cmd.read_pdbstr("""\ ATOM 1 N ASN X 3 -20.686 5.645 37.386 1.00 -0.47 \ ATOM 2 CA ASN X 3 -20.330 7.053 37.533 1.00 -0.47 \ ATOM 3 C ASN X 3 -19.667 7.338 38.875 1.00 -0.47 \ ATOM 4 O ASN X 3 -18.790 8.193 38.974 1.00 -0.47 \ ATOM 5 CB ASN X 3 -21.569 7.936 37.368 1.00 -0.47 \ ATOM 6 N GLN X 4 -20.088 6.617 39.907 1.00 0.23 \ ATOM 7 CA GLN X 4 -19.492 6.775 41.225 1.00 0.23 \ ATOM 8 C GLN X 4 -18.051 6.278 41.205 1.00 0.23 \ ATOM 9 O GLN X 4 -17.170 6.867 41.832 1.00 0.23 \ ATOM 10 CB GLN X 4 -20.304 6.024 42.283 1.00 0.23 \ ATOM 11 N HIS X 5 -17.819 5.192 40.475 1.00 -0.04 \ ATOM 12 CA HIS X 5 -16.485 4.616 40.361 1.00 -0.04 \ ATOM 13 C HIS X 5 -15.516 5.561 39.655 1.00 -0.04 \ ATOM 14 O HIS X 5 -14.356 5.677 40.044 1.00 -0.04 \ ATOM 15 CB HIS X 5 -16.537 3.282 39.623 1.00 -0.04 \ ATOM 16 CG HIS X 5 -15.212 2.596 39.538 1.00 -0.04 \ ATOM 17 ND1 HIS X 5 -14.560 2.378 38.343 1.00 -0.04 \ ATOM 18 CD2 HIS X 5 -14.408 2.089 40.502 1.00 -0.04 \ ATOM 19 CE1 HIS X 5 -13.416 1.762 38.574 1.00 -0.04 \ ATOM 20 NE2 HIS X 5 -13.298 1.575 39.877 1.00 -0.04 \ ATOM 21 N LEU X 6 -15.998 6.228 38.612 1.00 1.14 \ ATOM 22 CA LEU X 6 -15.179 7.184 37.880 1.00 1.14 \ ATOM 23 C LEU X 6 -14.854 8.392 38.749 1.00 1.14 \ ATOM 24 O LEU X 6 -13.708 8.832 38.801 1.00 1.14 \ ATOM 25 CB LEU X 6 -15.880 7.622 36.593 1.00 1.14 \ ATOM 26 CG LEU X 6 -16.140 6.502 35.581 1.00 1.14 \ ATOM 27 CD1 LEU X 6 -16.779 7.040 34.307 1.00 1.14 \ ATOM 28 CD2 LEU X 6 -14.845 5.793 35.254 1.00 1.14 \ ATOM 29 N CYS X 7 -15.865 8.916 39.435 1.00 1.71 \ ATOM 30 CA CYS X 7 -15.677 10.031 40.357 1.00 1.71 \ ATOM 31 C CYS X 7 -14.635 9.686 41.420 1.00 1.71 \ ATOM 32 O CYS X 7 -13.817 10.524 41.797 1.00 1.71 \ ATOM 33 CB CYS X 7 -17.006 10.411 41.016 1.00 1.71 \ ATOM 34 SG CYS X 7 -16.880 11.686 42.295 1.00 1.71 \ ATOM 35 N GLY X 8 -14.681 8.450 41.909 1.00 0.69 \ ATOM 36 CA GLY X 8 -13.723 7.983 42.894 1.00 0.69 \ ATOM 37 C GLY X 8 -12.291 8.074 42.398 1.00 0.69 \ ATOM 38 O GLY X 8 -11.379 8.415 43.152 1.00 0.69 \ ATOM 39 N SER X 9 -12.095 7.763 41.122 1.00 -0.48 \ ATOM 40 CA SER X 9 -10.776 7.839 40.506 1.00 -0.48 \ ATOM 41 C SER X 9 -10.202 9.256 40.570 1.00 -0.48 \ ATOM 42 O SER X 9 -9.016 9.440 40.829 1.00 -0.48 \ ATOM 43 CB SER X 9 -10.833 7.360 39.055 1.00 -0.48 \ ATOM 44 OG SER X 9 -9.595 7.586 38.408 1.00 -0.48 \ ATOM 45 N HIS X 10 -11.042 10.250 40.313 1.00 -0.23 \ ATOM 46 CA HIS X 10 -10.613 11.642 40.401 1.00 -0.23 \ ATOM 