cmd.read_pdbstr("""\\nATOM 1175 N SER B 4 36.087 44.961 -4.314 1.00 43.04 N \ ATOM 1176 CA SER B 4 36.061 43.506 -4.641 1.00 42.63 C \ ATOM 1177 C SER B 4 34.695 43.108 -5.183 1.00 40.25 C \ ATOM 1178 O SER B 4 33.783 43.932 -5.276 1.00 41.07 O \ ATOM 1179 CB SER B 4 36.366 42.673 -3.395 1.00 44.18 C \ ATOM 1180 OG SER B 4 35.329 42.798 -2.435 1.00 46.75 O \ ATOM 1181 N GLY B 5 34.561 41.835 -5.531 1.00 38.09 N \ ATOM 1182 CA GLY B 5 33.307 41.342 -6.059 1.00 35.04 C \ ATOM 1183 C GLY B 5 32.378 40.821 -4.986 1.00 32.73 C \ ATOM 1184 O GLY B 5 31.517 39.991 -5.262 1.00 32.98 O \ ATOM 1185 N ILE B 6 32.542 41.303 -3.757 1.00 31.60 N \ ATOM 1186 CA ILE B 6 31.687 40.863 -2.661 1.00 30.77 C \ ATOM 1187 C ILE B 6 30.783 42.001 -2.203 1.00 28.58 C \ ATOM 1188 O ILE B 6 31.261 43.089 -1.889 1.00 28.89 O \ ATOM 1189 CB ILE B 6 32.515 40.385 -1.451 1.00 32.61 C \ ATOM 1190 CG1 ILE B 6 33.516 39.314 -1.894 1.00 35.20 C \ ATOM 1191 CG2 ILE B 6 31.588 39.832 -0.378 1.00 34.29 C \ ATOM 1192 CD1 ILE B 6 34.470 38.882 -0.799 1.00 36.60 C \ ATOM 1193 N SER B 7 29.482 41.737 -2.174 1.00 26.94 N \ ATOM 1194 CA SER B 7 28.486 42.720 -1.754 1.00 28.73 C \ ATOM 1195 C SER B 7 28.652 43.131 -0.289 1.00 28.40 C \ ATOM 1196 O SER B 7 29.042 42.321 0.556 1.00 27.98 O \ ATOM 1197 CB SER B 7 27.081 42.152 -1.964 1.00 30.07 C \ ATOM 1198 OG SER B 7 26.098 43.097 -1.578 1.00 34.70 O \ ATOM 1199 N GLN B 8 28.339 44.392 -0.001 1.00 27.69 N \ ATOM 1200 CA GLN B 8 28.443 44.947 1.350 1.00 29.62 C \ ATOM 1201 C GLN B 8 27.077 45.290 1.929 1.00 27.61 C \ ATOM 1202 O GLN B 8 26.136 45.607 1.202 1.00 26.37 O \ ATOM 1203 CB GLN B 8 29.272 46.228 1.346 1.00 32.33 C \ ATOM 1204 CG GLN B 8 30.745 46.070 1.086 1.00 40.42 C \ ATOM 1205 CD GLN B 8 31.478 47.370 1.342 1.00 44.86 C \ ATOM 1206 OE1 GLN B 8 31.367 47.951 2.425 1.00 46.55 O \ ATOM 1207 NE2 GLN B 8 32.226 47.839 0.349 1.00 48.13 N \ ATOM 1208 N THR B 9 26.999 45.275 3.254 1.00 27.29 N \ ATOM 1209 CA THR B 9 25.767 45.572 3.967 1.00 27.07 C \ ATOM 1210 C THR B 9 26.116 46.367 5.224 1.00 24.61 C \ ATOM 1211 O THR B 9 27.213 46.238 5.748 1.00 24.83 O \ ATOM 1212 CB THR B 9 25.074 44.258 4.407 1.00 29.94 C \ ATOM 1213 OG1 THR B 9 24.847 43.428 3.258 1.00 33.16 O \ ATOM 1214 CG2 THR B 9 23.762 44.543 5.089 1.00 31.21 C \ ATOM 1215 N VAL B 10 25.194 47.196 5.697 1.00 24.60 N \ ATOM 1216 CA VAL B 10 25.436 47.941 6.931 1.00 23.52 C \ ATOM 1217 C VAL B 10 25.475 46.906 8.062 1.00 21.96 C \ ATOM 1218 O VAL B 10 24.706 45.944 8.040 1.00 23.31 O \ ATOM 1219 CB VAL B 10 24.285 48.938 7.224 1.00 23.28 C \ ATOM 1220 CG1 VAL B 10 24.407 49.497 8.640 1.00 24.14 C \ ATOM 1221 CG2 VAL B 10 