cmd.read_pdbstr("""\ ATOM 1 N PHE D 1 -7.075 -29.953 14.032 1.00 -1.00 \ ATOM 2 CA PHE D 1 -7.558 -28.954 15.000 1.00 -1.00 \ ATOM 3 C PHE D 1 -8.501 -29.597 16.018 1.00 -1.00 \ ATOM 4 O PHE D 1 -9.666 -29.844 15.698 1.00 -1.00 \ ATOM 5 CB PHE D 1 -8.271 -27.815 14.246 1.00 -1.00 \ ATOM 6 CG PHE D 1 -8.543 -26.583 15.079 1.00 -1.00 \ ATOM 7 CD1 PHE D 1 -9.745 -26.436 15.759 1.00 -1.00 \ ATOM 8 CD2 PHE D 1 -7.615 -25.553 15.147 1.00 -1.00 \ ATOM 9 CE1 PHE D 1 -10.000 -25.299 16.512 1.00 -1.00 \ ATOM 10 CE2 PHE D 1 -7.864 -24.411 15.906 1.00 -1.00 \ ATOM 11 CZ PHE D 1 -9.047 -24.276 16.574 1.00 -1.00 \ ATOM 12 N VAL D 2 -8.038 -29.864 17.225 1.00 -1.00 \ ATOM 13 CA VAL D 2 -8.856 -30.594 18.203 1.00 -1.00 \ ATOM 14 C VAL D 2 -9.306 -31.951 17.584 1.00 -1.00 \ ATOM 15 O VAL D 2 -10.405 -32.342 17.731 1.00 -1.00 \ ATOM 16 CB VAL D 2 -10.090 -29.818 18.706 1.00 -1.00 \ ATOM 17 CG1 VAL D 2 -10.713 -30.483 19.902 1.00 -1.00 \ ATOM 18 CG2 VAL D 2 -9.726 -28.419 19.114 1.00 -1.00 \ ATOM 19 N ASN D 3 -8.399 -32.560 16.829 1.00 -0.48 \ ATOM 20 CA ASN D 3 -8.531 -33.817 16.063 1.00 -0.48 \ ATOM 21 C ASN D 3 -9.520 -33.756 14.922 1.00 -0.48 \ ATOM 22 O ASN D 3 -9.901 -34.783 14.454 1.00 -0.48 \ ATOM 23 CB ASN D 3 -8.953 -35.057 16.896 1.00 -0.48 \ ATOM 24 CG ASN D 3 -8.305 -35.136 18.205 1.00 -0.48 \ ATOM 25 OD1 ASN D 3 -7.150 -35.404 18.261 1.00 -0.48 \ ATOM 26 ND2 ASN D 3 -9.041 -34.923 19.261 1.00 -0.48 \ ATOM 27 N GLN D 4 -9.956 -32.584 14.501 1.00 0.23 \ ATOM 28 CA GLN D 4 -10.923 -32.470 13.458 1.00 0.23 \ ATOM 29 C GLN D 4 -10.444 -31.575 12.379 1.00 0.23 \ ATOM 30 O GLN D 4 -9.460 -30.913 12.500 1.00 0.23 \ ATOM 31 CB GLN D 4 -12.233 -31.891 13.978 1.00 0.23 \ ATOM 32 CG GLN D 4 -12.970 -32.760 14.952 1.00 0.23 \ ATOM 33 CD GLN D 4 -14.243 -32.159 15.489 1.00 0.23 \ ATOM 34 OE1 GLN D 4 -14.525 -32.265 16.654 1.00 0.23 \ ATOM 35 NE2 GLN D 4 -15.005 -31.561 14.639 1.00 0.23 \ ATOM 36 N HIS D 5 -11.195 -31.587 11.314 1.00 -0.03 \ ATOM 37 CA HIS D 5 -10.921 -30.700 10.201 1.00 -0.03 \ ATOM 38 C HIS D 5 -11.494 -29.333 10.529 1.00 -0.03 \ ATOM 39 O HIS D 5 -12.542 -29.217 11.176 1.00 -0.03 \ ATOM 40 CB HIS D 5 -11.550 -31.252 8.926 1.00 -0.03 \ ATOM 41 CG HIS D 5 -11.009 -32.584 8.532 1.00 -0.03 \ ATOM 42 ND1 HIS D 5 -9.979 -32.727 7.629 1.00 -0.03 \ ATOM 43 CD2 HIS D 5 -11.305 -33.831 8.968 1.00 -0.03 \ ATOM 44 CE1 HIS D 5 -9.697 -34.008 7.489 1.00 -0.03 \ ATOM 45 NE2 HIS D 5 -10.489 -34.698 8.289 1.00 -0.03 \ ATOM 46 N LEU D 6 -10.782 -28.304 10.093 1.00 1.17 \ ATOM 47 CA LEU D 6 -11.131 -26.907 10.325 1.00 1.17 \ ATOM 48 C LEU D 6 -11.356 -26.245 8.980 1.00 1.17 \ ATOM 49 O LEU D 6 -10.396 -26.010 8.236 1.00 1.17 \ ATOM 50 CB LEU D 6 -10.057 -26.170 11.113 1.00 1.17 \ ATOM 51 CG LEU D 6 -10.561 -24.807 11.636 1.00 1.17 \ ATOM 52 CD1 LEU D 6 -11.772 -24.949 12.556 1.00 1.17 \ ATOM 53 CD2 LEU D 6 -9.443 -24.109 12.353 1.00 1.17 \ ATOM 54 N CYS D 7 -12.612 -25.923 8.693 1.00 1.69 \ ATOM 55 CA CYS D 7 -13.037 -25.474 7.375 1.00 1.69 \ ATOM 56 C CYS D 7 -13.846 -24.185 7.464 1.00 1.69 \ ATOM 57 O CYS D 7 -14.185 -23.693 8.545 1.00 1.69 \ ATOM 58 CB CYS D 7 -13.844 -26.570 6.679 1.00 1.69 \ ATOM 59 SG CYS D 7 -12.909 -28.080 6.429 1.00 1.69 \ ATOM 60 N GLY D 8 -14.068 -23.603 6.287 1.00 0.76 \ ATOM 61 CA GLY D 8 -14.978 -22.486 6.099 1.00 0.76 \ ATOM 62 C GLY D 8 -14.628 -21.274 6.936 1.00 0.76 \ ATOM 63 O GLY D 8 -13.461 -20.983 7.203 1.00 0.76 \ ATOM 64 N SER D 9 -15.663 -20.560 7.380 1.00 -0.47 \ ATOM 65 CA SER D 9 -15.438 -19.335 8.135 1.00 -0.47 \ ATOM 66 C SER D 9 -14.744 -19.625 9.456 1.00 -0.47 \ ATOM 67 O SER D 9 -14.049 -18.755 9.994 1.00 -0.47 \ ATOM 68 CB SER D 9 -16.757 -18.609 8.395 1.00 -0.47 \ ATOM 69 OG SER D 9 -17.602 -19.400 9.211 1.00 -0.47 \ ATOM 70 N HIS D 10 -14.927 -20.833 9.995 1.00 -0.23 \ ATOM 71 CA HIS D 10 -14.275 -21.187 11.255 1.00 -0.23 \ ATOM 72 C HIS D 10 -12.761 -21.203 11.095 1.00 -0.23 \ ATOM 73 O HIS D 10 -12.032 -20.743 11.982 1.00 -0.23 \ ATOM 74 CB HIS D 10 -14.797 -22.536 11.750 1.00 -0.23 \ ATOM 75 CG HIS D 10 -16.205 -22.482 12.260 1.00 -0.23 \ ATOM 76 ND1 HIS D 10 -16.887 -23.602 12.686 1.00 -0.23 \ ATOM 77 CD2 HIS D 10 -17.070 -21.445 12.383 1.00 -0.23 \ ATOM 78 CE1 HIS D 10 -18.103 -23.256 13.068 1.00 -0.23 \ ATOM 79 NE2 HIS D 10 -18.241 -21.953 12.895 1.00 -0.23 \ ATOM 80 N LEU D 11 -12.273 -21.672 9.938 1.00 1.69 \ ATOM 81 CA LEU D 11 -10.836 -21.660 9.684 1.00 1.69 \ ATOM 82 C LEU D 11 -10.319 -20.223 9.580 1.00 1.69 \ ATOM 83 O LEU D 11 -9.275 -19.880 10.156 1.00 1.69 \ ATOM 84 CB LEU D 11 -10.523 -22.455 8.403 1.00 1.69 \ ATOM 85 CG LEU D 11 -9.063 -22.475 7.926 1.00 1.69 \ ATOM 86 CD1 LEU D 11 -8.136 -23.019 9.006 1.00 1.69 \ ATOM 87 CD2 LEU D 11 -8.875 -23.255 6.606 1.00 1.69 \ ATOM 88 N VAL D 12 -11.050 -19.361 8.868 1.00 0.76 \ ATOM 89 CA VAL D 12 -10.646 -17.962 8.728 1.00 0.76 \ ATOM 90 C VAL D 12 -10.668 -17.245 10.082 1.00 0.76 \ ATOM 91 O VAL D 12 -9.716 -16.539 10.438 1.00 0.76 \ ATOM 92 CB VAL D 12 -11.558 -17.268 7.694 1.00 0.76 \ ATOM 93 CG1 VAL D 12 -11.153 -15.812 7.493 1.00 0.76 \ ATOM 94 CG2 VAL D 12 -11.505 -18.016 6.347 1.00 0.76 \ ATOM 95 N GLU D 13 -11.702 -17.484 10.893 1.00 0.64 \ ATOM 96 CA GLU D 13 -11.791 -16.826 12.198 1.00 0.64 \ ATOM 97 C GLU D 13 -10.676 -17.265 13.129 1.00 0.64 \ ATOM 98 O GLU D 13 -10.092 -16.440 13.848 1.00 0.64 \ ATOM 99 CB GLU D 13 -13.111 -17.151 12.895 1.00 0.64 \ ATOM 100 CG GLU D 13 -14.393 -16.562 12.355 1.00 0.64 \ ATOM 101 CD GLU D 13 -15.591 -17.284 12.981 1.00 0.64 \ ATOM 102 OE1 GLU D 13 -16.040 -16.850 14.060 1.00 0.64 \ ATOM 103 OE2 GLU D 13 -16.049 -18.312 12.441 1.00 0.64 \ ATOM 104 N ALA D 14 -10.378 -18.566 13.147 1.00 0.02 \ ATOM 105 CA ALA D 14 -9.328 -19.055 14.033 1.00 0.02 \ ATOM 106 C ALA D 14 -7.974 -18.479 13.653 1.00 0.02 \ ATOM 107 O ALA D 14 -7.240 -17.994 14.515 1.00 0.02 \ ATOM 108 CB ALA D 14 -9.285 -20.579 14.011 1.00 0.02 \ ATOM 109 N LEU D 15 -7.655 -18.441 12.354 1.00 1.69 \ ATOM 110 CA LEU D 15 -6.401 -17.815 11.953 1.00 1.69 \ ATOM 111 C LEU D 15 -6.363 -16.333 12.322 1.00 1.69 \ ATOM 112 O LEU D 15 -5.330 -15.824 12.773 1.00 1.69 \ ATOM 113 CB LEU D 15 -6.181 -17.995 10.454 1.00 1.69 \ ATOM 114 CG LEU D 15 -4.868 -17.384 9.954 1.00 1.69 \ ATOM 115 CD1 LEU D 15 -3.666 -18.074 10.566 1.00 1.69 \ ATOM 116 CD2 LEU D 15 -4.832 -17.485 8.407 1.00 1.69 \ ATOM 117 N TYR D 16 -7.482 -15.627 12.128 1.00 -0.21 \ ATOM 118 CA TYR D 16 -7.579 -14.213 12.475 1.00 -0.21 \ ATOM 119 C TYR D 16 -7.253 -14.007 13.946 1.00 -0.21 \ ATOM 120 O TYR D 16 -6.477 -13.111 14.307 1.00 -0.21 \ ATOM 121 CB TYR D 16 -8.993 -13.741 12.145 1.00 -0.21 \ ATOM 122 CG TYR D 16 -9.310 -12.270 12.179 1.00 -0.21 \ ATOM 123 CD1 TYR D 16 -8.671 -11.401 11.297 1.00 -0.21 \ ATOM 124 CD2 TYR D 16 -10.336 -11.760 12.988 1.00 -0.21 \ ATOM 125 CE1 TYR D 16 -8.982 -10.045 11.251 1.00 -0.21 \ ATOM 126 CE2 TYR D 16 -10.676 -10.395 12.946 1.00 -0.21 \ ATOM 127 CZ TYR D 16 -9.989 -9.547 12.056 1.00 -0.21 \ ATOM 128 OH TYR D 16 -10.268 -8.198 11.969 1.00 -0.21 \ ATOM 129 N LEU D 17 -7.792 -14.876 14.801 1.00 -0.24 \ ATOM 130 CA LEU D 17 -7.566 -14.767 16.238 1.00 -0.24 \ ATOM 131 C LEU D 17 -6.127 -15.108 16.622 1.00 -0.24 \ ATOM 132 O LEU D 17 -5.582 -14.510 17.561 1.00 -0.24 \ ATOM 133 CB LEU D 17 -8.559 -15.666 16.978 1.00 -0.24 \ ATOM 134 CG LEU D 17 -10.008 -15.163 16.956 1.00 -0.24 \ ATOM 135 CD1 LEU D 17 -10.963 -16.145 17.595 1.00 -0.24 \ ATOM 136 CD2 LEU D 17 -10.063 -13.852 17.714 1.00 -0.24 \ ATOM 137 N VAL D 18 -5.516 -16.105 15.964 1.00 0.30 \ ATOM 138 CA VAL D 18 -4.139 -16.481 16.300 1.00 0.30 \ ATOM 139 C VAL D 18 -3.180 -15.334 15.997 1.00 0.30 \ ATOM 140 O VAL D 18 -2.363 -14.933 16.841 1.00 0.30 \ ATOM 141 CB VAL D 18 -3.713 -17.730 15.507 1.00 0.30 \ ATOM 142 CG1 VAL D 18 -2.176 -17.921 15.589 1.00 0.30 \ ATOM 143 CG2 VAL D 18 -4.444 -18.977 15.976 1.00 0.30 \ ATOM 144 N CYS D 19 -3.290 -14.749 14.796 1.00 1.69 \ ATOM 145 CA CYS D 19 -2.306 -13.763 14.385 1.00 1.69 \ ATOM 146 C CYS D 19 -2.610 -12.384 14.956 1.00 1.69 \ ATOM 147 O CYS D 19 -1.686 -11.600 15.166 1.00 1.69 \ ATOM 148 CB CYS D 19 -2.229 -13.732 12.845 1.00 1.69 \ ATOM 149 SG CYS D 19 -1.761 -15.359 12.200 1.00 1.69 \ ATOM 150 N GLY D 20 -3.863 -12.111 15.298 1.00 -0.12 \ ATOM 151 CA GLY D 20 -4.173 -10.863 15.989 1.00 -0.12 \ ATOM 152 C GLY D 20 -3.704 -9.643 15.226 1.00 -0.12 \ ATOM 153 O GLY D 20 -3.926 -9.514 14.015 1.00 -0.12 \ ATOM 154 N GLU D 21 -3.013 -8.738 15.925 1.00 0.18 \ ATOM 155 CA GLU D 21 -2.550 -7.500 15.291 1.00 0.18 \ ATOM 156 C GLU D 21 -1.479 -7.717 14.227 1.00 0.18 \ ATOM 157 O GLU D 21 -1.214 -6.786 13.461 1.00 0.18 \ ATOM 158 CB GLU D 21 -1.991 -6.518 16.334 1.00 0.18 \ ATOM 159 CG GLU D 21 -3.015 -5.959 17.291 1.00 0.18 \ ATOM 160 CD GLU D 21 -2.364 -5.247 18.474 1.00 0.18 \ ATOM 161 OE1 GLU D 21 -3.091 -4.814 19.389 1.00 0.18 \ ATOM 162 OE2 GLU D 21 -1.119 -5.119 18.503 1.00 0.18 \ ATOM 163 N ARG D 22 -0.845 -8.896 