cmd.read_pdbstr("""\ ATOM 1 N VAL y 18 -4.450 52.562 124.112 1.00 -1.50 \ ATOM 2 CA VAL y 18 -5.446 51.428 124.207 1.00 -1.50 \ ATOM 3 C VAL y 18 -6.271 51.311 122.931 1.00 -1.50 \ ATOM 4 O VAL y 18 -6.497 50.184 122.480 1.00 -1.50 \ ATOM 5 CB VAL y 18 -6.363 51.496 125.464 1.00 -1.50 \ ATOM 6 CG1 VAL y 18 -7.600 50.613 125.308 1.00 -1.50 \ ATOM 7 CG2 VAL y 18 -5.583 51.081 126.719 1.00 -1.50 \ ATOM 8 N ILE y 19 -6.715 52.451 122.374 1.00 0.64 \ ATOM 9 CA ILE y 19 -7.338 52.522 121.014 1.00 0.64 \ ATOM 10 C ILE y 19 -6.331 52.126 119.907 1.00 0.64 \ ATOM 11 O ILE y 19 -6.686 51.385 118.953 1.00 0.64 \ ATOM 12 CB ILE y 19 -7.892 53.949 120.663 1.00 0.64 \ ATOM 13 CG1 ILE y 19 -9.005 54.373 121.626 1.00 0.64 \ ATOM 14 CG2 ILE y 19 -8.438 53.997 119.224 1.00 0.64 \ ATOM 15 CD1 ILE y 19 -9.239 55.870 121.673 1.00 0.64 \ ATOM 16 N ALA y 20 -5.099 52.648 120.036 1.00 0.64 \ ATOM 17 CA ALA y 20 -4.009 52.362 119.108 1.00 0.64 \ ATOM 18 C ALA y 20 -3.721 50.893 119.176 1.00 0.64 \ ATOM 19 O ALA y 20 -3.675 50.232 118.142 1.00 0.64 \ ATOM 20 CB ALA y 20 -2.758 53.151 119.466 1.00 0.64 \ ATOM 21 N GLN y 21 -3.538 50.408 120.411 1.00 0.64 \ ATOM 22 CA GLN y 21 -3.358 48.969 120.725 1.00 0.64 \ ATOM 23 C GLN y 21 -4.454 48.062 120.103 1.00 0.64 \ ATOM 24 O GLN y 21 -4.140 47.068 119.391 1.00 0.64 \ ATOM 25 CB GLN y 21 -3.308 48.747 122.260 1.00 0.64 \ ATOM 26 CG GLN y 21 -1.925 48.800 122.882 1.00 0.64 \ ATOM 27 CD GLN y 21 -1.950 49.071 124.370 1.00 0.64 \ ATOM 28 OE1 GLN y 21 -3.011 49.129 125.005 1.00 0.64 \ ATOM 29 NE2 GLN y 21 -0.770 49.239 124.943 1.00 0.64 \ ATOM 30 N LEU y 22 -5.721 48.423 120.369 1.00 0.64 \ ATOM 31 CA LEU y 22 -6.878 47.700 119.834 1.00 0.64 \ ATOM 32 C LEU y 22 -6.912 47.826 118.309 1.00 0.64 \ ATOM 33 O LEU y 22 -7.201 46.842 117.634 1.00 0.64 \ ATOM 34 CB LEU y 22 -8.205 48.120 120.512 1.00 0.64 \ ATOM 35 CG LEU y 22 -8.296 47.634 121.980 1.00 0.64 \ ATOM 36 CD1 LEU y 22 -9.322 48.421 122.773 1.00 0.64 \ ATOM 37 CD2 LEU y 22 -8.573 46.138 122.118 1.00 0.64 \ ATOM 38 N THR y 23 -6.557 48.998 117.757 1.00 0.64 \ ATOM 39 CA THR y 23 -6.469 49.132 116.301 1.00 0.64 \ ATOM 40 C THR y 23 -5.273 48.389 115.658 1.00 0.64 \ ATOM 41 O THR y 23 -5.380 47.899 114.545 1.00 0.64 \ ATOM 42 CB THR y 23 -6.363 50.604 115.852 1.00 0.64 \ ATOM 43 OG1 THR y 23 -7.440 51.339 116.420 1.00 0.64 \ ATOM 44 CG2 THR y 23 -6.443 50.716 