cmd.read_pdbstr("""\ ATOM 1 N PRO D 549 -8.342 8.605 -39.330 1.00 -0.22 \ ATOM 2 CA PRO D 549 -7.957 8.734 -37.921 1.00 -0.22 \ ATOM 3 C PRO D 549 -6.537 9.270 -37.749 1.00 -0.22 \ ATOM 4 O PRO D 549 -5.656 8.936 -38.543 1.00 -0.22 \ ATOM 5 CB PRO D 549 -8.068 7.294 -37.389 1.00 -0.22 \ ATOM 6 CG PRO D 549 -8.636 6.458 -38.536 1.00 -0.22 \ ATOM 7 CD PRO D 549 -9.169 7.410 -39.555 1.00 -0.22 \ ATOM 8 N HIS D 550 -6.324 10.094 -36.723 1.00 0.56 \ ATOM 9 CA HIS D 550 -5.012 10.674 -36.461 1.00 0.56 \ ATOM 10 C HIS D 550 -4.964 11.150 -35.016 1.00 0.56 \ ATOM 11 O HIS D 550 -5.841 11.903 -34.582 1.00 0.56 \ ATOM 12 CB HIS D 550 -4.718 11.834 -37.419 1.00 0.56 \ ATOM 13 N PHE D 551 -3.940 10.720 -34.284 1.00 -0.93 \ ATOM 14 CA PHE D 551 -3.801 11.058 -32.876 1.00 -0.93 \ ATOM 15 C PHE D 551 -3.149 12.431 -32.708 1.00 -0.93 \ ATOM 16 O PHE D 551 -2.697 13.060 -33.668 1.00 -0.93 \ ATOM 17 CB PHE D 551 -2.990 9.987 -32.149 1.00 -0.93 \ ATOM 18 N CYS D 552 -3.091 12.887 -31.457 1.00 1.92 \ ATOM 19 CA CYS D 552 -2.600 14.218 -31.122 1.00 1.92 \ ATOM 20 C CYS D 552 -1.078 14.184 -30.957 1.00 1.92 \ ATOM 21 O CYS D 552 -0.408 13.263 -31.432 1.00 1.92 \ ATOM 22 CB CYS D 552 -3.307 14.731 -29.863 1.00 1.92 \ ATOM 23 SG CYS D 552 -2.570 16.217 -29.128 1.00 1.92 \ ATOM 24 N GLN D 553 -0.519 15.191 -30.282 1.00 -0.86 \ ATOM 25 CA GLN D 553 0.916 15.262 -30.037 1.00 -0.86 \ ATOM 26 C GLN D 553 1.231 15.753 -28.629 1.00 -0.86 \ ATOM 27 O GLN D 553 1.812 15.015 -27.825 1.00 -0.86 \ ATOM 28 CB GLN D 553 1.594 16.177 -31.058 1.00 -0.86 \ ATOM 29 CG GLN D 553 2.210 15.450 -32.235 1.00 -0.86 \ ATOM 30 CD GLN D 553 3.422 16.174 -32.781 1.00 -0.86 \ ATOM 31 OE1 GLN D 553 4.112 16.887 -32.052 1.00 -0.86 \ ATOM 32 NE2 GLN D 553 3.687 15.999 -34.071 1.00 -0.86 \ ATOM 33 N ILE D 554 0.859 17.002 -28.331 1.00 -0.72 \ ATOM 34 CA ILE D 554 1.220 17.619 -27.053 1.00 -0.72 \ ATOM 35 C ILE D 554 0.653 16.809 -25.891 1.00 -0.72 \ ATOM 36 O ILE D 554 1.396 16.295 -25.047 1.00 -0.72 \ ATOM 37 CB ILE D 554 0.749 19.083 -27.007 1.00 -0.72 \ ATOM 38 N CYS D 555 -0.673 16.691 -25.827 1.00 1.92 \ ATOM 39 CA CYS D 555 -1.270 15.791 -24.848 1.00 1.92 \ ATOM 40 C CYS D 555 -1.264 14.355 -25.356 1.00 1.92 \ ATOM 41 O CYS D 555 -0.791 13.448 -24.661 1.00 1.92 \ ATOM 42 CB CYS D 555 -2.689 16.249 -24.497 1.00 1.92 \ ATOM 43 SG CYS D 555 -3.916 