24.315 50.078 6.213 1.00 24.73 C \ ATOM 1222 N ILE B 11 26.364 47.094 9.034 1.00 21.82 N \ ATOM 1223 CA ILE B 11 26.454 46.175 10.179 1.00 21.60 C \ ATOM 1224 C ILE B 11 26.570 46.997 11.452 1.00 23.08 C \ ATOM 1225 O ILE B 11 27.468 47.832 11.561 1.00 23.49 O \ ATOM 1226 CB ILE B 11 27.703 45.263 10.111 1.00 23.35 C \ ATOM 1227 CG1 ILE B 11 27.688 44.435 8.828 1.00 23.04 C \ ATOM 1228 CG2 ILE B 11 27.725 44.320 11.324 1.00 23.62 C \ ATOM 1229 CD1 ILE B 11 28.960 43.645 8.602 1.00 23.83 C \ ATOM 1230 N VAL B 12 25.669 46.760 12.401 1.00 22.91 N \ ATOM 1231 CA VAL B 12 25.701 47.472 13.674 1.00 23.74 C \ ATOM 1232 C VAL B 12 26.100 46.494 14.763 1.00 24.10 C \ ATOM 1233 O VAL B 12 25.727 45.320 14.719 1.00 24.40 O \ ATOM 1234 CB VAL B 12 24.337 48.122 14.020 1.00 25.21 C \ ATOM 1235 CG1 VAL B 12 24.040 49.228 13.017 1.00 27.29 C \ ATOM 1236 CG2 VAL B 12 23.225 47.085 14.014 1.00 25.96 C \ ATOM 1237 N GLY B 13 26.865 46.995 15.727 1.00 24.05 N \ ATOM 1238 CA GLY B 13 27.360 46.171 16.812 1.00 24.49 C \ ATOM 1239 C GLY B 13 28.866 46.352 16.861 1.00 24.58 C \ ATOM 1240 O GLY B 13 29.407 47.208 16.165 1.00 24.95 O \ ATOM 1241 N PRO B 14 29.584 45.540 17.643 1.00 25.77 N \ ATOM 1242 CA PRO B 14 29.004 44.471 18.451 1.00 25.82 C \ ATOM 1243 C PRO B 14 28.605 44.905 19.851 1.00 25.90 C \ ATOM 1244 O PRO B 14 29.075 45.926 20.362 1.00 27.58 O \ ATOM 1245 CB PRO B 14 30.123 43.442 18.489 1.00 25.04 C \ ATOM 1246 CG PRO B 14 31.333 44.302 18.599 1.00 28.28 C \ ATOM 1247 CD PRO B 14 31.053 45.427 17.601 1.00 27.56 C \ ATOM 1248 N TRP B 15 27.728 44.113 20.457 1.00 25.62 N \ ATOM 1249 CA TRP B 15 27.293 44.329 21.831 1.00 25.06 C \ ATOM 1250 C TRP B 15 27.839 43.122 22.571 1.00 26.86 C \ ATOM 1251 O TRP B 15 27.740 41.996 22.080 1.00 26.03 O \ ATOM 1252 CB TRP B 15 25.771 44.352 21.937 1.00 25.64 C \ ATOM 1253 CG TRP B 15 25.174 45.637 21.482 1.00 25.70 C \ ATOM 1254 CD1 TRP B 15 25.073 46.797 22.199 1.00 25.88 C \ ATOM 1255 CD2 TRP B 15 24.635 45.913 20.190 1.00 27.24 C \ ATOM 1256 NE1 TRP B 15 24.500 47.781 21.427 1.00 27.24 N \ ATOM 1257 CE2 TRP B 15 24.221 47.263 20.188 1.00 26.38 C \ ATOM 1258 CE3 TRP B 15 24.459 45.149 19.028 1.00 26.45 C \ ATOM 1259 CZ2 TRP B 15 23.642 47.870 19.068 1.00 28.05 C \ ATOM 1260 CZ3 TRP B 15 23.883 45.755 17.913 1.00 29.57 C \ ATOM 1261 CH2 TRP B 15 23.482 47.102 17.945 1.00 28.17 C \ ATOM 1262 N GLY B 16 28.424 43.362 23.736 1.00 27.30 N \ ATOM 1263 CA GLY B 16 28.999 42.279 24.515 1.00 28.48 C \ ATOM 1264 C GLY B 16 30.476 42.545 24.734 1.00 30.67 C \ ATOM 1265 O GLY B 16 30.874 43.695 24.916 1.00 32.39 O \ ATOM 1266 N ALA B 17 31.297 41.500 24.714 1.00 31.76 N \ ATOM 