEU D 17 52.237 -7.220 113.890 1.00 -0.22 \ ATOM 126 O LEU D 17 53.072 -6.966 113.011 1.00 -0.22 \ ATOM 127 CB LEU D 17 52.025 -6.038 116.074 1.00 -0.22 \ ATOM 128 CG LEU D 17 53.531 -5.842 116.261 1.00 -0.22 \ ATOM 129 CD1 LEU D 17 53.986 -4.492 115.715 1.00 -0.22 \ ATOM 130 CD2 LEU D 17 53.916 -5.977 117.726 1.00 -0.22 \ ATOM 131 N VAL D 18 51.913 -8.473 114.224 1.00 0.22 \ ATOM 132 CA VAL D 18 52.684 -9.603 113.714 1.00 0.22 \ ATOM 133 C VAL D 18 52.514 -9.743 112.211 1.00 0.22 \ ATOM 134 O VAL D 18 53.467 -10.051 111.486 1.00 0.22 \ ATOM 135 CB VAL D 18 52.267 -10.890 114.448 1.00 0.22 \ ATOM 136 CG1 VAL D 18 52.744 -12.103 113.689 1.00 0.22 \ ATOM 137 CG2 VAL D 18 52.815 -10.867 115.871 1.00 0.22 \ ATOM 138 N CYS D 19 51.301 -9.534 111.717 1.00 1.72 \ ATOM 139 CA CYS D 19 51.004 -9.866 110.335 1.00 1.72 \ ATOM 140 C CYS D 19 51.456 -8.802 109.346 1.00 1.72 \ ATOM 141 O CYS D 19 51.507 -9.092 108.146 1.00 1.72 \ ATOM 142 CB CYS D 19 49.519 -10.162 110.176 1.00 1.72 \ ATOM 143 SG CYS D 19 48.985 -11.549 111.208 1.00 1.72 \ ATOM 144 N GLY D 20 51.809 -7.604 109.806 1.00 -0.22 \ ATOM 145 CA GLY D 20 52.338 -6.607 108.889 1.00 -0.22 \ ATOM 146 C GLY D 20 51.359 -6.309 107.774 1.00 -0.22 \ ATOM 147 O GLY D 20 50.139 -6.289 107.970 1.00 -0.22 \ ATOM 148 N GLU D 21 51.896 -6.098 106.571 1.00 0.20 \ ATOM 149 CA GLU D 21 51.040 -5.782 105.434 1.00 0.20 \ ATOM 150 C GLU D 21 50.206 -6.973 104.973 1.00 0.20 \ ATOM 151 O GLU D 21 49.190 -6.768 104.300 1.00 0.20 \ ATOM 152 CB GLU D 21 51.864 -5.186 104.290 1.00 0.20 \ ATOM 153 CG GLU D 21 52.548 -3.868 104.651 1.00 0.20 \ ATOM 154 CD GLU D 21 53.259 -3.234 103.473 1.00 0.20 \ ATOM 155 OE1 GLU D 21 52.621 -3.078 102.410 1.00 0.20 \ ATOM 156 OE2 GLU D 21 54.453 -2.886 103.609 1.00 0.20 \ ATOM 157 N ARG D 22 50.605 -8.205 105.323 1.00 -0.65 \ ATOM 158 CA ARG D 22 49.780 -9.375 105.022 1.00 -0.65 \ ATOM 159 C ARG D 22 48.380 -9.210 105.591 1.00 -0.65 \ ATOM 160 O ARG D 22 47.389 -9.610 104.970 1.00 -0.65 \ ATOM 161 CB ARG D 22 50.399 -10.629 105.642 1.00 -0.65 \ ATOM 162 CG ARG D 22 51.581 -11.236 104.928 1.00 -0.65 \ ATOM 163 CD ARG D 22 51.947 -12.553 105.600 1.00 -0.65 \ ATOM 164 NE ARG D 22 52.695 -12.351 106.839 1.00 -0.65 \ ATOM 165 CZ ARG D 22 52.989 -13.322 107.698 1.00 -0.65 \ ATOM 166 NH1 ARG D 22 52.585 -14.562 107.461 1.00 -0.65 \ ATOM 167 NH2 ARG D 22 53.678 -13.052 108.798 1.00 -0.65 \ ATOM 168 N GLY D 23 48.284 -8.637 106.772 1.00 1.72 \ ATOM 169 CA GLY D 23 47.013 -8.544 107.440 1.00 1.72 \ ATOM 170 C GLY D 23 46.522 -9.907 107.900 1.00 1.72 \ ATOM 171 O GLY D 23 47.224 -10.921 107.859 1.00 1.72 \ ATOM 172 N PHE D 24 45.271 -9.910 108.336 1.00 1.10 \ ATOM 173 CA PHE D 24 44.687 -11.095 108.932 1.00 1.10 \ ATOM 174 C PHE D 24 43.182 -11.049 108.732 1.00 1.10 \ ATOM 175 O PHE D 24 42.602 -10.002 108.436 1.00 1.10 \ ATOM 176 CB PHE D 24 45.040 -11.198 110.420 1.00 1.10 \ ATOM 177 CG PHE D 24 44.553 -10.033 111.239 1.00 1.10 \ ATOM 178 CD1 PHE D 24 45.298 -8.865 111.318 1.00 1.10 \ ATOM 179 CD2 PHE D 24 43.351 -10.101 111.922 1.00 1.10 \ ATOM 180 CE1 PHE D 24 44.852 -7.786 112.066 1.00 1.10 \ ATOM 181 CE2 PHE D 24 42.892 -9.024 112.669 1.00 1.10 \ ATOM 182 CZ PHE D 24 43.648 -7.868 112.746 1.00 1.10 \ ATOM 183 N PHE D 25 42.557 -12.209 108.875 1.00 0.52 \ ATOM 184 CA PHE D 25 41.107 -12.326 108.838 1.00 0.52 \ ATOM 185 C PHE D 25 40.682 -12.829 110.207 1.00 0.52 \ ATOM 186 O PHE D 25 41.025 -13.952 110.592 1.00 0.52 \ ATOM 187 CB PHE D 25 40.664 -13.291 107.739 1.00 0.52 \ ATOM 188 N TYR D 26 39.965 -11.994 110.948 1.00 -0.25 \ ATOM 189 CA TYR D 26 39.505 -12.376 112.272 1.00 -0.25 \ ATOM 190 C TYR D 26 38.051 -12.835 112.235 1.00 -0.25 \ ATOM 191 O TYR D 26 37.140 -12.021 112.099 1.00 -0.25 \ ATOM 192 CB TYR D 26 39.677 -11.224 113.261 1.00 -0.25 \ ATOM 193 CG TYR D 26 39.549 -11.678 114.690 1.00 -0.25 \ ATOM 194 CD1 TYR D 26 40.574 -12.389 115.301 1.00 -0.25 \ ATOM 195 CD2 TYR D 26 38.400 -11.418 115.424 1.00 -0.25 \ ATOM 196 CE1 TYR D 26 40.467 -12.817 116.606 1.00 -0.25 \ ATOM 197 CE2 TYR D 26 38.280 -11.846 116.735 1.00 -0.25 \ ATOM 198 CZ TYR D 26 39.318 -12.546 117.319 1.00 -0.25 \ ATOM 199 OH TYR D 26 39.215 -12.975 118.621 1.00 -0.25 \ """, "e5udpD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5udpD1_csv", state=0, origin=1) cmd.zoom("e5udpD1_csv", animate=-1)