cmd.read_pdbstr("""\ ATOM 1 N LYS A 487 7.089 29.890 1.004 1.00 -1.00 \ ATOM 2 CA LYS A 487 7.734 29.572 -0.272 1.00 -1.00 \ ATOM 3 C LYS A 487 8.718 30.683 -0.595 1.00 -1.00 \ ATOM 4 O LYS A 487 8.433 31.578 -1.405 1.00 -1.00 \ ATOM 5 CB LYS A 487 6.702 29.397 -1.386 1.00 -1.00 \ ATOM 6 CG LYS A 487 5.745 28.232 -1.153 1.00 -1.00 \ ATOM 7 CD LYS A 487 4.758 28.094 -2.296 1.00 -1.00 \ ATOM 8 CE LYS A 487 3.842 26.893 -2.091 1.00 -1.00 \ ATOM 9 NZ LYS A 487 2.860 26.766 -3.199 1.00 -1.00 \ ATOM 10 N PRO A 488 9.906 30.663 0.022 1.00 1.39 \ ATOM 11 CA PRO A 488 10.824 31.799 -0.092 1.00 1.39 \ ATOM 12 C PRO A 488 11.707 31.790 -1.331 1.00 1.39 \ ATOM 13 O PRO A 488 12.518 32.707 -1.486 1.00 1.39 \ ATOM 14 CB PRO A 488 11.673 31.667 1.182 1.00 1.39 \ ATOM 15 CG PRO A 488 11.742 30.200 1.410 1.00 1.39 \ ATOM 16 CD PRO A 488 10.411 29.630 0.946 1.00 1.39 \ ATOM 17 N PHE A 489 11.588 30.805 -2.217 1.00 -0.66 \ ATOM 18 CA PHE A 489 12.463 30.692 -3.382 1.00 -0.66 \ ATOM 19 C PHE A 489 11.669 31.008 -4.647 1.00 -0.66 \ ATOM 20 O PHE A 489 10.820 30.216 -5.070 1.00 -0.66 \ ATOM 21 CB PHE A 489 13.091 29.302 -3.437 1.00 -0.66 \ ATOM 22 CG PHE A 489 13.743 28.892 -2.145 1.00 -0.66 \ ATOM 23 CD1 PHE A 489 13.240 27.839 -1.397 1.00 -0.66 \ ATOM 24 CD2 PHE A 489 14.843 29.588 -1.661 1.00 -0.66 \ ATOM 25 CE1 PHE A 489 13.837 27.469 -0.198 1.00 -0.66 \ ATOM 26 CE2 PHE A 489 15.442 29.231 -0.468 1.00 -0.66 \ ATOM 27 CZ PHE A 489 14.935 28.165 0.267 1.00 -0.66 \ ATOM 28 N SER A 490 11.962 32.155 -5.261 1.00 -1.49 \ ATOM 29 CA SER A 490 11.181 32.685 -6.373 1.00 -1.49 \ ATOM 30 C SER A 490 11.994 32.639 -7.663 1.00 -1.49 \ ATOM 31 O SER A 490 13.095 33.198 -7.728 1.00 -1.49 \ ATOM 32 CB SER A 490 10.736 34.117 -6.073 1.00 -1.49 \ ATOM 33 OG SER A 490 10.199 34.729 -7.232 1.00 -1.49 \ ATOM 34 N CYS A 491 11.441 31.998 -8.693 1.00 1.39 \ ATOM 35 CA CYS A 491 12.110 31.914 -9.987 1.00 1.39 \ ATOM 36 C CYS A 491 12.382 33.308 -10.536 1.00 1.39 \ ATOM 37 O CYS A 491 11.435 34.090 -10.717 1.00 1.39 \ ATOM 38 CB CYS A 491 11.277 31.128 -11.001 1.00 1.39 \ ATOM 39 SG CYS A 491 12.056 31.086 -12.635 1.00 1.39 \ ATOM 40 N PRO A 492 13.637 33.662 -10.825 1.00 -1.53 \ ATOM 41 CA PRO A 492 13.917 35.001 -11.359 1.00 -1.53 \ ATOM 42 C PRO A 492 13.424 35.204 -12.778 1.00 -1.53 \ ATOM 43 O PRO A 492 13.412 36.349 -13.248 1.00 -1.53 \ ATOM 44 CB PRO A 492 15.444 35.094 -11.289 1.00 -1.53 \ ATOM 45 CG PRO A 492 15.900 33.671 -11.402 1.00 -1.53 \ ATOM 46 CD PRO A 492 