114.335 1.00 0.64 \ ATOM 45 N MET y 24 -4.122 48.362 116.324 1.00 0.64 \ ATOM 46 CA MET y 24 -2.976 47.638 115.788 1.00 0.64 \ ATOM 47 C MET y 24 -3.405 46.203 115.714 1.00 0.64 \ ATOM 48 O MET y 24 -3.370 45.599 114.623 1.00 0.64 \ ATOM 49 CB MET y 24 -1.726 47.729 116.676 1.00 0.64 \ ATOM 50 CG MET y 24 -1.100 49.087 116.751 1.00 0.64 \ ATOM 51 SD MET y 24 -0.951 49.808 115.095 1.00 0.64 \ ATOM 52 CE MET y 24 -2.466 50.792 114.900 1.00 0.64 \ ATOM 53 N ILE y 25 -3.861 45.688 116.861 1.00 -1.50 \ ATOM 54 CA ILE y 25 -4.186 44.247 116.954 1.00 -1.50 \ ATOM 55 C ILE y 25 -5.357 43.861 116.033 1.00 -1.50 \ ATOM 56 O ILE y 25 -5.362 42.733 115.561 1.00 -1.50 \ ATOM 57 CB ILE y 25 -4.327 43.699 118.423 1.00 -1.50 \ ATOM 58 CG1 ILE y 25 -4.420 42.140 118.489 1.00 -1.50 \ ATOM 59 CG2 ILE y 25 -5.541 44.282 119.111 1.00 -1.50 \ ATOM 60 CD1 ILE y 25 -3.207 41.320 118.023 1.00 -1.50 \ ATOM 61 N ALA y 26 -6.299 44.763 115.718 1.00 0.64 \ ATOM 62 CA ALA y 26 -7.354 44.436 114.719 1.00 0.64 \ ATOM 63 C ALA y 26 -6.799 44.329 113.272 1.00 0.64 \ ATOM 64 O ALA y 26 -7.251 43.462 112.513 1.00 0.64 \ ATOM 65 CB ALA y 26 -8.536 45.403 114.792 1.00 0.64 \ ATOM 66 N MET y 27 -5.813 45.171 112.926 1.00 -1.50 \ ATOM 67 CA MET y 27 -5.161 45.135 111.623 0.50 -1.50 \ ATOM 68 C MET y 27 -4.284 43.889 111.490 1.00 -1.50 \ ATOM 69 O MET y 27 -4.370 43.148 110.524 1.00 -1.50 \ ATOM 70 CB MET y 27 -4.314 46.403 111.439 0.50 -1.50 \ ATOM 71 CG MET y 27 -5.142 47.694 111.387 0.50 -1.50 \ ATOM 72 SD MET y 27 -4.217 49.228 111.649 0.50 -1.50 \ ATOM 73 CE MET y 27 -3.389 49.409 110.067 0.50 -1.50 \ ATOM 74 N ILE y 28 -3.411 43.680 112.452 1.00 0.64 \ ATOM 75 CA ILE y 28 -2.508 42.530 112.463 1.00 0.64 \ ATOM 76 C ILE y 28 -3.356 41.262 112.472 1.00 0.64 \ ATOM 77 O ILE y 28 -3.085 40.343 111.739 1.00 0.64 \ ATOM 78 CB ILE y 28 -1.601 42.569 113.710 1.00 0.64 \ ATOM 79 CG1 ILE y 28 -0.516 43.614 113.514 1.00 0.64 \ ATOM 80 CG2 ILE y 28 -0.956 41.210 113.992 1.00 0.64 \ ATOM 81 CD1 ILE y 28 0.150 44.062 114.805 1.00 0.64 \ ATOM 82 N GLY y 29 -4.407 41.260 113.288 1.00 -1.50 \ ATOM 83 CA GLY y 29 -5.351 40.151 113.405 1.00 -1.50 \ ATOM 84 C GLY y 29 -6.071 39.784 112.126 1.00 -1.50 \ ATOM 85 O GLY y 29 -6.251 38.610 111.821 1.00 -1.50 \ ATOM 86 N ILE y 30 -6.474 40.794 111.373 1.00 0.64 \ ATOM 87 CA ILE y 30 -7.176 40.580 110.137 1.00 0.64 \ ATOM 88 C ILE y 30 -6.205 