cmd.read_pdbstr("""\ HEADER TOXIN 10-FEB-05 2BK1 \ TITLE THE PORE STRUCTURE OF PNEUMOLYSIN, OBTAINED BY FITTING THE ALPHA \ TITLE 2 CARBON TRACE OF PERFRINGOLYSIN O INTO A CRYO-EM MAP \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: PERFRINGOLYSIN O; \ COMPND 3 CHAIN: A; \ COMPND 4 FRAGMENT: RESIDUES 53-500; \ COMPND 5 SYNONYM: THETA-TOXIN, THIOL-ACTIVATED CYTOLYSIN; \ COMPND 6 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; \ SOURCE 3 ORGANISM_TAXID: 1502; \ SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 \ KEYWDS CYTOLYSIS, HEMOLYSIS, THIOL-ACTIVATED CYTOLYSIN, TOXIN, CRYOEM, \ KEYWDS 2 CYTOLYTIC PROTEIN \ EXPDTA ELECTRON MICROSCOPY \ MDLTYP CA ATOMS ONLY, CHAIN A \ AUTHOR S.J.TILLEY,E.V.ORLOVA,R.J.C.GILBERT,P.W.ANDREW,H.R.SAIBIL \ REVDAT 5 08-MAY-24 2BK1 1 REMARK \ REVDAT 4 19-APR-17 2BK1 1 REMARK \ REVDAT 3 16-JAN-13 2BK1 1 REMARK VERSN \ REVDAT 2 24-FEB-09 2BK1 1 VERSN \ REVDAT 1 04-MAY-05 2BK1 0 \ JRNL AUTH S.J.TILLEY,E.V.ORLOVA,R.J.C.GILBERT,P.W.ANDREW,H.R.SAIBIL \ JRNL TITL STRUCTURAL BASIS OF PORE FORMATION BY THE BACTERIAL TOXIN \ JRNL TITL 2 PNEUMOLYSIN \ JRNL REF CELL(CAMBRIDGE,MASS.) V. 121 247 2005 \ JRNL REFN ISSN 0092-8674 \ JRNL PMID 15851031 \ JRNL DOI 10.1016/J.CELL.2005.02.033 \ REMARK 1 \ REMARK 1 REFERENCE 1 \ REMARK 1 AUTH J.ROSSJOHN,S.C.FEIL,W.J.MCKINSTRY,R.K.TWETEN,M.W.PARKER \ REMARK 1 TITL STRUCTURE OF A CHOLESTEROL-BINDING, THIOL-ACTIVATED \ REMARK 1 TITL 2 CYTOLYSIN AND A MODEL OF ITS MEMBRANE FORM \ REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 89 685 1997 \ REMARK 1 REFN ISSN 0092-8674 \ REMARK 1 PMID 9182756 \ REMARK 1 DOI 10.1016/S0092-8674(00)80251-2 \ REMARK 2 \ REMARK 2 RESOLUTION. 29.00 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 SOFTWARE PACKAGES : NULL \ REMARK 3 RECONSTRUCTION SCHEMA : NULL \ REMARK 3 \ REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT \ REMARK 3 PDB ENTRY : 1PFO \ REMARK 3 REFINEMENT SPACE : NULL \ REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT \ REMARK 3 REFINEMENT TARGET : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL \ REMARK 3 \ REMARK 3 FITTING PROCEDURE : METHOD--THE CRYSTAL STRUCTURE OF \ REMARK 3 PERFRINOGLYSIN O (1PFO, ROSSJOHN ET AL., 1998, CELL 89, 685)WAS \ REMARK 3 PLACED INTO THE CRYO-EM DENSITY MAP (EMD-1107). THE ALPHA CARBON \ REMARK 3 TRACE OF PERFRINGOLYSIN 0 WAS MANUALLY POSITIONED INTO THE CRYO- \ REMARK 3 EM DENSITY CORRESPONDING TO THE POSITION OF ONE SUBUNIT. THE \ REMARK 3 BEST FIT WAS OBTAINED BY SEPARATING THE MONOMER INTO SIX RIGID \ REMARK 3 BODIES- DOMAIN 1(91-172, 231-272 354-373), DOMAIN 2 UPPER (53- \ REMARK 3 62, 83-90, 374-381), DOMAIN 2 LOWER (63-82, 382-390), DOMAIN 3 \ REMARK 3 (177-186, 221-230, 273-283, 316-353), DOMAIN 3 HAIRPINS (187- \ REMARK 3 220, 284-315), AND DOMAIN 4 (391-500). THE COMPLETE OLIGOMER (38- \ REMARK 3 MER) WAS GENERATED AND CHECKED FOR CLOSE CONTACTS BOTH BY EYE \ REMARK 3 AND USING THE CCP4 PROGRAM CONTACT.TO IMPROVE THE FIT SECTIONS \ REMARK 3 CORRESPONDING TO 3 SUBUNITS WERE EXTRACTED FROM THE 38-MER MAP \ REMARK 3 (EMD-1107) AND A 44-MER MAP AND ALIGNED. THE WEIGHTED AVERAGE \ REMARK 3 WAS CALCULATED AND THE IMPROVED MAP USED FOR THE FINAL MANUAL \ REMARK 3 FITTING. THE TWO SECTIONS ARE CONSISTENT TO A RESOLUTION OF 28 \ REMARK 3 ANGSTROMS (0.5 CORRELATION FSC) AND THE WEIGHTED AVERAGE MAP WAS \ REMARK 3 RECONSTRUCTED FROM 131 PARTICLES. \ REMARK 3 \ REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS \ REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : 3.500 \ REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 29.00 \ REMARK 3 NUMBER OF PARTICLES : 88 \ REMARK 3 CTF CORRECTION METHOD : NULL \ REMARK 3 \ REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL \ REMARK 3 \ REMARK 3 OTHER DETAILS: RESIDUES 134-142 ARE MISSING FROM THE SEQUENCE. \ REMARK 3 RESIDUES CORRESPONDING TO TO TM1 AND TM2 (187-220,284-315) WERE \ REMARK 3 MODELLED AS A POLY-ALANINE FLAT BETA HAIRPINS. THE OLIGOMER CAN \ REMARK 3 BE GENERATED BY APPLYING 38-FOLD ROTATIONAL SYMMETRY. \ REMARK 4 \ REMARK 4 2BK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE. \ REMARK 100 THE DEPOSITION ID IS D_1290022920. \ REMARK 245 \ REMARK 245 EXPERIMENTAL DETAILS \ REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE \ REMARK 245 SPECIMEN TYPE : VITREOUS ICE \ REMARK 245 \ REMARK 245 ELECTRON MICROSCOPE SAMPLE \ REMARK 245 SAMPLE TYPE : PARTICLE \ REMARK 245 PARTICLE TYPE : POINT \ REMARK 245 NAME OF SAMPLE : PNEUMOLYSIN \ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 0.05 \ REMARK 245 SAMPLE SUPPORT DETAILS : HOLEY CARBON \ REMARK 245 SAMPLE VITRIFICATION DETAILS : PLUNGED INTO ETHANE \ REMARK 245 SAMPLE BUFFER : 8 MM NA2HP04, 1.5MM KH2PO4, 2.5 \ REMARK 245 MM KCL, 0.25 MM NACL \ REMARK 245 PH : 6.95 \ REMARK 245 SAMPLE DETAILS : THE SAMPLE CONSISTS OF \ REMARK 245 PNEUMOLYSIN IN A MEMBRANE-INSERTED PORE STATE \ REMARK 245 \ REMARK 245 DATA ACQUISITION \ REMARK 245 DATE OF EXPERIMENT : NULL \ REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL \ REMARK 245 TEMPERATURE (KELVIN) : 100.00 \ REMARK 245 MICROSCOPE MODEL : FEI TECNAI F20 \ REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM \ REMARK 245 MINIMUM DEFOCUS (NM) : 1100.00 \ REMARK 245 MAXIMUM DEFOCUS (NM) : 3200.00 \ REMARK 245 MINIMUM TILT ANGLE (DEGREES) : 0.00 \ REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : 0.00 \ REMARK 245 NOMINAL CS : 2.00 \ REMARK 245 IMAGING MODE : BRIGHT FIELD \ REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 \ REMARK 245 ILLUMINATION MODE : FLOOD BEAM \ REMARK 245 NOMINAL MAGNIFICATION : 42000 \ REMARK 245 CALIBRATED MAGNIFICATION : NULL \ REMARK 245 SOURCE : FIELD EMISSION GUN \ REMARK 245 ACCELERATION VOLTAGE (KV) : 200 \ REMARK 245 IMAGING DETAILS : SAMPLES WERE MAINTAINED AT \ REMARK 245 LIQUID NITROGEN TEMPERATURES IN THE ELECTRON MICROSCOPE. \ REMARK 247 \ REMARK 247 ELECTRON MICROSCOPY \ REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON \ REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE \ REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES \ REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION \ REMARK 247 OF THE STRUCTURE FACTORS. \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR \ REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C38). \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 2 0.986361 -0.164595 0.000000 0.00000 \ REMARK 350 BIOMT2 2 0.164595 0.986361 0.000000 0.00000 \ REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 3 0.945817 -0.324699 0.000000 0.00000 \ REMARK 350 BIOMT2 3 0.324699 0.945817 0.000000 0.00000 \ REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 4 0.879474 -0.475947 0.000000 0.00000 \ REMARK 350 BIOMT2 4 0.475947 0.879474 0.000000 0.00000 \ REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 5 0.789141 -0.614213 0.000000 0.00000 \ REMARK 350 BIOMT2 5 0.614213 0.789141 0.000000 0.00000 \ REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 6 0.677282 -0.735724 0.000000 0.00000 \ REMARK 350 BIOMT2 6 0.735724 0.677282 0.000000 0.00000 \ REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 7 0.546948 -0.837166 0.000000 0.00000 \ REMARK 350 BIOMT2 7 0.837166 0.546948 0.000000 0.00000 \ REMARK 350 BIOMT3 7 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 8 0.401695 -0.915773 0.000000 0.00000 \ REMARK 350 BIOMT2 8 0.915773 0.401695 0.000000 0.00000 \ REMARK 350 BIOMT3 8 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 9 0.245485 -0.969400 0.000000 0.00000 \ REMARK 350 BIOMT2 9 0.969400 0.245485 0.000000 0.00000 \ REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 10 0.082579 -0.996584 0.000000 0.00000 \ REMARK 350 BIOMT2 10 0.996584 0.082579 0.000000 0.00000 \ REMARK 350 BIOMT3 10 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 11 -0.082579 -0.996584 0.000000 0.00000 \ REMARK 350 BIOMT2 11 0.996584 -0.082579 0.000000 0.00000 \ REMARK 350 BIOMT3 11 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 12 -0.245485 -0.969400 0.000000 0.00000 \ REMARK 350 BIOMT2 12 0.969400 -0.245485 0.000000 0.00000 \ REMARK 350 BIOMT3 12 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 13 -0.401695 -0.915773 0.000000 0.00000 \ REMARK 350 BIOMT2 13 0.915773 -0.401695 0.000000 0.00000 \ REMARK 350 BIOMT3 13 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 14 -0.546948 -0.837166 0.000000 0.00000 \ REMARK 350 BIOMT2 14 0.837166 -0.546948 0.000000 0.00000 \ REMARK 350 BIOMT3 14 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 15 -0.677282 -0.735724 0.000000 0.00000 \ REMARK 350 BIOMT2 15 0.735724 -0.677282 0.000000 0.00000 \ REMARK 350 BIOMT3 15 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 16 -0.789141 -0.614213 0.000000 0.00000 \ REMARK 350 BIOMT2 16 0.614213 -0.789141 0.000000 0.00000 \ REMARK 350 BIOMT3 16 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 17 -0.879474 -0.475947 0.000000 0.00000 \ REMARK 350 BIOMT2 17 0.475947 -0.879474 0.000000 0.00000 \ REMARK 350 BIOMT3 17 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 18 -0.945817 -0.324699 0.000000 0.00000 \ REMARK 350 BIOMT2 18 0.324699 -0.945817 0.000000 0.00000 \ REMARK 350 BIOMT3 18 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 19 -0.986361 -0.164595 0.000000 0.00000 \ REMARK 350 BIOMT2 19 0.164595 -0.986361 0.000000 0.00000 \ REMARK 350 BIOMT3 19 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 20 -1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 20 0.000000 -1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 20 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 21 -0.986361 0.164595 0.000000 0.00000 \ REMARK 350 BIOMT2 21 -0.164595 -0.986361 0.000000 0.00000 \ REMARK 350 BIOMT3 21 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 22 -0.945817 0.324699 0.000000 0.00000 \ REMARK 350 BIOMT2 22 -0.324699 -0.945817 0.000000 0.00000 \ REMARK 350 BIOMT3 22 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 23 -0.879474 0.475947 0.000000 