16.010 -25.801 1.00 1.92 \ ATOM 44 N GLY D 556 -1.766 14.139 -26.566 1.00 -0.81 \ ATOM 45 CA GLY D 556 -1.791 12.823 -27.158 1.00 -0.81 \ ATOM 46 C GLY D 556 -3.148 12.162 -27.207 1.00 -0.81 \ ATOM 47 O GLY D 556 -3.212 10.926 -27.277 1.00 -0.81 \ ATOM 48 N LYS D 557 -4.229 12.939 -27.174 1.00 0.02 \ ATOM 49 CA LYS D 557 -5.568 12.371 -27.171 1.00 0.02 \ ATOM 50 C LYS D 557 -5.928 11.827 -28.549 1.00 0.02 \ ATOM 51 O LYS D 557 -5.427 12.287 -29.578 1.00 0.02 \ ATOM 52 CB LYS D 557 -6.594 13.419 -26.741 1.00 0.02 \ ATOM 53 N THR D 558 -6.807 10.831 -28.559 1.00 -0.72 \ ATOM 54 CA THR D 558 -7.293 10.280 -29.816 1.00 -0.72 \ ATOM 55 C THR D 558 -8.280 11.246 -30.459 1.00 -0.72 \ ATOM 56 O THR D 558 -9.199 11.740 -29.798 1.00 -0.72 \ ATOM 57 CB THR D 558 -7.957 8.923 -29.584 1.00 -0.72 \ ATOM 58 OG1 THR D 558 -7.025 8.038 -28.952 1.00 -0.72 \ ATOM 59 N PHE D 559 -8.090 11.520 -31.749 1.00 1.25 \ ATOM 60 CA PHE D 559 -8.944 12.451 -32.471 1.00 1.25 \ ATOM 61 C PHE D 559 -9.341 11.870 -33.818 1.00 1.25 \ ATOM 62 O PHE D 559 -8.554 11.172 -34.463 1.00 1.25 \ ATOM 63 CB PHE D 559 -8.255 13.804 -32.670 1.00 1.25 \ ATOM 64 CG PHE D 559 -8.534 14.782 -31.572 1.00 1.25 \ ATOM 65 CD1 PHE D 559 -7.837 14.719 -30.377 1.00 1.25 \ ATOM 66 CD2 PHE D 559 -9.504 15.756 -31.728 1.00 1.25 \ ATOM 67 CE1 PHE D 559 -8.095 15.615 -29.359 1.00 1.25 \ ATOM 68 CE2 PHE D 559 -9.767 16.656 -30.714 1.00 1.25 \ ATOM 69 CZ PHE D 559 -9.062 16.585 -29.527 1.00 1.25 \ ATOM 70 N LYS D 560 -10.569 12.173 -34.234 1.00 -0.66 \ ATOM 71 CA LYS D 560 -11.104 11.686 -35.498 1.00 -0.66 \ ATOM 72 C LYS D 560 -10.751 12.630 -36.642 1.00 -0.66 \ ATOM 73 O LYS D 560 -9.767 12.406 -37.355 1.00 -0.66 \ ATOM 74 CB LYS D 560 -12.619 11.505 -35.391 1.00 -0.66 \ ATOM 75 CG LYS D 560 -13.286 12.434 -34.385 1.00 -0.66 \ ATOM 76 N ALA D 561 -11.545 13.682 -36.826 1.00 -0.79 \ ATOM 77 CA ALA D 561 -11.273 14.654 -37.874 1.00 -0.79 \ ATOM 78 C ALA D 561 -10.056 15.502 -37.519 1.00 -0.79 \ ATOM 79 O ALA D 561 -9.739 15.717 -36.346 1.00 -0.79 \ ATOM 80 CB ALA D 561 -12.488 15.552 -38.102 1.00 -0.79 \ ATOM 81 N VAL D 562 -9.373 15.990 -38.555 1.00 -0.72 \ ATOM 82 CA VAL D 562 -8.141 16.741 -38.337 1.00 -0.72 \ ATOM 83 C VAL D 562 -8.433 18.163 -37.868 1.00 -0.72 \ ATOM 84 O VAL D 562 -7.667 18.727 -37.076 1.00 -0.72 \ ATOM 85 CB VAL D 562 -7.287 16.735 -39.617 1.00 -0.72 \ ATOM 86 CG1 VAL D 562 -5.902 17.308 -39.341 1.00 -0.72 \ ATOM 87 N GLU D 563 -9.532 18.764 -38.334 1.00 -0.74 \ ATOM 88 CA GLU D 563 -9.855 20.129 -37.927 1.00 -0.74 \ ATOM 89 C GLU D 563 -10.110 20.212 -36.426 1.00 -0.74 \ ATOM 90 O GLU D 563 -9.704 21.182 -35.769 1.00 -0.74 \ ATOM 91 CB GLU D 563 -11.065 20.636 -38.713 1.00 -0.74 \ ATOM 92 CG GLU D 563 -11.288 22.139 -38.619 1.00 -0.74 \ ATOM 93 CD GLU D 563 -10.232 22.939 -39.363 1.00 -0.74 \ ATOM 94 OE1 GLU D 563 -9.522 22.354 -40.209 1.00 -0.74 \ ATOM 95 OE2 GLU D 563 -10.111 24.155 -39.102 1.00 -0.74 \ ATOM 96 N GLN D 564 -10.775 19.197 -35.864 1.00 -0.74 \ ATOM 97 CA GLN D 564 -10.964 19.139 -34.418 1.00 -0.74 \ ATOM 98 C GLN D 564 -9.628 19.124 -33.687 1.00 -0.74 \ ATOM 99 O GLN D 564 -9.453 19.818 -32.679 1.00 -0.74 \ ATOM 100 CB GLN D 564 -11.785 17.907 -34.044 1.00 -0.74 \ ATOM 101 CG GLN D 564 -13.268 18.040 -34.321 1.00 -0.74 \ ATOM 102 CD GLN D 564 -14.052 16.835 -33.846 1.00 -0.74 \ ATOM 103 OE1 GLN D 564 -13.523 15.725 -33.773 1.00 -0.74 \ ATOM 104 NE2 GLN D 564 -15.318 17.048 -33.511 1.00 -0.74 \ ATOM 105 N LEU D 565 -8.673 18.334 -34.179 1.00 0.60 \ ATOM 106 CA LEU D 565 -7.359 18.301 -33.550 1.00 0.60 \ ATOM 107 C LEU D 565 -6.643 19.640 -33.679 1.00 0.60 \ ATOM 108 O LEU D 565 -5.900 20.032 -32.772 1.00 0.60 \ ATOM 109 CB LEU D 565 -6.519 17.176 -34.155 1.00 0.60 \ ATOM 110 CG LEU D 565 -5.147 16.938 -33.523 1.00 0.60 \ ATOM 111 CD1 LEU D 565 -5.269 16.845 -32.013 1.00 0.60 \ ATOM 112 CD2 LEU D 565 -4.517 15.677 -34.086 1.00 0.60 \ ATOM 113 N ARG D 566 -6.861 20.359 -34.783 1.00 -0.65 \ ATOM 114 CA ARG D 566 -6.260 21.681 -34.942 1.00 -0.65 \ ATOM 115 C ARG D 566 -6.809 22.659 -33.909 1.00 -0.65 \ ATOM 116 O ARG D 566 -6.052 23.276 -33.146 1.00 -0.65 \ ATOM 117 CB ARG D 566 -6.503 22.199 -36.362 1.00 -0.65 \ ATOM 118 CG ARG D 566 -5.812 21.393 -37.452 1.00 -0.65 \ ATOM 119 N VAL D 567 -8.135 22.812 -33.867 1.00 -0.68 \ ATOM 120 CA VAL D 567 -8.729 23.742 -32.913 1.00 -0.68 \ ATOM 121 C VAL D 567 -8.498 23.297 -31.473 1.00 -0.68 \ ATOM 122 O VAL D 567 -8.581 24.120 -30.554 1.00 -0.68 \ ATOM 123 CB VAL D 567 -10.228 23.922 -33.212 1.00 -0.68 \ ATOM 124 CG1 VAL D 567 -10.416 24.436 -34.630 1.00 -0.68 \ ATOM 125 CG2 VAL D 567 -10.962 22.617 -33.032 1.00 -0.68 \ ATOM 126 N HIS D 568 -8.201 22.013 -31.251 