14.864 32.856 -10.675 1.00 -1.53 \ ATOM 47 N GLU A 493 13.018 34.141 -13.471 1.00 -0.56 \ ATOM 48 CA GLU A 493 12.546 34.273 -14.845 1.00 -0.56 \ ATOM 49 C GLU A 493 11.032 34.419 -14.939 1.00 -0.56 \ ATOM 50 O GLU A 493 10.543 35.181 -15.778 1.00 -0.56 \ ATOM 51 CB GLU A 493 13.004 33.075 -15.683 1.00 -0.56 \ ATOM 52 CG GLU A 493 14.516 32.883 -15.722 1.00 -0.56 \ ATOM 53 CD GLU A 493 15.251 34.094 -16.272 1.00 -0.56 \ ATOM 54 OE1 GLU A 493 14.680 34.810 -17.123 1.00 -0.56 \ ATOM 55 OE2 GLU A 493 16.402 34.332 -15.848 1.00 -0.56 \ ATOM 56 N CYS A 494 10.270 33.713 -14.097 1.00 1.39 \ ATOM 57 CA CYS A 494 8.814 33.767 -14.181 1.00 1.39 \ ATOM 58 C CYS A 494 8.112 34.039 -12.860 1.00 1.39 \ ATOM 59 O CYS A 494 6.889 34.214 -12.867 1.00 1.39 \ ATOM 60 CB CYS A 494 8.257 32.461 -14.766 1.00 1.39 \ ATOM 61 SG CYS A 494 8.317 31.053 -13.638 1.00 1.39 \ ATOM 62 N GLY A 495 8.822 34.058 -11.736 1.00 0.48 \ ATOM 63 CA GLY A 495 8.217 34.401 -10.466 1.00 0.48 \ ATOM 64 C GLY A 495 7.502 33.280 -9.740 1.00 0.48 \ ATOM 65 O GLY A 495 6.933 33.527 -8.671 1.00 0.48 \ ATOM 66 N LEU A 496 7.503 32.061 -10.272 1.00 0.53 \ ATOM 67 CA LEU A 496 6.913 30.942 -9.550 1.00 0.53 \ ATOM 68 C LEU A 496 7.691 30.684 -8.265 1.00 0.53 \ ATOM 69 O LEU A 496 8.925 30.635 -8.274 1.00 0.53 \ ATOM 70 CB LEU A 496 6.904 29.694 -10.431 1.00 0.53 \ ATOM 71 CG LEU A 496 6.321 28.435 -9.789 1.00 0.53 \ ATOM 72 CD1 LEU A 496 4.934 28.708 -9.213 1.00 0.53 \ ATOM 73 CD2 LEU A 496 6.273 27.302 -10.806 1.00 0.53 \ ATOM 74 N GLN A 497 6.969 30.527 -7.157 1.00 -1.50 \ ATOM 75 CA GLN A 497 7.578 30.392 -5.838 1.00 -1.50 \ ATOM 76 C GLN A 497 7.600 28.933 -5.399 1.00 -1.50 \ ATOM 77 O GLN A 497 6.666 28.176 -5.675 1.00 -1.50 \ ATOM 78 CB GLN A 497 6.824 31.231 -4.806 1.00 -1.50 \ ATOM 79 CG GLN A 497 6.885 32.727 -5.082 1.00 -1.50 \ ATOM 80 CD GLN A 497 5.872 33.508 -4.273 1.00 -1.50 \ ATOM 81 OE1 GLN A 497 6.222 34.188 -3.309 1.00 -1.50 \ ATOM 82 NE2 GLN A 497 4.607 33.414 -4.661 1.00 -1.50 \ ATOM 83 N PHE A 498 8.666 28.550 -4.697 1.00 1.39 \ ATOM 84 CA PHE A 498 8.850 27.181 -4.238 1.00 1.39 \ ATOM 85 C PHE A 498 9.208 27.165 -2.758 1.00 1.39 \ ATOM 86 O PHE A 498 9.903 28.054 -2.256 1.00 1.39 \ ATOM 87 CB PHE A 498 9.951 26.459 -5.029 1.00 1.39 \ ATOM 88 CG PHE A 498 9.678 26.349 -6.501 1.00 1.39 \ ATOM 89 CD1 PHE A 498 10.017 27.380 -7.362 1.00 1.39 \ ATOM 90 CD2 PHE A 498 9.096 25.206 -7.027 1.00 1.39 \ ATOM 91 CE1 PHE A 498 9.774 27.277 -8.713 1.00 1.39 \ ATOM 92 CE2 