0.00000 \ REMARK 350 BIOMT2 23 -0.475947 -0.879474 0.000000 0.00000 \ REMARK 350 BIOMT3 23 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 24 -0.789141 0.614213 0.000000 0.00000 \ REMARK 350 BIOMT2 24 -0.614213 -0.789141 0.000000 0.00000 \ REMARK 350 BIOMT3 24 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 25 -0.677282 0.735724 0.000000 0.00000 \ REMARK 350 BIOMT2 25 -0.735724 -0.677282 0.000000 0.00000 \ REMARK 350 BIOMT3 25 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 26 -0.546948 0.837166 0.000000 0.00000 \ REMARK 350 BIOMT2 26 -0.837166 -0.546948 0.000000 0.00000 \ REMARK 350 BIOMT3 26 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 27 -0.401695 0.915773 0.000000 0.00000 \ REMARK 350 BIOMT2 27 -0.915773 -0.401695 0.000000 0.00000 \ REMARK 350 BIOMT3 27 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 28 -0.245485 0.969400 0.000000 0.00000 \ REMARK 350 BIOMT2 28 -0.969400 -0.245485 0.000000 0.00000 \ REMARK 350 BIOMT3 28 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 29 -0.082579 0.996584 0.000000 0.00000 \ REMARK 350 BIOMT2 29 -0.996584 -0.082579 0.000000 0.00000 \ REMARK 350 BIOMT3 29 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 30 0.082579 0.996584 0.000000 0.00000 \ REMARK 350 BIOMT2 30 -0.996584 0.082579 0.000000 0.00000 \ REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 31 0.245485 0.969400 0.000000 0.00000 \ REMARK 350 BIOMT2 31 -0.969400 0.245485 0.000000 0.00000 \ REMARK 350 BIOMT3 31 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 32 0.401695 0.915773 0.000000 0.00000 \ REMARK 350 BIOMT2 32 -0.915773 0.401695 0.000000 0.00000 \ REMARK 350 BIOMT3 32 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 33 0.546948 0.837166 0.000000 0.00000 \ REMARK 350 BIOMT2 33 -0.837166 0.546948 0.000000 0.00000 \ REMARK 350 BIOMT3 33 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 34 0.677282 0.735724 0.000000 0.00000 \ REMARK 350 BIOMT2 34 -0.735724 0.677282 0.000000 0.00000 \ REMARK 350 BIOMT3 34 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 35 0.789141 0.614213 0.000000 0.00000 \ REMARK 350 BIOMT2 35 -0.614213 0.789141 0.000000 0.00000 \ REMARK 350 BIOMT3 35 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 36 0.879474 0.475947 0.000000 0.00000 \ REMARK 350 BIOMT2 36 -0.475947 0.879474 0.000000 0.00000 \ REMARK 350 BIOMT3 36 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 37 0.945817 0.324699 0.000000 0.00000 \ REMARK 350 BIOMT2 37 -0.324699 0.945817 0.000000 0.00000 \ REMARK 350 BIOMT3 37 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 38 0.986361 0.164595 0.000000 0.00000 \ REMARK 350 BIOMT2 38 -0.164595 0.986361 0.000000 0.00000 \ REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 HIS A 173 \ REMARK 465 THR A 174 \ REMARK 465 LEU A 175 \ REMARK 465 PRO A 176 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 CA ALA A 54 CA ASP A 111 0.96 \ REMARK 500 CA LEU A 53 CA PHE A 114 1.52 \ REMARK 500 CA SER A 55 CA LYS A 112 1.67 \ REMARK 500 CA PHE A 351 CA PRO A 356 1.84 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 1M3I RELATED DB: PDB \ REMARK 900 PERFRINGOLYSIN O, NEW CRYSTAL FORM \ REMARK 900 RELATED ID: 1M3J RELATED DB: PDB \ REMARK 900 CRYSTAL FORM II OF PERFRINGOLYSIN O \ REMARK 900 RELATED ID: 1PFO RELATED DB: PDB \ REMARK 900 PERFRINGOLYSIN O \ REMARK 900 RELATED ID: 2BK2 RELATED DB: PDB \ REMARK 900 THE PORE STRUCTURE OF PNEUMOLYSIN, OBTAINED BY FITTING THE ALPHA \ REMARK 900 CARBON TRACE OF PERFRINGOLYSIN O INTO A CRYO-EM MAP \ REMARK 900 RELATED ID: EMD-1107 RELATED DB: EMDB \ REMARK 900 THE PORE STRUCTURE OF PNEUMOLYSIN VOLUME DATA \ REMARK 900 RELATED ID: EMD-1108 RELATED DB: EMDB \ REMARK 900 THE PORE STRUCTURE OF PNEUMOLYSIN VOLUME DATA \ DBREF 2BK1 A 53 500 UNP P19995 TACY_CLOPE 53 500 \ SEQRES 1 A 448 LEU ALA SER ASN GLY ASP LYS ILE GLU SER PHE VAL PRO \ SEQRES 2 A 448 LYS GLU GLY LYS LYS THR GLY ASN LYS PHE ILE VAL VAL \ SEQRES 3 A 448 GLU ARG GLN LYS ARG SER LEU THR THR SER PRO VAL ASP \ SEQRES 4 A 448 ILE SER ILE ILE ASP SER VAL ASN ASP ARG THR TYR PRO \ SEQRES 5 A 448 GLY ALA LEU GLN LEU ALA ASP LYS ALA PHE VAL GLU ASN \ SEQRES 6 A 448 ARG PRO THR ILE LEU MET VAL LYS ARG LYS PRO ILE ASN \ SEQRES 7 A 448 ILE ASN ILE ASP LEU PRO GLY LEU LYS GLY GLU ASN SER \ SEQRES 8 A 448 ILE LYS VAL ASP ASP PRO THR TYR GLY LYS VAL SER GLY \ SEQRES 9 A 448 ALA ILE ASP GLU LEU VAL SER LYS TRP ASN GLU LYS TYR \ SEQRES 10 A 448 SER SER THR HIS THR LEU PRO ALA ARG THR GLN TYR SER \ SEQRES 11 A 448 GLU SER MET VAL TYR SER LYS SER GLN ILE SER SER ALA \ SEQRES 12 A 448 LEU ASN VAL ASN ALA LYS VAL LEU GLU ASN SER LEU GLY \ SEQRES 13 A 448 VAL ASP PHE ASN ALA VAL ALA ASN ASN GLU LYS LYS VAL \ SEQRES 14 A 448 MET ILE LEU ALA TYR LYS GLN ILE PHE TYR THR VAL SER \ SEQRES 15 A 448 ALA ASP LEU PRO LYS ASN PRO SER ASP LEU PHE ASP ASP \ SEQRES 16 A 448 SER VAL THR PHE ASN ASP LEU LYS GLN LYS GLY VAL SER \ SEQRES 17 A 448 ASN GLU ALA PRO PRO LEU MET VAL SER ASN VAL ALA TYR \ SEQRES 