1.00 1.92 \ ATOM 127 CA HIS D 568 -7.784 21.567 -29.923 1.00 1.92 \ ATOM 128 C HIS D 568 -6.352 21.992 -29.626 1.00 1.92 \ ATOM 129 O HIS D 568 -6.024 22.333 -28.483 1.00 1.92 \ ATOM 130 CB HIS D 568 -7.926 20.048 -29.805 1.00 1.92 \ ATOM 131 CG HIS D 568 -7.222 19.465 -28.617 1.00 1.92 \ ATOM 132 ND1 HIS D 568 -7.832 19.312 -27.391 1.00 1.92 \ ATOM 133 CD2 HIS D 568 -5.960 18.996 -28.471 1.00 1.92 \ ATOM 134 CE1 HIS D 568 -6.976 18.774 -26.540 1.00 1.92 \ ATOM 135 NE2 HIS D 568 -5.833 18.572 -27.171 1.00 1.92 \ ATOM 136 N VAL D 569 -5.481 21.964 -30.640 1.00 -0.83 \ ATOM 137 CA VAL D 569 -4.117 22.442 -30.448 1.00 -0.83 \ ATOM 138 C VAL D 569 -4.107 23.942 -30.190 1.00 -0.83 \ ATOM 139 O VAL D 569 -3.211 24.454 -29.509 1.00 -0.83 \ ATOM 140 CB VAL D 569 -3.239 22.077 -31.660 1.00 -0.83 \ ATOM 141 N ARG D 570 -5.099 24.667 -30.716 1.00 -0.32 \ ATOM 142 CA ARG D 570 -5.149 26.112 -30.502 1.00 -0.32 \ ATOM 143 C ARG D 570 -5.262 26.460 -29.020 1.00 -0.32 \ ATOM 144 O ARG D 570 -4.665 27.440 -28.560 1.00 -0.32 \ ATOM 145 CB ARG D 570 -6.312 26.718 -31.287 1.00 -0.32 \ ATOM 146 N ARG D 571 -6.013 25.668 -28.254 1.00 -0.43 \ ATOM 147 CA ARG D 571 -6.286 25.953 -26.844 1.00 -0.43 \ ATOM 148 C ARG D 571 -5.577 24.915 -25.976 1.00 -0.43 \ ATOM 149 O ARG D 571 -6.058 23.789 -25.822 1.00 -0.43 \ ATOM 150 CB ARG D 571 -7.789 25.960 -26.576 1.00 -0.43 \ ATOM 151 N HIS D 572 -4.439 25.304 -25.393 1.00 1.92 \ ATOM 152 CA HIS D 572 -3.703 24.377 -24.540 1.00 1.92 \ ATOM 153 C HIS D 572 -2.972 25.063 -23.389 1.00 1.92 \ ATOM 154 O HIS D 572 -2.108 24.426 -22.771 1.00 1.92 \ ATOM 155 CB HIS D 572 -2.701 23.567 -25.380 1.00 1.92 \ ATOM 156 CG HIS D 572 -2.840 22.083 -25.226 1.00 1.92 \ ATOM 157 ND1 HIS D 572 -2.707 21.444 -24.012 1.00 1.92 \ ATOM 158 CD2 HIS D 572 -3.088 21.112 -26.137 1.00 1.92 \ ATOM 159 CE1 HIS D 572 -2.874 20.145 -24.180 1.00 1.92 \ ATOM 160 NE2 HIS D 572 -3.106 19.916 -25.460 1.00 1.92 \ ATOM 161 N LYS D 573 -3.273 26.327 -23.086 1.00 0.37 \ ATOM 162 CA LYS D 573 -2.700 27.041 -21.947 1.00 0.37 \ ATOM 163 C LYS D 573 -1.181 27.152 -22.032 1.00 0.37 \ ATOM 164 O LYS D 573 -0.651 27.892 -22.868 1.00 0.37 \ ATOM 165 CB LYS D 573 -3.105 26.365 -20.633 1.00 0.37 \ """, "e5yj3D2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e5yj3D2_csv", state=0, origin=1) cmd.zoom("e5yj3D2_csv", animate=-1)