40.122 109.040 1.00 0.64 \ ATOM 89 O ILE y 30 -6.653 39.459 108.123 1.00 0.64 \ ATOM 90 CB ILE y 30 -8.001 41.846 109.731 1.00 0.64 \ ATOM 91 CG1 ILE y 30 -9.231 41.461 108.912 1.00 0.64 \ ATOM 92 CG2 ILE y 30 -7.140 42.821 108.976 1.00 0.64 \ ATOM 93 CD1 ILE y 30 -10.370 40.907 109.766 1.00 0.64 \ ATOM 94 N ALA y 31 -4.902 40.458 109.116 1.00 0.64 \ ATOM 95 CA ALA y 31 -3.944 40.094 108.036 1.00 0.64 \ ATOM 96 C ALA y 31 -3.943 38.611 107.598 1.00 0.64 \ ATOM 97 O ALA y 31 -3.954 38.292 106.419 1.00 0.64 \ ATOM 98 CB ALA y 31 -2.531 40.491 108.420 1.00 0.64 \ ATOM 99 N GLY y 32 -3.906 37.699 108.560 1.00 0.64 \ ATOM 100 CA GLY y 32 -3.881 36.272 108.296 1.00 0.64 \ ATOM 101 C GLY y 32 -5.116 35.796 107.528 1.00 0.64 \ ATOM 102 O GLY y 32 -4.971 35.246 106.432 1.00 0.64 \ ATOM 103 N PRO y 33 -6.333 35.995 108.110 1.00 0.64 \ ATOM 104 CA PRO y 33 -7.585 35.662 107.408 1.00 0.64 \ ATOM 105 C PRO y 33 -7.789 36.366 106.074 1.00 0.64 \ ATOM 106 O PRO y 33 -8.463 35.800 105.205 1.00 0.64 \ ATOM 107 CB PRO y 33 -8.692 36.031 108.421 1.00 0.64 \ ATOM 108 CG PRO y 33 -8.034 35.861 109.746 1.00 0.64 \ ATOM 109 CD PRO y 33 -6.593 36.292 109.534 1.00 0.64 \ ATOM 110 N MET y 34 -7.218 37.571 105.918 1.00 -1.50 \ ATOM 111 CA MET y 34 -7.246 38.317 104.644 1.00 -1.50 \ ATOM 112 C MET y 34 -6.412 37.594 103.577 1.00 -1.50 \ ATOM 113 O MET y 34 -6.833 37.563 102.413 1.00 -1.50 \ ATOM 114 CB MET y 34 -6.767 39.791 104.825 1.00 -1.50 \ ATOM 115 CG MET y 34 -6.954 40.757 103.647 1.00 -1.50 \ ATOM 116 SD MET y 34 -8.611 40.670 102.911 1.00 -1.50 \ ATOM 117 CE MET y 34 -9.690 40.907 104.366 1.00 -1.50 \ ATOM 118 N ILE y 35 -5.253 37.014 103.946 1.00 -1.50 \ ATOM 119 CA ILE y 35 -4.452 36.285 102.979 1.00 -1.50 \ ATOM 120 C ILE y 35 -5.275 35.069 102.496 1.00 -1.50 \ ATOM 121 O ILE y 35 -5.394 34.814 101.294 1.00 -1.50 \ ATOM 122 CB ILE y 35 -3.093 35.838 103.578 1.00 -1.50 \ ATOM 123 CG1 ILE y 35 -2.166 37.033 103.857 1.00 -1.50 \ ATOM 124 CG2 ILE y 35 -2.356 34.838 102.680 1.00 -1.50 \ ATOM 125 CD1 ILE y 35 -1.022 36.692 104.824 1.00 -1.50 \ ATOM 126 N ILE y 36 -5.892 34.339 103.429 1.00 0.64 \ ATOM 127 CA ILE y 36 -6.675 33.149 103.065 1.00 0.64 \ ATOM 128 C ILE y 36 -7.872 33.555 102.167 1.00 0.64 \ ATOM 129 O ILE y 36 -8.156 32.926 101.132 1.00 0.64 \ ATOM 130 CB ILE y 36 -7.164 32.410 104.308 1.00 0.64 \ ATOM 131 CG1 ILE y 36 -5.988 31.969 