1267 CA ALA B 17 32.732 41.665 24.913 1.00 34.69 C \ ATOM 1268 C ALA B 17 33.368 42.452 23.773 1.00 36.92 C \ ATOM 1269 O ALA B 17 32.924 42.367 22.630 1.00 35.36 O \ ATOM 1270 CB ALA B 17 33.395 40.312 25.028 1.00 34.42 C \ ATOM 1271 N LYS B 18 34.413 43.217 24.074 1.00 41.89 N \ ATOM 1272 CA LYS B 18 35.076 43.998 23.032 1.00 45.90 C \ ATOM 1273 C LYS B 18 36.370 43.322 22.601 1.00 46.99 C \ ATOM 1274 O LYS B 18 36.452 42.826 21.454 1.00 49.00 O \ ATOM 1275 CB LYS B 18 35.363 45.413 23.541 1.00 48.46 C \ ATOM 1276 CG LYS B 18 34.146 46.328 23.531 1.00 51.11 C \ ATOM 1277 CD LYS B 18 34.565 47.772 23.684 1.00 54.28 C \ ATOM 1278 CE LYS B 18 33.365 48.688 23.590 1.00 56.01 C \ ATOM 1279 NZ LYS B 18 33.788 50.111 23.578 1.00 56.93 N \ ATOM 1175 N SER C 4 7.200 55.595 -4.314 1.00 43.04 N \ ATOM 1176 CA SER C 4 7.226 57.050 -4.641 1.00 42.63 C \ ATOM 1177 C SER C 4 8.592 57.448 -5.183 1.00 40.25 C \ ATOM 1178 O SER C 4 9.504 56.624 -5.276 1.00 41.07 O \ ATOM 1179 CB SER C 4 6.921 57.883 -3.395 1.00 44.18 C \ ATOM 1180 OG SER C 4 7.958 57.758 -2.435 1.00 46.75 O \ ATOM 1181 N GLY C 5 8.726 58.721 -5.531 1.00 38.09 N \ ATOM 1182 CA GLY C 5 9.980 59.214 -6.059 1.00 35.04 C \ ATOM 1183 C GLY C 5 10.909 59.735 -4.986 1.00 32.73 C \ ATOM 1184 O GLY C 5 11.770 60.565 -5.262 1.00 32.98 O \ ATOM 1185 N ILE C 6 10.745 59.253 -3.757 1.00 31.60 N \ ATOM 1186 CA ILE C 6 11.600 59.693 -2.661 1.00 30.77 C \ ATOM 1187 C ILE C 6 12.504 58.555 -2.203 1.00 28.58 C \ ATOM 1188 O ILE C 6 12.026 57.467 -1.889 1.00 28.89 O \ ATOM 1189 CB ILE C 6 10.772 60.171 -1.451 1.00 32.61 C \ ATOM 1190 CG1 ILE C 6 9.771 61.242 -1.894 1.00 35.20 C \ ATOM 1191 CG2 ILE C 6 11.699 60.724 -0.378 1.00 34.29 C \ ATOM 1192 CD1 ILE C 6 8.817 61.674 -0.799 1.00 36.60 C \ ATOM 1193 N SER C 7 13.805 58.819 -2.174 1.00 26.94 N \ ATOM 1194 CA SER C 7 14.801 57.836 -1.754 1.00 28.73 C \ ATOM 1195 C SER C 7 14.635 57.425 -0.289 1.00 28.40 C \ ATOM 1196 O SER C 7 14.245 58.235 0.556 1.00 27.98 O \ ATOM 1197 CB SER C 7 16.206 58.404 -1.964 1.00 30.07 C \ ATOM 1198 OG SER C 7 17.189 57.459 -1.578 1.00 34.70 O \ ATOM 1199 N GLN C 8 14.948 56.164 -0.001 1.00 27.69 N \ ATOM 1200 CA GLN C 8 14.844 55.609 1.350 1.00 29.62 C \ ATOM 1201 C GLN C 8 16.210 55.266 1.929 1.00 27.61 C \ ATOM 1202 O GLN C 8 17.151 54.949 1.202 1.00 26.37 O \ ATOM 1203 CB GLN C 8 14.015 54.328 1.346 1.00 32.33 C \ ATOM 1204 CG GLN C 8 12.542 54.486 1.086 1.00 40.42 C \ ATOM 1205 CD GLN C 8 11.809 53.186 1.342 1.00 44.86 C \ ATOM 1206 OE1 GLN C 8 11.920 52.605 2.425 1.00 46.55 O \ ATOM 1207 NE2 GLN C 8 11.061 52.717 0.349 1.00 48.13 N \ ATOM 1208 N THR C 9 16.288 55.281 3.254 1.00 