14.169 1.00 -0.58 \ ATOM 164 CA ARG D 22 0.199 -9.145 13.176 1.00 -0.58 \ ATOM 165 C ARG D 22 -0.354 -9.252 11.764 1.00 -0.58 \ ATOM 166 O ARG D 22 0.331 -8.873 10.806 1.00 -0.58 \ ATOM 167 CB ARG D 22 0.957 -10.436 13.491 1.00 -0.58 \ ATOM 168 CG ARG D 22 1.768 -10.404 14.763 1.00 -0.58 \ ATOM 169 CD ARG D 22 2.311 -11.782 15.064 1.00 -0.58 \ ATOM 170 NE ARG D 22 1.296 -12.602 15.719 1.00 -0.58 \ ATOM 171 CZ ARG D 22 1.471 -13.863 16.104 1.00 -0.58 \ ATOM 172 NH1 ARG D 22 2.633 -14.473 15.912 1.00 -0.58 \ ATOM 173 NH2 ARG D 22 0.485 -14.507 16.703 1.00 -0.58 \ ATOM 174 N GLY D 23 -1.575 -9.758 11.617 1.00 1.69 \ ATOM 175 CA GLY D 23 -2.097 -10.148 10.316 1.00 1.69 \ ATOM 176 C GLY D 23 -1.517 -11.492 9.909 1.00 1.69 \ ATOM 177 O GLY D 23 -0.664 -12.058 10.584 1.00 1.69 \ ATOM 178 N PHE D 24 -1.932 -11.978 8.735 1.00 1.16 \ ATOM 179 CA PHE D 24 -1.482 -13.285 8.289 1.00 1.16 \ ATOM 180 C PHE D 24 -1.177 -13.228 6.799 1.00 1.16 \ ATOM 181 O PHE D 24 -1.620 -12.331 6.084 1.00 1.16 \ ATOM 182 CB PHE D 24 -2.491 -14.419 8.598 1.00 1.16 \ ATOM 183 CG PHE D 24 -3.919 -14.168 8.127 1.00 1.16 \ ATOM 184 CD1 PHE D 24 -4.310 -14.437 6.814 1.00 1.16 \ ATOM 185 CD2 PHE D 24 -4.878 -13.715 9.024 1.00 1.16 \ ATOM 186 CE1 PHE D 24 -5.622 -14.243 6.420 1.00 1.16 \ ATOM 187 CE2 PHE D 24 -6.192 -13.515 8.634 1.00 1.16 \ ATOM 188 CZ PHE D 24 -6.566 -13.782 7.319 1.00 1.16 \ ATOM 189 N PHE D 25 -0.393 -14.204 6.370 1.00 0.51 \ ATOM 190 CA PHE D 25 0.085 -14.387 5.011 1.00 0.51 \ ATOM 191 C PHE D 25 -0.583 -15.640 4.464 1.00 0.51 \ ATOM 192 O PHE D 25 -1.110 -16.458 5.225 1.00 0.51 \ ATOM 193 CB PHE D 25 1.615 -14.506 5.024 1.00 0.51 \ ATOM 194 CG PHE D 25 2.286 -14.007 3.779 1.00 0.51 \ ATOM 195 CD1 PHE D 25 2.149 -12.680 3.406 1.00 0.51 \ ATOM 196 CD2 PHE D 25 3.106 -14.835 3.034 1.00 0.51 \ ATOM 197 CE1 PHE D 25 2.778 -12.198 2.258 1.00 0.51 \ ATOM 198 CE2 PHE D 25 3.739 -14.360 1.884 1.00 0.51 \ ATOM 199 CZ PHE D 25 3.573 -13.038 1.503 1.00 0.51 \ ATOM 200 N TYR D 26 -0.641 -15.746 3.132 1.00 -0.23 \ ATOM 201 CA TYR D 26 -1.275 -16.895 2.502 1.00 -0.23 \ ATOM 202 C TYR D 26 -0.436 -18.167 2.559 1.00 -0.23 \ ATOM 203 O TYR D 26 -0.961 -19.243 2.253 1.00 -0.23 \ ATOM 204 CB TYR D 26 -1.575 -16.580 