47 C HIS X 10 -10.397 12.073 41.847 1.00 -0.23 \ ATOM 48 O HIS X 10 -9.495 12.854 42.138 1.00 -0.23 \ ATOM 49 CB HIS X 10 -11.630 12.563 39.731 1.00 -0.23 \ ATOM 50 CG HIS X 10 -11.663 12.438 38.240 1.00 -0.23 \ ATOM 51 ND1 HIS X 10 -10.813 13.146 37.418 1.00 -0.23 \ ATOM 52 CD2 HIS X 10 -12.436 11.686 37.425 1.00 -0.23 \ ATOM 53 CE1 HIS X 10 -11.066 12.840 36.159 1.00 -0.23 \ ATOM 54 NE2 HIS X 10 -12.049 11.956 36.136 1.00 -0.23 \ ATOM 55 N LEU X 11 -11.222 11.550 42.749 1.00 1.71 \ ATOM 56 CA LEU X 11 -11.136 11.905 44.161 1.00 1.71 \ ATOM 57 C LEU X 11 -9.791 11.529 44.777 1.00 1.71 \ ATOM 58 O LEU X 11 -9.188 12.332 45.487 1.00 1.71 \ ATOM 59 CB LEU X 11 -12.273 11.247 44.943 1.00 1.71 \ ATOM 60 CG LEU X 11 -13.628 11.955 44.871 1.00 1.71 \ ATOM 61 CD1 LEU X 11 -14.672 11.214 45.692 1.00 1.71 \ ATOM 62 CD2 LEU X 11 -13.511 13.405 45.328 1.00 1.71 \ ATOM 63 N VAL X 12 -9.312 10.323 44.487 1.00 0.69 \ ATOM 64 CA VAL X 12 -8.053 9.849 45.060 1.00 0.69 \ ATOM 65 C VAL X 12 -6.876 10.646 44.507 1.00 0.69 \ ATOM 66 O VAL X 12 -5.890 10.882 45.207 1.00 0.69 \ ATOM 67 CB VAL X 12 -7.831 8.338 44.802 1.00 0.69 \ ATOM 68 CG1 VAL X 12 -8.827 7.505 45.610 1.00 0.69 \ ATOM 69 CG2 VAL X 12 -7.928 8.021 43.319 1.00 0.69 \ ATOM 70 N GLU X 13 -6.984 11.046 43.245 1.00 0.66 \ ATOM 71 CA GLU X 13 -5.990 11.917 42.631 1.00 0.66 \ ATOM 72 C GLU X 13 -5.956 13.273 43.339 1.00 0.66 \ ATOM 73 O GLU X 13 -4.887 13.825 43.598 1.00 0.66 \ ATOM 74 CB GLU X 13 -6.279 12.097 41.140 1.00 0.66 \ ATOM 75 N ALA X 14 -7.134 13.801 43.654 1.00 -0.03 \ ATOM 76 CA ALA X 14 -7.233 15.080 44.345 1.00 -0.03 \ ATOM 77 C ALA X 14 -6.659 14.982 45.760 1.00 -0.03 \ ATOM 78 O ALA X 14 -5.920 15.863 46.194 1.00 -0.03 \ ATOM 79 CB ALA X 14 -8.678 15.555 44.384 1.00 -0.03 \ ATOM 80 N LEU X 15 -6.998 13.910 46.474 1.00 1.71 \ ATOM 81 CA LEU X 15 -6.478 13.703 47.824 1.00 1.71 \ ATOM 82 C LEU X 15 -4.958 13.595 47.806 1.00 1.71 \ ATOM 83 O LEU X 15 -4.280 14.076 48.717 1.00 1.71 \ ATOM 84 CB LEU X 15 -7.084 12.449 48.467 1.00 1.71 \ ATOM 85 CG LEU X 15 -8.554 12.510 48.884 1.00 1.71 \ ATOM 86 CD1 LEU X 15 -9.049 11.133 49.305 1.00 1.71 \ ATOM 87 CD2 LEU X 15 -8.754 13.517 50.008 1.00 1.71 \ ATOM 88 N TYR X 16 -4.433 12.962 46.762 1.00 -0.22 \ ATOM 89 CA TYR X 16 -2.994 12.784 46.619 1.00 -0.22 \ ATOM 90 C TYR X 16 -2.274 14.131 46.561 1.00 -0.22 \ ATOM 91 O TYR X 16 -1.200 14.300 47.139 1.00 -0.22 \ ATOM 92 CB TYR X 16 -2.677 