27.29 N \ ATOM 1209 CA THR C 9 17.520 54.984 3.967 1.00 27.07 C \ ATOM 1210 C THR C 9 17.171 54.189 5.224 1.00 24.61 C \ ATOM 1211 O THR C 9 16.074 54.318 5.748 1.00 24.83 O \ ATOM 1212 CB THR C 9 18.213 56.298 4.407 1.00 29.94 C \ ATOM 1213 OG1 THR C 9 18.440 57.128 3.258 1.00 33.16 O \ ATOM 1214 CG2 THR C 9 19.525 56.013 5.089 1.00 31.21 C \ ATOM 1215 N VAL C 10 18.093 53.360 5.697 1.00 24.60 N \ ATOM 1216 CA VAL C 10 17.851 52.615 6.931 1.00 23.52 C \ ATOM 1217 C VAL C 10 17.812 53.650 8.062 1.00 21.96 C \ ATOM 1218 O VAL C 10 18.581 54.612 8.040 1.00 23.31 O \ ATOM 1219 CB VAL C 10 19.002 51.618 7.224 1.00 23.28 C \ ATOM 1220 CG1 VAL C 10 18.880 51.059 8.640 1.00 24.14 C \ ATOM 1221 CG2 VAL C 10 18.972 50.478 6.213 1.00 24.73 C \ ATOM 1222 N ILE C 11 16.923 53.462 9.034 1.00 21.82 N \ ATOM 1223 CA ILE C 11 16.833 54.381 10.179 1.00 21.60 C \ ATOM 1224 C ILE C 11 16.717 53.559 11.452 1.00 23.08 C \ ATOM 1225 O ILE C 11 15.819 52.724 11.561 1.00 23.49 O \ ATOM 1226 CB ILE C 11 15.584 55.293 10.111 1.00 23.35 C \ ATOM 1227 CG1 ILE C 11 15.599 56.121 8.828 1.00 23.04 C \ ATOM 1228 CG2 ILE C 11 15.562 56.236 11.324 1.00 23.62 C \ ATOM 1229 CD1 ILE C 11 14.327 56.911 8.602 1.00 23.83 C \ ATOM 1230 N VAL C 12 17.618 53.796 12.401 1.00 22.91 N \ ATOM 1231 CA VAL C 12 17.586 53.084 13.674 1.00 23.74 C \ ATOM 1232 C VAL C 12 17.187 54.062 14.763 1.00 24.10 C \ ATOM 1233 O VAL C 12 17.560 55.236 14.719 1.00 24.40 O \ ATOM 1234 CB VAL C 12 18.950 52.434 14.020 1.00 25.21 C \ ATOM 1235 CG1 VAL C 12 19.247 51.328 13.017 1.00 27.29 C \ ATOM 1236 CG2 VAL C 12 20.062 53.471 14.014 1.00 25.96 C \ ATOM 1237 N GLY C 13 16.422 53.561 15.727 1.00 24.05 N \ ATOM 1238 CA GLY C 13 15.927 54.385 16.812 1.00 24.49 C \ ATOM 1239 C GLY C 13 14.421 54.204 16.861 1.00 24.58 C \ ATOM 1240 O GLY C 13 13.880 53.348 16.165 1.00 24.95 O \ ATOM 1241 N PRO C 14 13.703 55.016 17.643 1.00 25.77 N \ ATOM 1242 CA PRO C 14 14.283 56.085 18.451 1.00 25.82 C \ ATOM 1243 C PRO C 14 14.682 55.651 19.851 1.00 25.90 C \ ATOM 1244 O PRO C 14 14.212 54.630 20.362 1.00 27.58 O \ ATOM 1245 CB PRO C 14 13.164 57.114 18.489 1.00 25.04 C \ ATOM 1246 CG PRO C 14 11.954 56.254 18.599 1.00 28.28 C \ ATOM 1247 CD PRO C 14 12.234 55.129 17.601 1.00 27.56 C \ ATOM 1248 N TRP C 15 15.559 56.443 20.457 1.00 25.62 N \ ATOM 1249 CA TRP C 15 15.994 56.227 21.831 1.00 25.06 C \ ATOM 1250 C TRP C 15 15.448 57.434 22.571 1.00 26.86 C \ ATOM 1251 O TRP C 15 15.547 58.560 22.080 1.00 26.03 O \ ATOM 1252 CB TRP C 15 17.516 56.204 21.937 1.00 25.64 C \ ATOM 1253 CG TRP C 15 18.113 54.919 21.482 1.00 25.70 C \ ATOM 1254 CD1 TRP C 15 18.214 53.759 22.199 1.00 