1.026 1.00 -0.23 \ ATOM 205 CG TYR D 26 -0.339 -16.426 0.174 1.00 -0.23 \ ATOM 206 CD1 TYR D 26 0.330 -15.204 0.096 1.00 -0.23 \ ATOM 207 CD2 TYR D 26 0.167 -17.503 -0.572 1.00 -0.23 \ ATOM 208 CE1 TYR D 26 1.469 -15.060 -0.683 1.00 -0.23 \ ATOM 209 CE2 TYR D 26 1.309 -17.356 -1.359 1.00 -0.23 \ ATOM 210 CZ TYR D 26 1.952 -16.136 -1.403 1.00 -0.23 \ ATOM 211 OH TYR D 26 3.086 -15.980 -2.177 1.00 -0.23 \ ATOM 212 N THR D 27 0.833 -18.084 2.939 1.00 -0.98 \ ATOM 213 CA THR D 27 1.687 -19.262 2.977 1.00 -0.98 \ ATOM 214 C THR D 27 2.555 -19.129 4.211 1.00 -0.98 \ ATOM 215 O THR D 27 2.889 -18.008 4.617 1.00 -0.98 \ ATOM 216 CB THR D 27 2.534 -19.376 1.688 1.00 -0.98 \ ATOM 217 OG1 THR D 27 3.483 -20.446 1.796 1.00 -0.98 \ ATOM 218 CG2 THR D 27 3.298 -18.083 1.429 1.00 -0.98 \ ATOM 219 N PRO D 28 2.928 -20.241 4.856 1.00 -0.78 \ ATOM 220 CA PRO D 28 3.582 -20.167 6.166 1.00 -0.78 \ ATOM 221 C PRO D 28 4.836 -19.306 6.225 1.00 -0.78 \ ATOM 222 O PRO D 28 5.559 -19.140 5.238 1.00 -0.78 \ ATOM 223 CB PRO D 28 3.905 -21.632 6.476 1.00 -0.78 \ ATOM 224 CG PRO D 28 2.864 -22.380 5.786 1.00 -0.78 \ ATOM 225 CD PRO D 28 2.644 -21.637 4.484 1.00 -0.78 \ ATOM 226 N LYS D 29 5.025 -18.702 7.402 1.00 -0.90 \ ATOM 227 CA LYS D 29 6.160 -17.881 7.800 1.00 -0.90 \ ATOM 228 C LYS D 29 7.318 -18.776 8.237 1.00 -0.90 \ ATOM 229 O LYS D 29 7.133 -19.966 8.512 1.00 -0.90 \ ATOM 230 CB LYS D 29 5.768 -16.940 8.954 1.00 -0.90 \ ATOM 231 CG LYS D 29 6.279 -17.386 10.334 1.00 -0.90 \ ATOM 232 CD LYS D 29 5.463 -16.815 11.492 1.00 -0.90 \ ATOM 233 CE LYS D 29 5.885 -15.384 11.829 1.00 -0.90 \ ATOM 234 NZ LYS D 29 7.266 -15.289 12.385 1.00 -0.90 \ ATOM 235 N THR D 30 8.513 -18.173 8.305 1.00 -1.45 \ ATOM 236 CA THR D 30 9.800 -18.826 8.638 1.00 -1.45 \ ATOM 237 C THR D 30 10.410 -19.473 7.386 1.00 -1.45 \ ATOM 238 O THR D 30 10.126 -19.073 6.250 1.00 -1.45 \ ATOM 239 CB THR D 30 9.670 -19.897 9.778 1.00 -1.45 \ ATOM 240 OG1 THR D 30 8.734 -19.447 10.762 1.00 -1.45 \ ATOM 241 CG2 THR D 30 10.979 -20.152 10.476 1.00 -1.45 \ ATOM 242 OXT THR D 30 11.219 -20.403 7.467 1.00 -1.45 \ """, "e6h3mD1_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e6h3mD1_csv", state=0, origin=1) cmd.zoom("e6h3mD1_csv", animate=-1)