11.964 45.368 1.00 -0.22 \ ATOM 93 CG TYR X 16 -1.200 11.832 45.088 1.00 -0.22 \ ATOM 94 CD1 TYR X 16 -0.419 10.925 45.790 1.00 -0.22 \ ATOM 95 CD2 TYR X 16 -0.583 12.621 44.128 1.00 -0.22 \ ATOM 96 CE1 TYR X 16 0.933 10.804 45.541 1.00 -0.22 \ ATOM 97 CE2 TYR X 16 0.768 12.508 43.871 1.00 -0.22 \ ATOM 98 CZ TYR X 16 1.521 11.598 44.581 1.00 -0.22 \ ATOM 99 OH TYR X 16 2.868 11.481 44.330 1.00 -0.22 \ ATOM 100 N LEU X 17 -2.877 15.086 45.864 1.00 -0.23 \ ATOM 101 CA LEU X 17 -2.293 16.415 45.726 1.00 -0.23 \ ATOM 102 C LEU X 17 -2.483 17.253 46.992 1.00 -0.23 \ ATOM 103 O LEU X 17 -1.540 17.867 47.489 1.00 -0.23 \ ATOM 104 CB LEU X 17 -2.906 17.134 44.521 1.00 -0.23 \ ATOM 105 CG LEU X 17 -2.472 18.583 44.299 1.00 -0.23 \ ATOM 106 CD1 LEU X 17 -1.053 18.640 43.754 1.00 -0.23 \ ATOM 107 CD2 LEU X 17 -3.444 19.299 43.373 1.00 -0.23 \ ATOM 108 N VAL X 18 -3.708 17.263 47.506 1.00 0.24 \ ATOM 109 CA VAL X 18 -4.072 18.105 48.640 1.00 0.24 \ ATOM 110 C VAL X 18 -3.475 17.641 49.969 1.00 0.24 \ ATOM 111 O VAL X 18 -2.998 18.454 50.754 1.00 0.24 \ ATOM 112 CB VAL X 18 -5.604 18.192 48.782 1.00 0.24 \ ATOM 113 CG1 VAL X 18 -5.976 18.937 50.050 1.00 0.24 \ ATOM 114 CG2 VAL X 18 -6.207 18.879 47.562 1.00 0.24 \ ATOM 115 N CYS X 19 -3.488 16.335 50.211 1.00 1.71 \ ATOM 116 CA CYS X 19 -3.077 15.796 51.508 1.00 1.71 \ ATOM 117 C CYS X 19 -1.563 15.828 51.691 1.00 1.71 \ ATOM 118 O CYS X 19 -1.068 15.849 52.820 1.00 1.71 \ ATOM 119 CB CYS X 19 -3.592 14.367 51.684 1.00 1.71 \ ATOM 120 SG CYS X 19 -5.390 14.234 51.734 1.00 1.71 \ ATOM 121 N GLY X 20 -0.840 15.813 50.576 1.00 -0.18 \ ATOM 122 CA GLY X 20 0.609 15.906 50.584 1.00 -0.18 \ ATOM 123 C GLY X 20 1.311 14.888 51.461 1.00 -0.18 \ ATOM 124 O GLY X 20 1.130 13.680 51.299 1.00 -0.18 \ ATOM 125 N GLU X 21 2.114 15.384 52.397 1.00 0.19 \ ATOM 126 CA GLU X 21 2.933 14.534 53.255 1.00 0.19 \ ATOM 127 C GLU X 21 2.111 13.734 54.263 1.00 0.19 \ ATOM 128 O GLU X 21 2.523 12.656 54.693 1.00 0.19 \ ATOM 129 CB GLU X 21 3.974 15.380 53.993 1.00 0.19 \ ATOM 130 N ARG X 22 0.952 14.265 54.639 1.00 -0.63 \ ATOM 131 CA ARG X 22 0.092 13.612 55.623 1.00 -0.63 \ ATOM 132 C ARG X 22 -0.416 12.252 55.147 1.00 -0.63 \ ATOM 133 O ARG X 22 -0.676 11.363 55.957 1.00 -0.63 \ ATOM 134 CB ARG X 22 -1.095 14.514 55.969 1.00 -0.63 \ ATOM 135 N GLY X 23 -0.553 12.096 53.834 1.00 1.71 \ ATOM 136 CA GLY X 23 -1.100 10.878 53.264 1.00 1.71 \ ATOM 137 C GLY X 23 -2.597 