18 A 448 GLY ARG THR ILE TYR VAL LYS LEU GLU THR THR SER SER \ SEQRES 19 A 448 SER LYS ASP VAL GLN ALA ALA PHE LYS ALA LEU ILE LYS \ SEQRES 20 A 448 ASN THR ASP ILE LYS ASN SER GLN GLN TYR LYS ASP ILE \ SEQRES 21 A 448 TYR GLU ASN SER SER PHE THR ALA VAL VAL LEU GLY GLY \ SEQRES 22 A 448 ASP ALA GLN GLU HIS ASN LYS VAL VAL THR LYS ASP PHE \ SEQRES 23 A 448 ASP GLU ILE ARG LYS VAL ILE LYS ASP ASN ALA THR PHE \ SEQRES 24 A 448 SER THR LYS ASN PRO ALA TYR PRO ILE SER TYR THR SER \ SEQRES 25 A 448 VAL PHE LEU LYS ASP ASN SER VAL ALA ALA VAL HIS ASN \ SEQRES 26 A 448 LYS THR ASP TYR ILE GLU THR THR SER THR GLU TYR SER \ SEQRES 27 A 448 LYS GLY LYS ILE ASN LEU ASP HIS SER GLY ALA TYR VAL \ SEQRES 28 A 448 ALA GLN PHE GLU VAL ALA TRP ASP GLU VAL SER TYR ASP \ SEQRES 29 A 448 LYS GLU GLY ASN GLU VAL LEU THR HIS LYS THR TRP ASP \ SEQRES 30 A 448 GLY ASN TYR GLN ASP LYS THR ALA HIS TYR SER THR VAL \ SEQRES 31 A 448 ILE PRO LEU GLU ALA ASN ALA ARG ASN ILE ARG ILE LYS \ SEQRES 32 A 448 ALA ARG GLU CYS THR GLY LEU ALA TRP GLU TRP TRP ARG \ SEQRES 33 A 448 ASP VAL ILE SER GLU TYR ASP VAL PRO LEU THR ASN ASN \ SEQRES 34 A 448 ILE ASN VAL SER ILE TRP GLY THR THR LEU TYR PRO GLY \ SEQRES 35 A 448 SER SER ILE THR TYR ASN \ CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 1.000000 0.000000 0.000000 0.00000 \ SCALE2 0.000000 1.000000 0.000000 0.00000 \ SCALE3 0.000000 0.000000 1.000000 0.00000 \ ATOM 1 CA LEU A 53 47.401 147.826 40.026 1.00 52.64 C \ ATOM 2 CA ALA A 54 48.404 151.159 38.519 1.00 62.98 C \ ATOM 3 CA SER A 55 50.504 151.605 35.388 1.00 69.35 C \ ATOM 4 CA ASN A 56 51.928 154.873 34.081 1.00 79.20 C \ ATOM 5 CA GLY A 57 52.447 154.742 30.325 1.00 76.74 C \ ATOM 6 CA ASP A 58 55.112 156.697 28.443 1.00 81.15 C \ ATOM 7 CA LYS A 59 55.758 159.911 30.347 1.00 87.90 C \ ATOM 8 CA ILE A 60 57.586 161.882 27.710 1.00 90.56 C \ ATOM 9 CA GLU A 61 58.912 165.332 26.601 1.00 93.40 C \ ATOM 10 CA SER A 62 60.426 166.366 23.163 1.00 88.16 C \ ATOM 11 CA PHE A 63 53.828 166.397 25.206 1.00 75.10 C \ ATOM 12 CA VAL A 64 52.989 163.327 23.044 1.00 59.75 C \ ATOM 13 CA PRO A 65 50.735 163.950 20.023 1.00 49.78 C \ ATOM 14 CA LYS A 66 48.715 160.705 20.257 1.00 46.69 C \ ATOM 15 CA GLU A 67 48.312 158.103 23.008 1.00 47.93 C \ ATOM 16 CA GLY A 68 46.516 154.821 23.668 1.00 52.05 C \ ATOM 17 CA LYS A 69 45.444 154.010 27.209 1.00 51.06 C \ ATOM 18 CA LYS A 70 43.548 151.040 28.654 1.00 47.84 C \ ATOM 19 CA THR A 71 41.348 151.614 31.690 1.00 43.64 C \ ATOM 20 CA GLY A 72 39.007 148.882 32.842 1.00 50.62 C \ ATOM 21 CA ASN A 73 37.076 147.498 29.891 1.00 52.04 C \ ATOM 22 CA LYS A 74 37.978 150.507 27.721 1.00 44.65 C \ ATOM 23 CA PHE A 75 40.654 151.906 25.391 1.00 39.44 C \ ATOM 24 CA ILE A 76 41.115 155.684 25.356 1.00 35.78 C \ ATOM 25 CA VAL A 77 42.837 157.432 22.462 1.00 37.89 C \ ATOM 26 CA VAL A 78 43.979 160.945 23.296 1.00 37.46 C \ ATOM 27 CA GLU A 79 45.204 163.522 20.787 1.00 44.38 C \ ATOM 28 CA ARG A 80 47.055 166.705 21.711 1.00 47.98 C \ ATOM 29 CA GLN A 81 47.394 170.051 19.950 1.00 52.55 C \ ATOM 30 CA LYS A 82 49.038 173.148 21.381 1.00 43.70 C \ ATOM 31 CA ARG A 83 47.948 166.236 26.522 1.00 38.38 C \ ATOM 32 CA SER A 84 47.502 164.051 29.616 1.00 39.66 C \ ATOM 33 CA LEU A 85 45.023 161.237 30.219 1.00 44.16 C \ ATOM 34 CA THR A 86 44.101 159.657 33.581 1.00 43.90 C \ ATOM 35 CA THR A 87 41.949 156.547 33.995 1.00 49.17 C \ ATOM 36 CA SER A 88 40.740 154.235 36.739 1.00 46.31 C \ ATOM 37 CA PRO A 89 38.634 151.595 35.077 1.00 43.96 C \ ATOM 38 CA VAL A 90 37.005 149.022 37.351 1.00 38.54 C \ ATOM 39 CA ASP A 91 35.134 143.242 38.077 1.00 38.60 C \ ATOM 40 CA ILE A 92 38.852 142.567 37.790 1.00 36.14 C \ ATOM 41 CA SER A 93 40.137 139.170 36.714 1.00 38.16 C \ ATOM 42 CA ILE A 94 42.637 137.422 38.981 1.00 35.84 C \ ATOM 43 CA ILE A 95 45.584 135.551 37.451 1.00 50.82 C \ ATOM 44 CA ASP A 96 47.133 133.152 39.988 1.00 69.54 C \ ATOM 45 CA SER A 97 44.042 131.830 41.789 1.00 76.11 C \ ATOM 46 CA VAL A 98 45.933 129.950 44.535 1.00 81.34 C \ ATOM 47 CA ASN A 99 48.834 132.356 45.039 1.00 80.15 C \ ATOM 48 CA ASP A 100 46.858 135.519 44.588 1.00 77.45 C \ ATOM 49 CA ARG A 101 46.428 136.640 48.141 1.00 62.40 C \ ATOM 50 CA THR A 102 43.609 139.028 47.293 1.00 49.64 C \ ATOM 51 CA TYR A 103 41.059 139.274 50.063 1.00 41.23 C \ ATOM 52 CA PRO A 104 38.063 141.484 50.756 1.00 37.84 C \ ATOM 53 CA GLY A 105 39.330 144.423 52.771 1.00 40.32 C \ ATOM 54 CA ALA A 106 42.861 144.635 51.354 1.00 40.05 C \ ATOM 55 CA LEU A 107 44.738 147.819 50.337 1.00 39.57 C \ ATOM 56 CA GLN A 108 46.141 148.257 46.839 1.00 41.20 C \ ATOM 57 CA LEU A 109 47.637 151.020 44.741 1.00 44.76 C \ ATOM 58 CA ALA A 110 45.866 152.106 41.572 1.00 43.61 C \ ATOM 59 CA ASP A 111 48.426 152.086 38.763 1.00 49.98 C \ ATOM 60 CA LYS A 112 49.746 150.164 35.744 1.00 50.85 C \ ATOM 61 CA ALA A 113 50.686 147.216 37.966 1.00 45.29 C \ ATOM 62 CA PHE A 114 47.064 146.735 39.017 1.00 41.47 C \ ATOM 63 CA VAL A 115 