PHE A 498 8.851 25.100 -8.381 1.00 1.39 \ ATOM 93 CZ PHE A 498 9.193 26.137 -9.225 1.00 1.39 \ ATOM 94 N ALA A 499 8.724 26.133 -2.061 1.00 -0.57 \ ATOM 95 CA ALA A 499 9.157 25.902 -0.687 1.00 -0.57 \ ATOM 96 C ALA A 499 10.579 25.361 -0.635 1.00 -0.57 \ ATOM 97 O ALA A 499 11.276 25.544 0.369 1.00 -0.57 \ ATOM 98 CB ALA A 499 8.206 24.927 0.010 1.00 -0.57 \ ATOM 99 N ARG A 500 11.019 24.698 -1.699 1.00 -1.52 \ ATOM 100 CA ARG A 500 12.282 23.980 -1.727 1.00 -1.52 \ ATOM 101 C ARG A 500 13.190 24.579 -2.789 1.00 -1.52 \ ATOM 102 O ARG A 500 12.796 24.687 -3.956 1.00 -1.52 \ ATOM 103 CB ARG A 500 12.057 22.498 -2.025 1.00 -1.52 \ ATOM 104 CG ARG A 500 11.249 21.767 -0.983 1.00 -1.52 \ ATOM 105 CD ARG A 500 12.151 20.885 -0.160 1.00 -1.52 \ ATOM 106 NE ARG A 500 12.961 20.013 -1.005 1.00 -1.52 \ ATOM 107 CZ ARG A 500 12.655 18.750 -1.290 1.00 -1.52 \ ATOM 108 NH1 ARG A 500 11.553 18.204 -0.794 1.00 -1.52 \ ATOM 109 NH2 ARG A 500 13.458 18.032 -2.064 1.00 -1.52 \ ATOM 110 N LEU A 501 14.406 24.945 -2.381 1.00 -0.61 \ ATOM 111 CA LEU A 501 15.409 25.384 -3.344 1.00 -0.61 \ ATOM 112 C LEU A 501 15.692 24.300 -4.375 1.00 -0.61 \ ATOM 113 O LEU A 501 15.998 24.609 -5.533 1.00 -0.61 \ ATOM 114 CB LEU A 501 16.690 25.788 -2.612 1.00 -0.61 \ ATOM 115 CG LEU A 501 17.796 26.389 -3.486 1.00 -0.61 \ ATOM 116 CD1 LEU A 501 17.287 27.632 -4.200 1.00 -0.61 \ ATOM 117 CD2 LEU A 501 19.049 26.699 -2.672 1.00 -0.61 \ ATOM 118 N ASP A 502 15.593 23.030 -3.968 1.00 -0.06 \ ATOM 119 CA ASP A 502 15.654 21.904 -4.896 1.00 -0.06 \ ATOM 120 C ASP A 502 14.741 22.114 -6.089 1.00 -0.06 \ ATOM 121 O ASP A 502 15.176 22.071 -7.245 1.00 -0.06 \ ATOM 122 CB ASP A 502 15.244 20.615 -4.182 1.00 -0.06 \ ATOM 123 CG ASP A 502 16.354 20.027 -3.380 1.00 -0.06 \ ATOM 124 OD1 ASP A 502 17.477 20.555 -3.484 1.00 -0.06 \ ATOM 125 OD2 ASP A 502 16.103 19.039 -2.659 1.00 -0.06 \ ATOM 126 N ASN A 503 13.451 22.305 -5.814 1.00 -0.04 \ ATOM 127 CA ASN A 503 12.470 22.393 -6.885 1.00 -0.04 \ ATOM 128 C ASN A 503 12.725 23.601 -7.776 1.00 -0.04 \ ATOM 129 O ASN A 503 12.435 23.552 -8.976 1.00 -0.04 \ ATOM 130 CB ASN A 503 11.054 22.444 -6.303 1.00 -0.04 \ ATOM 131 CG ASN A 503 10.686 21.190 -5.510 1.00 -0.04 \ ATOM 132 OD1 ASN A 503 9.717 21.193 -4.748 1.00 -0.04 \ ATOM 133 ND2 ASN A 503 11.454 20.121 -5.684 1.00 -0.04 \ ATOM 134 N LEU A 504 13.263 24.692 -7.215 1.00 0.55 \ ATOM 135 CA LEU A 504 13.574 25.859 -8.038 1.00 0.55 \ ATOM 136 C LEU A 504 14.734 25.575 -8.984 1.00 