cmd.read_pdbstr("""\ ATOM 1 N VAL V 2 9.689 16.663 40.852 1.00 -1.00 \ ATOM 2 CA VAL V 2 10.295 15.375 41.170 1.00 -1.00 \ ATOM 3 C VAL V 2 9.573 14.222 40.472 1.00 -1.00 \ ATOM 4 O VAL V 2 8.345 14.200 40.386 1.00 -1.00 \ ATOM 5 CB VAL V 2 10.300 15.114 42.690 1.00 -1.00 \ ATOM 6 N ASN V 3 10.353 13.271 39.969 1.00 -0.47 \ ATOM 7 CA ASN V 3 9.810 12.087 39.315 1.00 -0.47 \ ATOM 8 C ASN V 3 8.993 11.232 40.280 1.00 -0.47 \ ATOM 9 O ASN V 3 8.039 10.567 39.879 1.00 -0.47 \ ATOM 10 CB ASN V 3 10.936 11.254 38.701 1.00 -0.47 \ ATOM 11 N GLN V 4 9.380 11.250 41.552 1.00 0.23 \ ATOM 12 CA GLN V 4 8.681 10.488 42.582 1.00 0.23 \ ATOM 13 C GLN V 4 7.267 11.011 42.810 1.00 0.23 \ ATOM 14 O GLN V 4 6.342 10.232 43.042 1.00 0.23 \ ATOM 15 CB GLN V 4 9.468 10.516 43.894 1.00 0.23 \ ATOM 16 N HIS V 5 7.100 12.328 42.750 1.00 -0.04 \ ATOM 17 CA HIS V 5 5.781 12.924 42.923 1.00 -0.04 \ ATOM 18 C HIS V 5 4.839 12.500 41.803 1.00 -0.04 \ ATOM 19 O HIS V 5 3.667 12.218 42.042 1.00 -0.04 \ ATOM 20 CB HIS V 5 5.869 14.448 42.971 1.00 -0.04 \ ATOM 21 CG HIS V 5 4.550 15.116 43.202 1.00 -0.04 \ ATOM 22 ND1 HIS V 5 3.783 14.880 44.322 1.00 -0.04 \ ATOM 23 CD2 HIS V 5 3.851 15.994 42.445 1.00 -0.04 \ ATOM 24 CE1 HIS V 5 2.674 15.595 44.252 1.00 -0.04 \ ATOM 25 NE2 HIS V 5 2.691 16.280 43.123 1.00 -0.04 \ ATOM 26 N LEU V 6 5.363 12.463 40.581 1.00 1.14 \ ATOM 27 CA LEU V 6 4.587 12.043 39.421 1.00 1.14 \ ATOM 28 C LEU V 6 4.253 10.558 39.503 1.00 1.14 \ ATOM 29 O LEU V 6 3.117 10.156 39.259 1.00 1.14 \ ATOM 30 CB LEU V 6 5.346 12.343 38.125 1.00 1.14 \ ATOM 31 CG LEU V 6 5.674 13.805 37.808 1.00 1.14 \ ATOM 32 CD1 LEU V 6 6.368 13.911 36.462 1.00 1.14 \ ATOM 33 CD2 LEU V 6 4.417 14.663 37.820 1.00 1.14 \ ATOM 34 N CYS V 7 5.254 9.749 39.838 1.00 1.71 \ ATOM 35 CA CYS V 7 5.067 8.312 40.013 1.00 1.71 \ ATOM 36 C CYS V 7 4.003 7.998 41.062 1.00 1.71 \ ATOM 37 O CYS V 7 3.191 7.091 40.881 1.00 1.71 \ ATOM 38 CB CYS V 7 6.392 7.648 40.399 1.00 1.71 \ ATOM 39 SG CYS V 7 6.263 5.890 40.800 1.00 1.71 \ ATOM 40 N GLY V 8 4.015 8.754 42.157 1.00 0.69 \ ATOM 41 CA GLY V 8 3.046 8.579 43.224 1.00 0.69 \ ATOM 42 C GLY V 8 1.622 8.731 42.728 1.00 0.69 \ ATOM 43 O GLY V 8 0.722 8.010 43.163 1.00 0.69 \ ATOM 44 N SER V 9 1.421 9.680 41.817 1.00 -0.48 \ ATOM 45 CA SER V 9 0.114 9.907 41.211 1.00 -0.48 \ ATOM 46 C SER V 9 -0.396 8.671 40.467 1.00 -0.48 \ ATOM 47 O SER V 9 -1.567 8.314 40.580 1.00 -0.48 \ ATOM 48 CB SER V 9 0.172 11.101 40.254 1.00 -0.48 \ ATOM 49 OG SER V 9 -1.041 11.237 39.531 1.00 -0.48 \ ATOM 50 N HIS V 10 0.483 8.020 39.711 1.00 -0.23 \ ATOM 51 CA HIS V 10 0.107 6.808 38.985 1.00 -0.23 \ ATOM 52 C HIS V 10 -0.094 5.627 39.942 1.00 -0.23 \ ATOM 53 O HIS V 10 -0.974 4.794 39.732 1.00 -0.23 \ ATOM 54 CB HIS V 10 1.160 6.453 37.927 1.00 -0.23 \ ATOM 55 CG HIS V 10 1.209 7.404 36.768 1.00 -0.23 \ ATOM 56 ND1 HIS V 10 0.395 7.280 35.663 1.00 -0.23 \ ATOM 57 CD2 HIS V 10 1.987 8.491 36.539 1.00 -0.23 \ ATOM 58 CE1 HIS V 10 0.664 8.249 34.806 1.00 -0.23 \ ATOM 59 NE2 HIS V 10 1.626 8.996 35.312 1.00 -0.23 \ ATOM 60 N LEU V 11 0.716 5.567 40.993 1.00 1.71 \ ATOM 61 CA LEU V 11 0.619 4.482 41.962 1.00 1.71 \ ATOM 62 C LEU V 11 -0.742 4.461 42.642 1.00 1.71 \ ATOM 63 O LEU V 11 -1.355 3.404 42.789 1.00 1.71 \ ATOM 64 CB LEU V 11 1.724 4.596 43.010 1.00 1.71 \ ATOM 65 CG LEU V 11 3.096 4.055 42.613 1.00 1.71 \ ATOM 66 CD1 LEU V 11 4.095 4.234 43.745 1.00 1.71 \ ATOM 67 CD2 LEU V 11 2.982 2.590 42.226 1.00 1.71 \ ATOM 68 N VAL V 12 -1.214 5.639 43.040 1.00 0.69 \ ATOM 69 CA VAL V 12 -2.482 5.760 43.749 1.00 0.69 \ ATOM 70 C VAL V 12 -3.656 5.400 42.842 1.00 0.69 \ ATOM 71 O VAL V 12 -4.642 4.809 43.292 1.00 0.69 \ ATOM 72 CB VAL V 12 -2.680 7.185 44.305 1.00 0.69 \ ATOM 73 CG1 VAL V 12 -4.157 7.478 44.524 1.00 0.69 \ ATOM 74 CG2 VAL V 12 -1.897 7.358 45.599 1.00 0.69 \ ATOM 75 N GLU V 13 -3.538 5.750 41.566 1.00 0.66 \ ATOM 76 CA GLU V 13 -4.540 5.375 40.578 1.00 0.66 \ ATOM 77 C GLU V 13 -4.601 3.858 40.455 1.00 0.66 \ ATOM 78 O GLU V 13 -5.678 3.272 40.378 1.00 0.66 \ ATOM 79 CB GLU V 13 -4.224 6.005 39.217 1.00 0.66 \ ATOM 80 CG GLU V 13 -5.047 5.443 38.064 1.00 0.66 \ ATOM 81 CD GLU V 13 -6.494 5.914 38.083 1.00 0.66 \ ATOM 82 OE1 GLU V 13 -6.756 7.058 37.634 1.00 0.66 \ ATOM 83 OE2 GLU V 13 -7.367 5.147 38.547 1.00 0.66 \ ATOM 84 N ALA V 14 -3.430 3.232 40.441 1.00 -0.03 \ ATOM 85 CA ALA V 14 -3.331 1.783 40.331 1.00 -0.03 \ ATOM 86 C ALA V 14 -3.912 1.101 41.569 1.00 -0.03 \ ATOM 87 O ALA V 14 -4.634 0.112 41.449 1.00 -0.03 \ ATOM 88 CB ALA V 14 -1.884 1.362 40.112 1.00 -0.03 \ ATOM 89 N LEU V 15 -3.594 1.625 42.753 1.00 1.71 \ ATOM 90 CA LEU V 15 -4.124 1.064 43.998 1.00 1.71 \ ATOM 91 C LEU V 15 -5.646 1.138 44.043 1.00 1.71 \ ATOM 92 O LEU V 15 -6.305 0.228 44.552 1.00 1.71 \ ATOM 93 CB LEU V 15 -3.538 1.776 45.220 1.00 1.71 \ ATOM 94 CG LEU V 15 -2.071 1.506 45.550 1.00 1.71 \ ATOM 95 CD1 LEU V 15 -1.596 2.436 46.662 1.00 1.71 \ ATOM 96 CD2 LEU V 15 -1.862 0.056 45.939 1.00 1.71 \ ATOM 97 N TYR V 16 -6.196 2.223 43.505 1.00 -0.22 \ ATOM 98 CA TYR V 16 -7.639 2.421 43.484 1.00 -0.22 \ ATOM 99 C TYR V 16 -8.339 1.303 42.710 1.00 -0.22 \ ATOM 100 O TYR V 16 -9.393 0.815 43.122 1.00 -0.22 \ ATOM 101 CB TYR V 16 -7.978 3.782 42.873 1.00 -0.22 \ ATOM 102 CG TYR V 16 -9.459 4.038 42.728 1.00 -0.22 \ ATOM 103 CD1 TYR V 16 -10.224 4.426 43.821 1.00 -0.22 \ ATOM 104 CD2 TYR V 16 -10.094 3.886 41.503 1.00 -0.22 \ ATOM 105 CE1 TYR V 16 -11.578 4.660 43.697 1.00 -0.22 \ ATOM 106 CE2 TYR V 16 -11.447 4.118 41.370 1.00 -0.22 \ ATOM 107 CZ TYR V 16 -12.184 4.506 42.469 1.00 -0.22 \ ATOM 108 OH TYR V 16 -13.533 4.738 42.343 1.00 -0.22 \ ATOM 109 N LEU V 17 -7.739 0.889 41.597 1.00 -0.23 \ ATOM 110 CA LEU V 17 -8.313 -0.168 40.770 1.00 -0.23 \ ATOM 111 C LEU V 17 -8.100 -1.552 41.378 1.00 -0.23 \ ATOM 112 O LEU V 17 -9.033 -2.349 41.459 1.00 -0.23 \ ATOM 113 CB LEU V 17 -7.724 -0.126 39.356 1.00 -0.23 \ ATOM 114 CG LEU V 17 -8.067 1.107 38.516 1.00 -0.23 \ ATOM 115 CD1 LEU V 17 -7.311 1.092 37.195 1.00 -0.23 \ ATOM 116 CD2 LEU V 17 -9.571 1.212 38.282 1.00 -0.23 \ ATOM 117 N VAL V 18 -6.878 -1.824 41.823 1.00 0.24 \ ATOM 118 CA VAL V 18 -6.518 -3.155 42.307 1.00 0.24 \ ATOM 119 C VAL V 18 -7.191 -3.522 43.623 1.00 0.24 \ ATOM 120 O VAL V 18 -7.670 -4.640 43.785 1.00 0.24 \ ATOM 121 CB VAL V 18 -4.994 -3.288 42.504 1.00 0.24 \ ATOM 122 CG1 VAL V 18 -4.664 -4.601 43.197 1.00 0.24 \ ATOM 123 CG2 VAL V 18 -4.270 -3.175 41.175 1.00 0.24 \ ATOM 124 N CYS V 19 -7.236 -2.575 44.552 1.00 1.71 \ ATOM 125 CA CYS V 19 -7.722 -2.846 45.900 1.00 1.71 \ ATOM 126 C CYS V 19 -9.242 -2.964 45.957 1.00 1.71 \ ATOM 127 O CYS V 19 -9.787 -3.631 46.838 1.00 1.71 \ ATOM 128 CB CYS V 19 -7.236 -1.761 46.857 1.00 1.71 \ ATOM 129 SG CYS V 19 -5.441 -1.729 47.017 1.00 1.71 \ ATOM 130 N GLY V 20 -9.914 -2.317 45.010 1.00 -0.18 \ ATOM 131 CA GLY V 20 -11.361 -2.385 44.898 1.00 -0.18 \ ATOM 132 C GLY V 20 -12.114 -2.020 46.162 1.00 -0.18 \ ATOM 133 O GLY V 20 -11.944 -0.931 46.707 1.00 -0.18 \ ATOM 134 N GLU V 21 -12.944 -2.944 46.634 1.00 0.19 \ ATOM 135 CA GLU V 21 -13.798 -2.683 47.784 1.00 0.19 \ ATOM 136 C GLU V 21 -12.981 -2.558 49.062 1.00 0.19 \ ATOM 137 O GLU V 21 -13.376 -1.856 49.990 1.00 0.19 \ ATOM 138 CB GLU V 21 -14.845 -3.788 47.934 1.00 0.19 \ ATOM 139 N ARG V 22 -11.832 -3.226 49.098 1.00 -0.63 \ ATOM 140 CA ARG V 22 -10.973 -3.197 50.275 1.00 -0.63 \ ATOM 141 C ARG V 22 -10.465 -1.789 50.558 1.00 -0.63 \ ATOM 142 O ARG V 22 -10.191 -1.436 51.704 1.00 -0.63 \ ATOM 143 CB ARG V 22 -9.780 -4.139 50.100 1.00 -0.63 \ ATOM 144 CG ARG V 22 -10.142 -5.589 49.854 1.00 -0.63 \ ATOM 145 CD ARG V 22 -8.903 -6.470 49.930 1.00 -0.63 \ ATOM 146 NE ARG V 22 -8.154 -6.486 48.676 1.00 -0.63 \ ATOM 147 CZ ARG V 22 -6.969 -7.071 48.524 1.00 -0.63 \ ATOM 148 NH1 ARG V 22 -6.393 -7.682 49.552 1.00 -0.63 \ ATOM 149 NH2 ARG V 22 -6.357 -7.042 47.348 1.00 -0.63 \ ATOM 150 N GLY V 23 -10.335 -0.984 49.511 1.00 1.71 \ ATOM 151 CA GLY V 23 -9.771 0.340 49.669 1.00 1.71 \ ATOM 152 C GLY V 23 -8.279 0.223 49.904 1.00 1.71 \ ATOM 153 O GLY V 23 -7.712 -0.863 49.794 1.00 1.71 \ ATOM 154 N PHE V 24 -7.638 1.334 50.243 1.00 1.12 \ ATOM 155 CA PHE V 24 -6.196 1.326 50.441 1.00 1.12 \ ATOM 156 C PHE V 24 -5.729 2.516 51.260 1.00 1.12 \ ATOM 157 O PHE V 24 -6.507 3.408 51.590 1.00 1.12 \ ATOM 158 CB PHE V 24 -5.467 1.314 49.091 1.00 1.12 \ ATOM 159 CG PHE V 24 -5.626 2.583 48.298 1.00 1.12 \ ATOM 160 CD1 PHE V 24 -6.741 2.787 47.505 1.00 1.12 \ ATOM 161 CD2 PHE V 24 -4.656 3.571 48.346 1.00 1.12 \ ATOM 162 CE1 PHE V 24 -6.889 3.953 46.771 1.00 1.12 \ ATOM 163 CE2 PHE V 24 -4.797 4.741 47.619 1.00 1.12 \ ATOM 164 CZ PHE V 24 -5.915 4.932 46.829 1.00 1.12 \ ATOM 165 N PHE V 25 -4.447 2.498 51.599 1.00 0.52 \ ATOM 166 CA PHE V 25 -3.807 3.577 52.332 1.00 0.52 \ ATOM 167 C PHE V 25 -2.615 4.104 51.548 1.00 0.52 \ ATOM 168 O PHE V 25 -1.925 3.337 50.876 1.00 0.52 \ ATOM 169 CB PHE V 25 -3.347 3.093 53.700 1.00 0.52 \ ATOM 170 CG PHE V 25 -2.513 1.844 53.646 1.00 0.52 \ ATOM 171 CD1 PHE V 25 -1.148 1.918 53.422 1.00 0.52 \ ATOM 172 CD2 PHE V 25 -3.092 0.599 53.814 1.00 0.52 \ ATOM 173 CE1 PHE V 25 -0.375 0.773 53.373 1.00 0.52 \ ATOM 174 CE2 PHE V 25 -2.323 -0.551 53.767 1.00 0.52 \ ATOM 175 CZ PHE V 25 -0.963 -0.463 53.546 1.00 0.52 \ ATOM 176 N TYR V 26 -2.379 5.409 51.611 1.00 -0.25 \ ATOM 177 CA TYR V 26 -1.184 5.964 50.997 1.00 -0.25 \ ATOM 178 C TYR V 26 -0.551 7.034 51.879 1.00 -0.25 \ ATOM 179 O TYR V 26 -1.227 7.949 52.347 1.00 -0.25 \ ATOM 180 CB TYR V 26 -1.499 6.543 49.619 1.00 -0.25 \ ATOM 181 CG TYR V 26 -0.257 6.908 48.844 1.00 -0.25 \ ATOM 182 CD1 TYR V 26 0.358 5.983 48.015 1.00 -0.25 \ ATOM 183 CD2 TYR V 26 0.309 8.170 48.950 1.00 -0.25 \ ATOM 184 CE1 TYR V 26 1.496 6.306 47.305 1.00 -0.25 \ ATOM 185 CE2 TYR V 26 1.448 8.500 48.247 1.00 -0.25 \ ATOM 186 CZ TYR V 26 2.038 7.564 47.425 1.00 -0.25 \ ATOM 187 OH TYR V 26 3.173 7.886 46.716 1.00 -0.25 \ ATOM 188 N THR V 27 0.757 6.918 52.083 1.00 -0.98 \ ATOM 189 CA THR V 27 1.506 7.896 52.861 1.00 -0.98 \ ATOM 190 C THR V 27 2.922 8.035 52.317 1.00 -0.98 \ ATOM 191 O THR V 27 3.661 7.055 52.225 1.00 -0.98 \ ATOM 192 CB THR V 27 1.567 7.510 54.351 1.00 -0.98 \ """, "e5uu3V1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5uu3V1_csv", state=0, origin=1) cmd.zoom("e5uu3V1_csv", animate=-1)