46.104 146.938 35.351 1.00 45.52 C \ ATOM 64 CA GLU A 116 48.682 144.234 34.534 1.00 46.70 C \ ATOM 65 CA ASN A 117 46.892 141.877 36.971 1.00 46.92 C \ ATOM 66 CA ARG A 118 49.659 142.041 39.581 1.00 45.52 C \ ATOM 67 CA PRO A 119 48.656 144.900 41.951 1.00 45.34 C \ ATOM 68 CA THR A 120 50.867 146.286 44.716 1.00 46.64 C \ ATOM 69 CA ILE A 121 49.569 145.404 48.173 1.00 53.51 C \ ATOM 70 CA LEU A 122 50.014 147.661 51.214 1.00 54.17 C \ ATOM 71 CA MET A 123 50.381 146.222 54.706 1.00 59.98 C \ ATOM 72 CA VAL A 124 50.048 148.203 57.932 1.00 61.75 C \ ATOM 73 CA LYS A 125 48.377 147.745 61.327 1.00 67.63 C \ ATOM 74 CA ARG A 126 44.623 147.837 60.710 1.00 68.78 C \ ATOM 75 CA LYS A 127 41.348 148.498 62.504 1.00 65.63 C \ ATOM 76 CA PRO A 128 38.697 145.743 62.320 1.00 53.87 C \ ATOM 77 CA ILE A 129 36.562 145.307 59.209 1.00 47.59 C \ ATOM 78 CA ASN A 130 33.168 143.747 58.531 1.00 49.89 C \ ATOM 79 CA ILE A 131 32.743 141.135 55.802 1.00 43.93 C \ ATOM 80 CA ASN A 132 29.587 139.794 54.135 1.00 36.94 C \ ATOM 81 CA ILE A 133 29.106 136.733 51.934 1.00 36.45 C \ ATOM 82 CA ASP A 134 26.321 136.528 49.329 1.00 39.39 C \ ATOM 83 CA LEU A 135 25.408 132.848 49.721 1.00 38.45 C \ ATOM 84 CA PRO A 136 21.640 132.338 49.535 1.00 40.63 C \ ATOM 85 CA GLY A 137 19.583 131.674 52.662 1.00 47.62 C \ ATOM 86 CA LEU A 138 21.884 133.307 55.194 1.00 48.68 C \ ATOM 87 CA LYS A 139 20.176 136.709 55.183 1.00 57.86 C \ ATOM 88 CA GLY A 140 20.703 138.351 58.568 1.00 55.84 C \ ATOM 89 CA GLU A 141 23.572 136.055 59.622 1.00 56.03 C \ ATOM 90 CA ASN A 142 26.114 136.430 56.790 1.00 45.96 C \ ATOM 91 CA SER A 143 28.329 139.018 58.471 1.00 45.53 C \ ATOM 92 CA ILE A 144 31.368 138.823 60.712 1.00 48.80 C \ ATOM 93 CA LYS A 145 33.816 141.340 62.145 1.00 58.56 C \ ATOM 94 CA VAL A 146 37.495 140.657 61.465 1.00 61.85 C \ ATOM 95 CA ASP A 147 39.629 142.331 64.114 1.00 68.16 C \ ATOM 96 CA ASP A 148 42.991 141.807 62.425 1.00 67.91 C \ ATOM 97 CA PRO A 149 42.392 142.045 58.647 1.00 60.33 C \ ATOM 98 CA THR A 150 45.146 139.928 57.102 1.00 58.51 C \ ATOM 99 CA TYR A 151 44.920 137.545 54.131 1.00 55.30 C \ ATOM 100 CA GLY A 152 45.039 134.598 56.519 1.00 52.75 C \ ATOM 101 CA LYS A 153 42.755 136.140 59.121 1.00 49.36 C \ ATOM 102 CA VAL A 154 40.084 137.216 56.626 1.00 41.82 C \ ATOM 103 CA SER A 155 40.322 133.817 54.899 1.00 44.17 C \ ATOM 104 CA GLY A 156 39.439 132.235 58.214 1.00 47.19 C \ ATOM 105 CA ALA A 157 36.539 134.594 58.766 1.00 44.84 C \ ATOM 106 CA ILE A 158 35.306 133.727 55.276 1.00 40.59 C \ ATOM 107 CA ASP A 159 35.671 130.051 56.252 1.00 44.05 C \ ATOM 108 CA GLU A 160 33.678 130.781 59.407 1.00 45.80 C \ ATOM 109 CA LEU A 161 30.894 132.302 57.338 1.00 38.69 C \ ATOM 110 CA VAL A 162 30.842 129.301 54.996 1.00 41.65 C \ ATOM 111 CA SER A 163 30.763 126.933 57.983 1.00 51.51 C \ ATOM 112 CA LYS A 164 27.723 128.833 59.247 1.00 50.15 C \ ATOM 113 CA TRP A 165 25.959 128.221 55.935 1.00 41.64 C \ ATOM 114 CA ASN A 166 26.936 124.539 56.095 1.00 48.04 C \ ATOM 115 CA GLU A 167 25.680 124.236 59.667 1.00 53.67 C \ ATOM 116 CA LYS A 168 22.325 125.669 58.587 1.00 49.36 C \ ATOM 117 CA TYR A 169 22.064 123.521 55.452 1.00 49.66 C \ ATOM 118 CA SER A 170 23.785 120.334 56.688 1.00 46.14 C \ ATOM 119 CA SER A 171 22.483 117.987 53.981 1.00 40.03 C \ ATOM 120 CA THR A 172 23.347 120.218 50.995 1.00 39.59 C \ ATOM 121 CA ALA A 177 31.537 125.225 46.563 1.00 32.67 C \ ATOM 122 CA ARG A 178 28.511 126.805 44.908 1.00 29.47 C \ ATOM 123 CA THR A 179 28.672 125.078 41.542 1.00 26.97 C \ ATOM 124 CA GLN A 180 27.136 126.693 38.471 1.00 30.03 C \ ATOM 125 CA TYR A 181 26.918 124.435 35.429 1.00 28.02 C \ ATOM 126 CA SER A 182 26.875 125.633 31.822 1.00 27.61 C \ ATOM 127 CA GLU A 183 26.754 123.424 28.743 1.00 27.16 C \ ATOM 128 CA SER A 184 26.703 124.131 25.020 1.00 26.32 C \ ATOM 129 CA MET A 185 27.720 122.922 21.569 1.00 29.05 C \ ATOM 130 CA VAL A 186 30.295 124.987 19.687 1.00 31.70 C \ ATOM 131 CA TYR A 187 27.565 118.934 18.868 1.00 99.99 C \ ATOM 132 CA SER A 188 28.113 120.785 15.590 1.00 99.99 C \ ATOM 133 CA LYS A 189 27.440 119.096 12.313 1.00 20.00 C \ ATOM 134 CA SER A 190 28.148 120.968 9.074 1.00 20.00 C \ ATOM 135 CA GLN A 191 27.613 119.275 5.708 1.00 20.00 C \ ATOM 136 CA ILE A 192 28.257 121.168 2.470 1.00 20.00 C \ ATOM 137 CA SER A 193 27.784 119.454 -0.896 1.00 20.00 C \ ATOM 138 CA SER A 194 28.367 121.367 -4.136 1.00 20.00 C \ ATOM 139 CA ALA A 195 27.959 119.634 -7.501 1.00 20.00 C \ ATOM 140 CA LEU A 196 28.479 121.565 -10.743 1.00 20.00 C \ ATOM 141 CA ASN A 197 28.134 119.819 -14.108 1.00 20.00 C \ ATOM 142 CA VAL A 198 28.590 121.763 -17.350 1.00 20.00 C \ ATOM 143 CA ASN A 199 28.309 120.000 -20.711 1.00 20.00 C \ ATOM 144 CA ALA A 200 28.699 121.956 -23.955 1.00 20.00 C \ ATOM 145 CA LYS A 201 28.483 120.187 -27.314 1.00 20.00 C \ ATOM 146 CA VAL A 202 28.809 122.151 -30.561 1.00 20.00 C \ ATOM 147 CA LEU A 203 30.963 119.894 -32.742 1.00 99.99 C \ ATOM 