10.780 53.492 1.00 1.71 \ ATOM 138 O GLY X 23 -3.215 11.725 53.982 1.00 1.71 \ ATOM 139 N PHE X 24 -3.187 9.641 53.140 1.00 1.12 \ ATOM 140 CA PHE X 24 -4.628 9.473 53.298 1.00 1.12 \ ATOM 141 C PHE X 24 -5.110 8.023 53.253 1.00 1.12 \ ATOM 142 O PHE X 24 -4.350 7.106 52.948 1.00 1.12 \ ATOM 143 CB PHE X 24 -5.362 10.291 52.230 1.00 1.12 \ ATOM 144 CG PHE X 24 -5.139 9.805 50.823 1.00 1.12 \ ATOM 145 CD1 PHE X 24 -4.015 10.192 50.113 1.00 1.12 \ ATOM 146 CD2 PHE X 24 -6.058 8.971 50.207 1.00 1.12 \ ATOM 147 CE1 PHE X 24 -3.809 9.754 48.810 1.00 1.12 \ ATOM 148 CE2 PHE X 24 -5.856 8.527 48.907 1.00 1.12 \ ATOM 149 CZ PHE X 24 -4.731 8.920 48.210 1.00 1.12 \ ATOM 150 N PHE X 25 -6.395 7.849 53.552 1.00 0.52 \ ATOM 151 CA PHE X 25 -7.076 6.562 53.492 1.00 0.52 \ ATOM 152 C PHE X 25 -8.234 6.667 52.513 1.00 0.52 \ ATOM 153 O PHE X 25 -8.914 7.690 52.458 1.00 0.52 \ ATOM 154 CB PHE X 25 -7.625 6.146 54.864 1.00 0.52 \ ATOM 155 CG PHE X 25 -6.692 5.296 55.685 1.00 0.52 \ ATOM 156 CD1 PHE X 25 -5.682 5.869 56.440 1.00 0.52 \ ATOM 157 CD2 PHE X 25 -6.856 3.919 55.732 1.00 0.52 \ ATOM 158 CE1 PHE X 25 -4.839 5.082 57.209 1.00 0.52 \ ATOM 159 CE2 PHE X 25 -6.018 3.127 56.499 1.00 0.52 \ ATOM 160 CZ PHE X 25 -5.007 3.710 57.236 1.00 0.52 \ ATOM 161 N TYR X 26 -8.469 5.607 51.750 1.00 -0.25 \ ATOM 162 CA TYR X 26 -9.632 5.560 50.875 1.00 -0.25 \ ATOM 163 C TYR X 26 -10.285 4.186 50.913 1.00 -0.25 \ ATOM 164 O TYR X 26 -9.613 3.165 50.775 1.00 -0.25 \ ATOM 165 CB TYR X 26 -9.263 5.916 49.433 1.00 -0.25 \ ATOM 166 CG TYR X 26 -10.481 6.070 48.553 1.00 -0.25 \ ATOM 167 CD1 TYR X 26 -11.060 4.966 47.939 1.00 -0.25 \ ATOM 168 CD2 TYR X 26 -11.070 7.312 48.357 1.00 -0.25 \ ATOM 169 CE1 TYR X 26 -12.183 5.094 47.148 1.00 -0.25 \ ATOM 170 CE2 TYR X 26 -12.193 7.452 47.563 1.00 -0.25 \ ATOM 171 CZ TYR X 26 -12.745 6.339 46.961 1.00 -0.25 \ ATOM 172 OH TYR X 26 -13.864 6.473 46.170 1.00 -0.25 \ ATOM 173 N THR X 27 -11.601 4.174 51.103 1.00 -0.98 \ ATOM 174 CA THR X 27 -12.374 2.939 51.104 1.00 -0.98 \ ATOM 175 C THR X 27 -13.783 3.182 50.574 1.00 -0.98 \ ATOM 176 O THR X 27 -14.531 3.990 51.125 1.00 -0.98 \ ATOM 177 CB THR X 27 -12.462 2.327 52.511 1.00 -0.98 \ ATOM 178 OG1 THR X 27 -12.707 3.364 53.469 1.00 -0.98 \ ATOM 179 CG2 THR X 27 -11.165 1.615 52.863 1.00 -0.98 \ """, "e5uu3X1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5uu3X1_csv", state=0, origin=1) cmd.zoom("e5uu3X1_csv", animate=-1)