105.196 1.00 0.64 \ ATOM 132 CG2 ILE y 36 -7.969 31.187 103.914 1.00 0.64 \ ATOM 133 CD1 ILE y 36 -4.831 31.316 104.500 1.00 0.64 \ ATOM 134 N PHE y 37 -8.548 34.617 102.545 1.00 0.64 \ ATOM 135 CA PHE y 37 -9.684 35.091 101.804 1.00 0.64 \ ATOM 136 C PHE y 37 -9.326 35.562 100.398 1.00 0.64 \ ATOM 137 O PHE y 37 -10.094 35.303 99.447 1.00 0.64 \ ATOM 138 CB PHE y 37 -10.327 36.251 102.537 1.00 0.64 \ ATOM 139 CG PHE y 37 -11.527 36.792 101.828 1.00 0.64 \ ATOM 140 CD1 PHE y 37 -12.739 36.095 101.871 1.00 0.64 \ ATOM 141 CD2 PHE y 37 -11.449 37.967 101.061 1.00 0.64 \ ATOM 142 CE1 PHE y 37 -13.837 36.575 101.181 1.00 0.64 \ ATOM 143 CE2 PHE y 37 -12.555 38.433 100.399 1.00 0.64 \ ATOM 144 CZ PHE y 37 -13.741 37.750 100.468 1.00 0.64 \ ATOM 145 N LEU y 38 -8.206 36.280 100.271 1.00 0.64 \ ATOM 146 CA LEU y 38 -7.728 36.743 98.964 1.00 0.64 \ ATOM 147 C LEU y 38 -7.392 35.560 98.055 1.00 0.64 \ ATOM 148 O LEU y 38 -7.797 35.524 96.899 1.00 0.64 \ ATOM 149 CB LEU y 38 -6.497 37.665 99.091 1.00 0.64 \ ATOM 150 CG LEU y 38 -6.710 39.109 99.647 1.00 0.64 \ ATOM 151 CD1 LEU y 38 -5.401 39.851 99.672 1.00 0.64 \ ATOM 152 CD2 LEU y 38 -7.682 39.911 98.828 1.00 0.64 \ ATOM 153 N LEU y 39 -6.649 34.595 98.567 1.00 0.64 \ ATOM 154 CA LEU y 39 -6.354 33.416 97.780 1.00 0.64 \ ATOM 155 C LEU y 39 -7.580 32.599 97.414 1.00 0.64 \ ATOM 156 O LEU y 39 -7.637 32.054 96.313 1.00 0.64 \ ATOM 157 CB LEU y 39 -5.338 32.551 98.494 1.00 0.64 \ ATOM 158 CG LEU y 39 -3.999 33.216 98.425 1.00 0.64 \ ATOM 159 CD1 LEU y 39 -3.111 32.612 99.499 1.00 0.64 \ ATOM 160 CD2 LEU y 39 -3.365 33.019 97.064 1.00 0.64 \ ATOM 161 N ALA y 40 -8.555 32.517 98.321 1.00 0.64 \ ATOM 162 CA ALA y 40 -9.793 31.738 98.062 1.00 0.64 \ ATOM 163 C ALA y 40 -10.538 32.349 96.893 1.00 0.64 \ ATOM 164 O ALA y 40 -11.024 31.650 95.990 1.00 0.64 \ ATOM 165 CB ALA y 40 -10.709 31.695 99.287 1.00 0.64 \ ATOM 166 N VAL y 41 -10.621 33.675 96.924 1.00 -1.50 \ ATOM 167 CA VAL y 41 -11.309 34.401 95.882 1.00 -1.50 \ ATOM 168 C VAL y 41 -10.591 34.207 94.549 1.00 -1.50 \ ATOM 169 O VAL y 41 -11.235 34.075 93.536 1.00 -1.50 \ ATOM 170 CB VAL y 41 -11.457 35.886 96.255 1.00 -1.50 \ ATOM 171 CG1 VAL y 41 -11.965 36.680 95.073 1.00 -1.50 \ ATOM 172 CG2 VAL y 41 -12.437 36.020 97.416 1.00 -1.50 \ ATOM 173 N ARG y 42 -9.262 34.193 94.572 1.00 0.64 \ ATOM 174 CA ARG y 42 -8.416 34.110 93.367 1.00 0.64 \ ATOM 175 C ARG y 42 -8.090 32.670 92.939 1.00 0.64 \ ATOM 176 O ARG y 42 -7.263 32.472 92.030 1.00 0.64 \ ATOM 177 CB ARG y 42 -7.119 34.895 93.602 1.00 0.64 \ ATOM 178 CG ARG y 42 -7.402 36.386 93.827 1.00 0.64 \ ATOM 179 CD ARG y 42 -6.288 37.177 94.495 1.00 0.64 \ ATOM 180 NE ARG y 42 -5.037 37.052 93.750 1.00 0.64 \ ATOM 181 CZ ARG y 42 -4.077 37.979 93.709 1.00 0.64 \ ATOM 182 NH1 ARG y 42 -4.203 39.132 94.373 1.00 0.64 \ ATOM 183 NH2 ARG y 42 -2.966 37.759 92.997 1.00 0.64 \ ATOM 184 N ARG y 43 -8.754 31.677 93.558 1.00 -1.50 \ ATOM 185 CA ARG y 43 -8.458 30.239 93.333 1.00 -1.50 \ ATOM 186 C ARG y 43 -6.945 29.951 93.361 1.00 -1.50 \ ATOM 187 O ARG y 43 -6.381 29.283 92.509 1.00 -1.50 \ ATOM 188 CB ARG y 43 -9.119 29.725 92.044 1.00 -1.50 \ ATOM 189 CG ARG y 43 -10.637 29.879 92.020 1.00 -1.50 \ ATOM 190 CD ARG y 43 -11.244 29.417 90.690 1.00 -1.50 \ ATOM 191 NE ARG y 43 -12.729 29.295 90.708 1.00 -1.50 \ ATOM 192 CZ ARG y 43 -13.516 29.125 89.626 1.00 -1.50 \ ATOM 193 NH1 ARG y 43 -13.014 29.030 88.394 1.00 -1.50 \ ATOM 194 NH2 ARG y 43 -14.845 29.023 89.769 1.00 -1.50 \ ATOM 195 N GLY y 44 -6.289 30.504 94.345 1.00 0.64 \ ATOM 196 CA GLY y 44 -4.850 30.307 94.519 1.00 0.64 \ ATOM 197 C GLY y 44 -4.579 28.955 95.153 1.00 0.64 \ ATOM 198 O GLY y 44 -5.510 28.176 95.539 1.00 0.64 \ ATOM 199 N ASN y 45 -3.285 28.692 95.298 1.00 -1.50 \ ATOM 200 CA ASN y 45 -2.794 27.393 95.668 1.00 -1.50 \ ATOM 201 C ASN y 45 -2.890 27.176 97.194 1.00 -1.50 \ ATOM 202 O ASN y 45 -1.869 26.960 97.848 1.00 -1.50 \ ATOM 203 CB ASN y 45 -1.356 27.203 95.099 1.00 -1.50 \ ATOM 204 CG ASN y 45 -0.986 25.734 94.886 1.00 -1.50 \ ATOM 205 OD1 ASN y 45 -1.857 24.854 94.776 1.00 -1.50 \ ATOM 206 ND2 ASN y 45 0.322 25.452 94.826 1.00 -1.50 \ ATOM 207 N LEU y 46 -4.118 27.218 97.741 1.00 0.64 \ ATOM 208 CA LEU y 46 -4.365 26.907 99.177 1.00 0.64 \ ATOM 209 C LEU y 46 -4.203 25.428 99.462 1.00 0.64 \ ATOM 210 O LEU y 46 -4.122 25.065 100.638 1.00 0.64 \ ATOM 211 CB LEU y 46 -5.764 27.302 99.657 1.00 0.64 \ ATOM 212 CG LEU y 46 -6.136 28.789 99.706 1.00 0.64 \ ATOM 213 CD1 LEU y 46 -7.604 28.920 100.063 1.00 0.64 \ ATOM 214 CD2 LEU y 46 -5.249 29.533 100.698 1.00 0.64 \ ATOM 215 OXT LEU y 46 -4.187 24.597 98.559 1.00 0.64 \ """, "e5v2cy1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5v2cy1_csv", state=0, origin=1) cmd.zoom("e5v2cy1_csv", animate=-1)