148 CA GLU A 204 32.282 118.386 -33.125 1.00 99.99 C \ ATOM 149 CA ASN A 205 33.482 120.787 -30.508 1.00 20.00 C \ ATOM 150 CA SER A 206 33.006 118.850 -27.267 1.00 20.00 C \ ATOM 151 CA LEU A 207 33.397 120.583 -23.902 1.00 20.00 C \ ATOM 152 CA GLY A 208 32.857 118.660 -20.663 1.00 20.00 C \ ATOM 153 CA VAL A 209 33.311 120.378 -17.297 1.00 20.00 C \ ATOM 154 CA ASP A 210 32.707 118.471 -14.057 1.00 20.00 C \ ATOM 155 CA PHE A 211 33.224 120.171 -10.691 1.00 20.00 C \ ATOM 156 CA ASN A 212 32.558 118.285 -7.450 1.00 20.00 C \ ATOM 157 CA ALA A 213 33.140 119.963 -4.085 1.00 20.00 C \ ATOM 158 CA VAL A 214 32.410 118.100 -0.847 1.00 20.00 C \ ATOM 159 CA ALA A 215 33.052 119.753 2.521 1.00 20.00 C \ ATOM 160 CA ASN A 216 32.261 117.915 5.759 1.00 20.00 C \ ATOM 161 CA ASN A 217 32.963 119.543 9.127 1.00 20.00 C \ ATOM 162 CA GLU A 218 32.113 117.733 12.365 1.00 20.00 C \ ATOM 163 CA LYS A 219 32.832 118.932 15.906 1.00 99.99 C \ ATOM 164 CA LYS A 220 33.104 116.447 18.773 1.00 99.99 C \ ATOM 165 CA VAL A 221 32.538 120.044 20.024 1.00 31.57 C \ ATOM 166 CA MET A 222 30.642 120.453 23.272 1.00 30.76 C \ ATOM 167 CA ILE A 223 31.918 122.583 26.130 1.00 28.28 C \ ATOM 168 CA LEU A 224 30.982 122.364 29.824 1.00 24.49 C \ ATOM 169 CA ALA A 225 31.791 124.897 32.515 1.00 22.80 C \ ATOM 170 CA TYR A 226 31.662 124.165 36.233 1.00 22.66 C \ ATOM 171 CA LYS A 227 31.967 127.505 38.007 1.00 25.77 C \ ATOM 172 CA GLN A 228 32.922 126.967 41.656 1.00 27.11 C \ ATOM 173 CA ILE A 229 32.075 129.997 43.795 1.00 29.56 C \ ATOM 174 CA PHE A 230 33.471 129.954 47.338 1.00 32.83 C \ ATOM 175 CA TYR A 231 29.845 133.145 46.036 1.00 31.19 C \ ATOM 176 CA THR A 232 31.411 136.571 46.630 1.00 32.62 C \ ATOM 177 CA VAL A 233 32.541 138.289 49.847 1.00 34.56 C \ ATOM 178 CA SER A 234 32.436 142.052 50.343 1.00 39.45 C \ ATOM 179 CA ALA A 235 33.932 144.415 52.907 1.00 41.06 C \ ATOM 180 CA ASP A 236 31.943 147.286 54.419 1.00 45.72 C \ ATOM 181 CA LEU A 237 33.247 150.571 53.069 1.00 51.46 C \ ATOM 182 CA PRO A 238 34.710 152.865 55.806 1.00 57.09 C \ ATOM 183 CA LYS A 239 33.380 156.431 56.047 1.00 64.04 C \ ATOM 184 CA ASN A 240 36.895 157.689 56.536 1.00 64.78 C \ ATOM 185 CA PRO A 241 40.258 156.367 55.267 1.00 61.87 C \ ATOM 186 CA SER A 242 41.469 156.612 58.894 1.00 61.60 C \ ATOM 187 CA ASP A 243 38.901 154.098 60.208 1.00 60.58 C \ ATOM 188 CA LEU A 244 40.766 151.420 58.222 1.00 56.94 C \ ATOM 189 CA PHE A 245 44.191 152.306 59.593 1.00 64.91 C \ ATOM 190 CA ASP A 246 45.403 151.683 63.097 1.00 71.39 C \ ATOM 191 CA ASP A 247 46.154 155.052 64.677 1.00 77.65 C \ ATOM 192 CA SER A 248 49.934 154.463 64.727 1.00 74.26 C \ ATOM 193 CA VAL A 249 50.046 154.573 60.929 1.00 72.03 C \ ATOM 194 CA THR A 250 50.883 157.993 59.496 1.00 71.67 C \ ATOM 195 CA PHE A 251 50.289 159.425 56.044 1.00 73.20 C \ ATOM 196 CA ASN A 252 54.072 159.240 55.744 1.00 76.14 C \ ATOM 197 CA ASP A 253 54.125 155.457 56.037 1.00 72.82 C \ ATOM 198 CA LEU A 254 51.580 155.355 53.197 1.00 63.60 C \ ATOM 199 CA LYS A 255 53.614 157.509 50.801 1.00 62.30 C \ ATOM 200 CA GLN A 256 56.665 155.501 51.774 1.00 67.75 C \ ATOM 201 CA LYS A 257 54.675 152.407 50.773 1.00 57.09 C \ ATOM 202 CA GLY A 258 53.919 153.941 47.382 1.00 48.72 C \ ATOM 203 CA VAL A 259 50.867 156.166 47.735 1.00 46.13 C \ ATOM 204 CA SER A 260 51.035 159.181 45.444 1.00 51.08 C \ ATOM 205 CA ASN A 261 48.987 161.088 42.854 1.00 56.48 C \ ATOM 206 CA GLU A 262 49.526 158.431 40.188 1.00 58.44 C \ ATOM 207 CA ALA A 263 49.267 155.630 42.744 1.00 40.61 C \ ATOM 208 CA PRO A 264 46.013 156.463 44.631 1.00 37.98 C \ ATOM 209 CA PRO A 265 45.075 154.211 47.594 1.00 42.57 C \ ATOM 210 CA LEU A 266 42.338 151.574 47.245 1.00 40.43 C \ ATOM 211 CA MET A 267 40.493 148.930 49.219 1.00 37.86 C \ ATOM 212 CA VAL A 268 39.273 145.618 47.846 1.00 37.58 C \ ATOM 213 CA SER A 269 35.494 145.742 48.381 1.00 38.53 C \ ATOM 214 CA ASN A 270 34.481 142.557 46.543 1.00 37.35 C \ ATOM 215 CA VAL A 271 36.037 139.188 45.765 1.00 29.33 C \ ATOM 216 CA ALA A 272 34.414 136.474 43.634 1.00 27.48 C \ ATOM 217 CA TYR A 273 36.081 134.058 44.348 1.00 30.82 C \ ATOM 218 CA GLY A 274 36.894 130.440 43.490 1.00 31.68 C \ ATOM 219 CA ARG A 275 37.855 128.558 40.330 1.00 32.44 C \ ATOM 220 CA THR A 276 36.360 127.094 37.150 1.00 28.56 C \ ATOM 221 CA ILE A 277 36.554 123.667 35.503 1.00 28.00 C \ ATOM 222 CA TYR A 278 36.224 123.711 31.737 1.00 24.23 C \ ATOM 223 CA VAL A 279 35.595 120.503 29.796 1.00 24.35 C \ ATOM 224 CA LYS A 280 35.671 119.826 26.061 1.00 25.99 C \ ATOM 225 CA LEU A 281 34.028 116.761 24.459 1.00 25.92 C \ ATOM 226 CA GLU A 282 35.173 116.358 20.853 1.00 32.89 C \ ATOM 227 CA THR A 283 34.515 113.895 18.032 1.00 27.18 C \ ATOM 228 CA THR A 284 37.027 117.537 15.671 1.00 99.99 C \ ATOM 229 CA SER A 285 35.982 116.649 12.124 1.00 99.99 C \ ATOM 230 CA SER A 286 37.746 118.164 9.182 1.00 20.00 C \ ATOM 231 CA SER A 287 37.210 116.470 5.815 1.00 20.00 C \ ATOM 232 