25.88 C \ ATOM 1255 CD2 TRP C 15 18.652 54.643 20.190 1.00 27.24 C \ ATOM 1256 NE1 TRP C 15 18.787 52.775 21.427 1.00 27.24 N \ ATOM 1257 CE2 TRP C 15 19.066 53.293 20.188 1.00 26.38 C \ ATOM 1258 CE3 TRP C 15 18.828 55.407 19.028 1.00 26.45 C \ ATOM 1259 CZ2 TRP C 15 19.645 52.686 19.068 1.00 28.05 C \ ATOM 1260 CZ3 TRP C 15 19.404 54.801 17.913 1.00 29.57 C \ ATOM 1261 CH2 TRP C 15 19.805 53.454 17.945 1.00 28.17 C \ ATOM 1262 N GLY C 16 14.863 57.194 23.736 1.00 27.30 N \ ATOM 1263 CA GLY C 16 14.288 58.277 24.515 1.00 28.48 C \ ATOM 1264 C GLY C 16 12.811 58.011 24.734 1.00 30.67 C \ ATOM 1265 O GLY C 16 12.413 56.861 24.916 1.00 32.39 O \ ATOM 1266 N ALA C 17 11.990 59.056 24.714 1.00 31.76 N \ ATOM 1267 CA ALA C 17 10.555 58.891 24.913 1.00 34.69 C \ ATOM 1268 C ALA C 17 9.919 58.104 23.773 1.00 36.92 C \ ATOM 1269 O ALA C 17 10.363 58.189 22.630 1.00 35.36 O \ ATOM 1270 CB ALA C 17 9.892 60.244 25.028 1.00 34.42 C \ ATOM 1271 N LYS C 18 8.874 57.339 24.074 1.00 41.89 N \ ATOM 1272 CA LYS C 18 8.211 56.558 23.032 1.00 45.90 C \ ATOM 1273 C LYS C 18 6.917 57.234 22.601 1.00 46.99 C \ ATOM 1274 O LYS C 18 6.835 57.730 21.454 1.00 49.00 O \ ATOM 1275 CB LYS C 18 7.924 55.143 23.541 1.00 48.46 C \ ATOM 1276 CG LYS C 18 9.141 54.228 23.531 1.00 51.11 C \ ATOM 1277 CD LYS C 18 8.722 52.784 23.684 1.00 54.28 C \ ATOM 1278 CE LYS C 18 9.922 51.868 23.590 1.00 56.01 C \ ATOM 1279 NZ LYS C 18 9.499 50.445 23.578 1.00 56.93 N \ """, "1ugx.interface.12") cmd.set('ignore_case', '0') cmd.set('retain_order', '1') cmd.set('cartoon_smooth_loops', 0) cmd.set('transparency', 0.6) cmd.set('surface_color', 'grey80') cmd.hide('everything', 'all') cmd.color('grey80', 'all') cmd.select('dom', 'c. B & i. 4-18 | c. A & i. 1-133') cmd.show('cartoon', 'dom') cmd.spectrum('count', 'rainbow', 'dom') cmd.create('partner', 'c. C & i. 4-18 | c. A & i. 1-133') cmd.show('cartoon', 'partner') cmd.select('inter_resi', 'c. C & i. 10 | c. C & i. 12 | c. C & i. 15') cmd.color('purple', 'inter_resi') cmd.orient('dom | inter_resi') cmd.select('ptn_inter_resi', 'byres (!(n. C+O+H+CA+N)&dom within 4 of inter)') cmd.set_bond('stick_radius', 0.1, 'ptn_inter_resi') cmd.color('atomic','!e. C & inter_resi & (!(n. C+O+H+CA|(n. N&!r. pro)))') cmd.color('grey70','e. C & inter_resi & (!(n. C+O+H+CA|(n. N&!r. pro)))') cmd.color('atomic', '!e. C & ptn_inter_resi & (!(n. C+O+H+CA|(n. N&!r. pro)))') cmd.color('grey70', 'e. C & ptn_inter_resi & (!(n. C+O+H+CA|(n. N&!r. pro)))') cmd.show('sticks', 'ptn_inter_resi & !(n;C,O,H|(n. N&!r. pro))') cmd.show('sticks', 'inter_resi & !(n;C,O,H|(n. N&!r. pro))') cmd.show('surface', 'partner') cmd.deselect()