0.55 \ ATOM 137 O LEU A 504 14.689 25.959 -10.160 1.00 0.55 \ ATOM 138 CB LEU A 504 13.892 27.068 -7.158 1.00 0.55 \ ATOM 139 CG LEU A 504 14.436 28.277 -7.925 1.00 0.55 \ ATOM 140 CD1 LEU A 504 13.403 28.764 -8.931 1.00 0.55 \ ATOM 141 CD2 LEU A 504 14.860 29.399 -6.978 1.00 0.55 \ ATOM 142 N LYS A 505 15.783 24.911 -8.488 1.00 -0.05 \ ATOM 143 CA LYS A 505 16.895 24.516 -9.350 1.00 -0.05 \ ATOM 144 C LYS A 505 16.404 23.700 -10.536 1.00 -0.05 \ ATOM 145 O LYS A 505 16.738 23.994 -11.691 1.00 -0.05 \ ATOM 146 CB LYS A 505 17.916 23.697 -8.565 1.00 -0.05 \ ATOM 147 CG LYS A 505 18.647 24.418 -7.467 1.00 -0.05 \ ATOM 148 CD LYS A 505 19.904 23.633 -7.122 1.00 -0.05 \ ATOM 149 CE LYS A 505 20.847 23.584 -8.322 1.00 -0.05 \ ATOM 150 NZ LYS A 505 21.861 22.492 -8.248 1.00 -0.05 \ ATOM 151 N ALA A 506 15.627 22.650 -10.263 1.00 -1.00 \ ATOM 152 CA ALA A 506 15.093 21.825 -11.341 1.00 -1.00 \ ATOM 153 C ALA A 506 14.188 22.636 -12.257 1.00 -1.00 \ ATOM 154 O ALA A 506 14.191 22.439 -13.476 1.00 -1.00 \ ATOM 155 CB ALA A 506 14.335 20.632 -10.761 1.00 -1.00 \ ATOM 156 N HIS A 507 13.406 23.554 -11.684 1.00 1.39 \ ATOM 157 CA HIS A 507 12.509 24.375 -12.491 1.00 1.39 \ ATOM 158 C HIS A 507 13.286 25.253 -13.463 1.00 1.39 \ ATOM 159 O HIS A 507 12.880 25.422 -14.620 1.00 1.39 \ ATOM 160 CB HIS A 507 11.627 25.229 -11.579 1.00 1.39 \ ATOM 161 CG HIS A 507 10.893 26.323 -12.292 1.00 1.39 \ ATOM 162 ND1 HIS A 507 9.769 26.094 -13.055 1.00 1.39 \ ATOM 163 CD2 HIS A 507 11.122 27.656 -12.348 1.00 1.39 \ ATOM 164 CE1 HIS A 507 9.338 27.239 -13.555 1.00 1.39 \ ATOM 165 NE2 HIS A 507 10.143 28.202 -13.143 1.00 1.39 \ ATOM 166 N LEU A 508 14.409 25.819 -13.013 1.00 -0.57 \ ATOM 167 CA LEU A 508 15.185 26.702 -13.878 1.00 -0.57 \ ATOM 168 C LEU A 508 15.801 25.951 -15.051 1.00 -0.57 \ ATOM 169 O LEU A 508 16.068 26.553 -16.097 1.00 -0.57 \ ATOM 170 CB LEU A 508 16.268 27.414 -13.065 1.00 -0.57 \ ATOM 171 CG LEU A 508 15.743 28.620 -12.285 1.00 -0.57 \ ATOM 172 CD1 LEU A 508 16.691 29.019 -11.160 1.00 -0.57 \ ATOM 173 CD2 LEU A 508 15.509 29.794 -13.221 1.00 -0.57 \ ATOM 174 N LYS A 509 16.032 24.643 -14.904 1.00 -0.56 \ ATOM 175 CA LYS A 509 16.541 23.867 -16.031 1.00 -0.56 \ ATOM 176 C LYS A 509 15.551 23.845 -17.187 1.00 -0.56 \ ATOM 177 O LYS A 509 15.956 23.705 -18.346 1.00 -0.56 \ ATOM 178 CB LYS A 509 16.874 22.441 -15.594 1.00 -0.56 \ ATOM 179 CG LYS A 509 18.045 22.354 -14.632 1.00 -0.56 \ ATOM 180 CD LYS A 509 18.739 21.004 -14.730 1.00 -0.56 \ ATOM 181 CE LYS A 509 19.979 20.956 -13.848 1.00 -0.56 \ ATOM 182 NZ LYS A 509 20.873 19.811 -14.190 1.00 -0.56 \ ATOM 183 N ILE A 510 14.257 23.988 -16.895 1.00 -0.07 \ ATOM 184 CA ILE A 510 13.258 24.037 -17.958 1.00 -0.07 \ ATOM 185 C ILE A 510 13.397 25.323 -18.761 1.00 -0.07 \ ATOM 186 O ILE A 510 13.268 25.318 -19.992 1.00 -0.07 \ ATOM 187 CB ILE A 510 11.845 23.883 -17.368 1.00 -0.07 \ ATOM 188 CG1 ILE A 510 11.725 22.543 -16.644 1.00 -0.07 \ ATOM 189 CG2 ILE A 510 10.787 24.007 -18.458 1.00 -0.07 \ ATOM 190 CD1 ILE A 510 10.426 22.369 -15.906 1.00 -0.07 \ ATOM 191 N HIS A 511 13.662 26.445 -18.082 1.00 1.39 \ ATOM 192 CA HIS A 511 13.907 27.696 -18.790 1.00 1.39 \ ATOM 193 C HIS A 511 15.134 27.602 -19.688 1.00 1.39 \ ATOM 194 O HIS A 511 15.160 28.204 -20.768 1.00 1.39 \ ATOM 195 CB HIS A 511 14.087 28.849 -17.802 1.00 1.39 \ ATOM 196 CG HIS A 511 12.838 29.238 -17.073 1.00 1.39 \ ATOM 197 ND1 HIS A 511 11.724 29.738 -17.711 1.00 1.39 \ ATOM 198 CD2 HIS A 511 12.543 29.232 -15.751 1.00 1.39 \ ATOM 199 CE1 HIS A 511 10.790 30.007 -16.816 1.00 1.39 \ ATOM 200 NE2 HIS A 511 11.265 29.714 -15.618 1.00 1.39 \ ATOM 201 N SER A 512 16.161 26.864 -19.258 1.00 0.39 \ ATOM 202 CA SER A 512 17.370 26.752 -20.069 1.00 0.39 \ ATOM 203 C SER A 512 17.145 25.847 -21.273 1.00 0.39 \ ATOM 204 O SER A 512 17.582 26.166 -22.385 1.00 0.39 \ ATOM 205 CB SER A 512 18.533 26.242 -19.217 1.00 0.39 \ ATOM 206 OG SER A 512 18.292 24.923 -18.759 1.00 0.39 \ ATOM 207 N LYS A 513 16.467 24.713 -21.075 1.00 0.53 \ ATOM 208 CA LYS A 513 16.120 23.849 -22.198 1.00 0.53 \ ATOM 209 C LYS A 513 15.134 24.517 -23.146 1.00 0.53 \ ATOM 210 O LYS A 513 15.031 24.105 -24.307 1.00 0.53 \ ATOM 211 CB LYS A 513 15.545 22.525 -21.689 1.00 0.53 \ ATOM 212 N GLU A 514 14.408 25.534 -22.679 1.00 -1.00 \ ATOM 213 CA GLU A 514 13.549 26.308 -23.567 1.00 -1.00 \ ATOM 214 C GLU A 514 14.352 27.286 -24.414 1.00 -1.00 \ ATOM 215 O GLU A 514 13.946 27.606 -25.537 1.00 -1.00 \ ATOM 216 CB GLU A 514 12.491 27.057 -22.755 1.00 -1.00 \ ATOM 217 N LYS A 515 15.484 27.761 -23.901 1.00 -1.00 \ ATOM 218 CA LYS A 515 16.336 28.690 -24.633 1.00 -1.00 \ ATOM 219 C LYS A 515 17.383 27.939 -25.451 1.00 -1.00 \ ATOM 220 O LYS A 515 17.066 27.328 -26.473 1.00 -1.00 \ ATOM 221 CB LYS A 515 17.009 29.665 -23.672 1.00 -1.00 \ """, "e6ml7A2_csv") cmd.show_as('cartoon', "all") cmd.spectrum('b', selection="all") cmd.center("e6ml7A2_csv", state=0, origin=1) cmd.zoom("e6ml7A2_csv", animate=-1)