CA LYS A 288 37.855 118.362 2.576 1.00 20.00 C \ ATOM 233 CA ASP A 289 37.384 116.652 -0.791 1.00 20.00 C \ ATOM 234 CA VAL A 290 37.967 118.562 -4.029 1.00 20.00 C \ ATOM 235 CA GLN A 291 37.559 116.832 -7.394 1.00 20.00 C \ ATOM 236 CA ALA A 292 38.078 118.761 -10.636 1.00 20.00 C \ ATOM 237 CA ALA A 293 37.731 117.016 -14.000 1.00 20.00 C \ ATOM 238 CA PHE A 294 38.189 118.957 -17.241 1.00 20.00 C \ ATOM 239 CA LYS A 295 37.907 117.198 -20.603 1.00 20.00 C \ ATOM 240 CA ALA A 296 38.297 119.153 -23.847 1.00 20.00 C \ ATOM 241 CA LEU A 297 38.083 117.383 -27.210 1.00 20.00 C \ ATOM 242 CA ILE A 298 38.407 119.348 -30.453 1.00 20.00 C \ ATOM 243 CA LYS A 299 40.562 117.093 -32.638 1.00 99.99 C \ ATOM 244 CA ASN A 300 41.883 115.578 -33.017 1.00 99.99 C \ ATOM 245 CA THR A 301 43.081 117.985 -30.400 1.00 20.00 C \ ATOM 246 CA ASP A 302 42.604 116.045 -27.160 1.00 20.00 C \ ATOM 247 CA ILE A 303 42.996 117.780 -23.794 1.00 20.00 C \ ATOM 248 CA LYS A 304 42.455 115.858 -20.554 1.00 20.00 C \ ATOM 249 CA ASN A 305 42.911 117.576 -17.189 1.00 20.00 C \ ATOM 250 CA SER A 306 42.305 115.670 -13.950 1.00 20.00 C \ ATOM 251 CA GLN A 307 42.823 117.369 -10.585 1.00 20.00 C \ ATOM 252 CA GLN A 308 42.157 115.482 -7.345 1.00 20.00 C \ ATOM 253 CA TYR A 309 42.736 117.160 -3.977 1.00 20.00 C \ ATOM 254 CA LYS A 310 42.009 115.296 -0.739 1.00 20.00 C \ ATOM 255 CA ASP A 311 42.649 116.950 2.628 1.00 20.00 C \ ATOM 256 CA ILE A 312 41.859 115.113 5.867 1.00 20.00 C \ ATOM 257 CA TYR A 313 42.563 116.741 9.233 1.00 20.00 C \ ATOM 258 CA GLU A 314 41.743 115.281 12.655 1.00 99.99 C \ ATOM 259 CA ASN A 315 41.431 117.543 15.694 1.00 99.99 C \ ATOM 260 CA SER A 316 35.823 111.163 20.860 1.00 33.10 C \ ATOM 261 CA SER A 317 38.356 112.723 23.177 1.00 31.24 C \ ATOM 262 CA PHE A 318 37.788 114.688 26.370 1.00 27.82 C \ ATOM 263 CA THR A 319 39.893 117.515 27.788 1.00 27.16 C \ ATOM 264 CA ALA A 320 39.665 119.102 31.255 1.00 27.06 C \ ATOM 265 CA VAL A 321 41.516 122.153 32.575 1.00 29.40 C \ ATOM 266 CA VAL A 322 41.129 123.919 35.910 1.00 29.76 C \ ATOM 267 CA LEU A 323 41.554 127.699 35.875 1.00 39.58 C \ ATOM 268 CA GLY A 324 41.577 130.104 38.776 1.00 56.31 C \ ATOM 269 CA GLY A 325 42.616 129.720 42.385 1.00 65.78 C \ ATOM 270 CA ASP A 326 44.779 126.944 43.804 1.00 71.84 C \ ATOM 271 CA ALA A 327 45.593 125.264 40.490 1.00 66.18 C \ ATOM 272 CA GLN A 328 49.078 125.004 39.011 1.00 50.67 C \ ATOM 273 CA GLU A 329 48.795 126.871 35.733 1.00 42.02 C \ ATOM 274 CA HIS A 330 48.387 124.920 32.490 1.00 35.02 C \ ATOM 275 CA ASN A 331 47.242 121.758 34.211 1.00 30.77 C \ ATOM 276 CA LYS A 332 45.373 119.500 31.821 1.00 29.18 C \ ATOM 277 CA VAL A 333 43.797 116.117 31.290 1.00 29.30 C \ ATOM 278 CA VAL A 334 43.226 114.518 27.870 1.00 28.88 C \ ATOM 279 CA THR A 335 41.472 111.118 27.797 1.00 33.78 C \ ATOM 280 CA LYS A 336 39.152 108.701 26.046 1.00 33.58 C \ ATOM 281 CA ASP A 337 37.802 107.505 29.394 1.00 32.44 C \ ATOM 282 CA PHE A 338 35.321 110.074 30.745 1.00 31.22 C \ ATOM 283 CA ASP A 339 35.732 108.693 34.263 1.00 34.90 C \ ATOM 284 CA GLU A 340 38.975 110.658 34.449 1.00 36.43 C \ ATOM 285 CA ILE A 341 37.039 113.821 33.639 1.00 33.09 C \ ATOM 286 CA ARG A 342 34.473 112.966 36.296 1.00 31.98 C \ ATOM 287 CA LYS A 343 37.342 112.834 38.785 1.00 32.22 C \ ATOM 288 CA VAL A 344 38.620 116.348 37.939 1.00 33.39 C \ ATOM 289 CA ILE A 345 35.076 117.761 38.304 1.00 32.22 C \ ATOM 290 CA LYS A 346 34.588 115.924 41.627 1.00 33.61 C \ ATOM 291 CA ASP A 347 38.009 116.837 43.073 1.00 32.80 C \ ATOM 292 CA ASN A 348 37.766 120.550 42.356 1.00 34.20 C \ ATOM 293 CA ALA A 349 34.428 121.388 43.960 1.00 34.20 C \ ATOM 294 CA THR A 350 35.695 121.847 47.547 1.00 33.42 C \ ATOM 295 CA PHE A 351 36.464 125.157 49.202 1.00 34.75 C \ ATOM 296 CA SER A 352 39.171 125.096 51.851 1.00 36.66 C \ ATOM 297 CA THR A 353 38.342 127.988 54.166 1.00 38.40 C \ ATOM 298 CA LYS A 354 32.907 121.670 52.065 1.00 43.40 C \ ATOM 299 CA ASN A 355 35.992 122.217 49.873 1.00 41.32 C \ ATOM 300 CA PRO A 356 38.179 125.355 49.828 1.00 41.41 C \ ATOM 301 CA ALA A 357 37.498 128.077 47.237 1.00 34.76 C \ ATOM 302 CA TYR A 358 39.881 130.638 45.731 1.00 38.32 C \ ATOM 303 CA PRO A 359 39.532 134.210 44.420 1.00 37.20 C \ ATOM 304 CA ILE A 360 38.720 134.424 40.726 1.00 32.53 C \ ATOM 305 CA SER A 361 38.146 138.183 40.401 1.00 27.27 C \ ATOM 306 CA TYR A 362 37.489 141.271 42.523 1.00 32.15 C \ ATOM 307 CA THR A 363 36.440 144.929 42.579 1.00 42.51 C \ ATOM 308 CA SER A 364 38.066 147.898 44.300 1.00 40.98 C \ ATOM 309 CA VAL A 365 37.056 151.249 45.747 1.00 43.27 C \ ATOM 310 CA PHE A 366 39.196 154.412 45.808 1.00 44.95 C \ ATOM 311 CA LEU A 367 39.944 155.520 49.363 1.00 46.79 C \ ATOM 312 CA LYS A 368 39.415 159.158 48.315 1.00 50.56 C \ ATOM 313 CA ASP A 369 35.793 159.304 47.186 1.00 51.74 C \ ATOM 314 CA ASN A 370 35.066 155.682 48.122 1.00 42.34 C \ ATOM 315 CA SER A 371 33.990 155.142 44.505 1.00 42.90 C \ ATOM 316 CA VAL A 372 34.275 151.874 42.568 1.00 41.75 C \ ATOM 317 CA ALA A 373 37.510 151.639 40.573 1.00 42.29 C \ ATOM 318 CA ALA A 374 40.785 149.593 39.851 1.00 47.04 C \ ATOM 319 CA VAL A 375 43.698 149.875 37.411 1.00 45.67 C \ ATOM 320 CA HIS A 376 45.141 153.356 37.480 1.00 47.09 C \ ATOM 321 CA ASN A 377 46.657 154.668 34.270 1.00 43.52 C \ ATOM 322 CA LYS A 378 48.312 158.024 33.660 1.00 47.10 C \ ATOM 323 CA THR A 379 49.937 158.932 30.348 1.00 51.00 C \ ATOM 324 CA ASP A 380 50.908 161.969 28.345 1.00 47.41 C \ ATOM 325 CA TYR A 381 50.804 162.041 24.568 1.00 36.63 C \ ATOM 326 CA ILE A 382 47.324 171.661 25.530 1.00 38.61 C \ ATOM 327 CA GLU A 383 44.003 170.887 23.930 1.00 42.83 C \ ATOM 328 CA THR A 384 42.992 167.257 24.241 1.00 44.29 C \ ATOM 329 CA THR A 385 40.439 165.323 22.193 1.00 44.91 C \ ATOM 330 CA SER A 386 39.646 161.714 23.020 1.00 42.59 C \ ATOM 331 CA THR A 387 37.755 158.694 21.749 1.00 40.46 C \ ATOM 332 CA GLU A 388 36.541 155.802 23.859 1.00 35.79 C \ ATOM 333 CA TYR A 389 36.490 152.185 22.690 1.00 36.96 C \ ATOM 334 CA SER A 390 34.966 149.289 24.545 1.00 42.67 C \ ATOM 335 CA LYS A 391 51.793 153.656 19.796 1.00 39.74 C \ ATOM 336 CA GLY A 392 48.784 152.749 17.673 1.00 36.06 C \ ATOM 337 CA LYS A 393 47.817 151.235 14.334 1.00 39.02 C \ ATOM 338 CA ILE A 394 45.329 151.993 11.559 1.00 31.80 C \ ATOM 339 CA ASN A 395 43.365 148.978 10.313 1.00 37.10 C \ ATOM 340 CA LEU A 396 41.890 149.219 6.818 1.00 34.47 C \ ATOM 341 CA ASP A 397 39.224 146.793 5.565 1.00 38.00 C \ ATOM 342 CA HIS A 398 37.781 147.084 2.084 1.00 38.37 C \ ATOM 343 CA SER A 399 34.853 144.760 1.412 1.00 39.17 C \ ATOM 344 CA GLY A 400 33.065 147.065 -1.006 1.00 36.17 C \ ATOM 345 CA ALA A 401 31.875 146.041 -4.455 1.00 33.72 C \ ATOM 346 CA TYR A 402 34.121 148.603 -6.153 1.00 31.59 C \ ATOM 347 CA VAL A 403 37.705 149.728 -6.704 1.00 31.83 C \ ATOM 348 CA ALA A 404 38.936 152.224 -4.130 1.00 29.84 C \ ATOM 349 CA GLN A 405 42.035 154.232 -3.334 1.00 25.58 C \ ATOM 350 CA PHE A 406 43.262 155.498 -0.003 1.00 26.27 C \ ATOM 351 CA GLU A 407 45.091 158.476 1.277 1.00 27.26 C \ ATOM 352 CA VAL A 408 46.556 158.119 4.739 1.00 26.76 C \ ATOM 353 CA ALA A 409 48.826 160.851 6.074 1.00 25.38 C \ ATOM 354 CA TRP A 410 50.050 162.155 9.411 1.00 26.91 C \ ATOM 355 CA ASP A 411 52.825 164.108 11.098 1.00 34.42 C \ ATOM 356 CA GLU A 412 55.425 162.975 13.618 1.00 37.51 C \ ATOM 357 CA VAL A 413 56.146 165.601 16.272 1.00 38.86 C \ ATOM 358 CA SER A 414 59.429 166.425 17.996 1.00 38.79 C \ ATOM 359 CA TYR A 415 60.785 169.501 19.781 1.00 40.52 C \ ATOM 360 CA ASP A 416 63.862 171.526 18.930 1.00 51.58 C \ ATOM 361 CA LYS A 417 66.338 172.745 21.572 1.00 61.35 C \ ATOM 362 CA GLU A 418 64.017 175.746 22.023 1.00 64.27 C \ ATOM 363 CA GLY A 419 61.166 173.430 23.005 1.00 56.27 C \ ATOM 364 CA ASN A 420 59.432 174.311 19.741 1.00 54.47 C \ ATOM 365 CA GLU A 421 57.416 171.794 17.748 1.00 48.01 C \ ATOM 366 CA VAL A 422 58.739 170.236 14.566 1.00 43.15 C \ ATOM 367 CA LEU A 423 56.394 168.286 12.329 1.00 40.65 C \ ATOM 368 CA THR A 424 57.604 165.679 9.871 1.00 38.91 C \ ATOM 369 CA HIS A 425 55.010 164.607 7.306 1.00 39.95 C \ ATOM 370 CA LYS A 426 54.474 160.893 6.630 1.00 33.96 C \ ATOM 371 CA THR A 427 52.212 158.982 4.246 1.00 34.00 C \ ATOM 372 CA TRP A 428 51.189 155.377 3.650 1.00 32.59 C \ ATOM 373 CA ASP A 429 53.116 153.921 0.685 1.00 36.57 C \ ATOM 374 CA GLY A 430 49.878 152.363 -0.473 1.00 29.69 C \ ATOM 375 CA ASN A 431 48.254 155.749 -1.121 1.00 31.75 C \ ATOM 376 CA TYR A 432 46.533 156.334 -4.476 1.00 33.47 C \ ATOM 377 CA GLN A 433 46.597 152.696 -5.519 1.00 33.94 C \ ATOM 378 CA ASP A 434 43.681 150.498 -6.556 1.00 37.22 C \ ATOM 379 CA LYS A 435 42.426 148.083 -3.901 1.00 37.91 C \ ATOM 380 CA THR A 436 39.725 145.555 -4.788 1.00 45.89 C \ ATOM 381 CA ALA A 437 37.220 143.110 -3.253 1.00 52.93 C \ ATOM 382 CA HIS A 438 38.667 142.432 0.186 1.00 50.13 C \ ATOM 383 CA TYR A 439 41.938 144.068 0.971 1.00 38.33 C \ ATOM 384 CA SER A 440 43.295 144.221 4.512 1.00 38.27 C \ ATOM 385 CA THR A 441 46.256 146.150 5.856 1.00 38.52 C \ ATOM 386 CA VAL A 442 47.715 147.726 8.962 1.00 32.22 C \ ATOM 387 CA ILE A 443 49.507 151.050 9.066 1.00 32.01 C \ ATOM 388 CA PRO A 444 51.506 151.262 12.299 1.00 35.49 C \ ATOM 389 CA LEU A 445 51.908 154.729 13.834 1.00 36.22 C \ ATOM 390 CA GLU A 446 54.569 156.055 16.182 1.00 36.18 C \ ATOM 391 CA ALA A 447 53.503 157.269 19.648 1.00 35.41 C \ ATOM 392 CA ASN A 448 54.291 160.803 18.454 1.00 32.86 C \ ATOM 393 CA ALA A 449 51.910 160.646 15.489 1.00 31.09 C \ ATOM 394 CA ARG A 450 49.739 163.741 14.995 1.00 31.81 C \ ATOM 395 CA ASN A 451 47.370 165.368 12.501 1.00 30.86 C \ ATOM 396 CA ILE A 452 46.226 161.909 11.359 1.00 27.49 C \ ATOM 397 CA ARG A 453 43.905 161.819 8.333 1.00 30.37 C \ ATOM 398 CA ILE A 454 42.328 158.790 6.649 1.00 27.84 C \ ATOM 399 CA LYS A 455 40.539 159.049 3.308 1.00 26.69 C \ ATOM 400 CA ALA A 456 39.077 156.537 0.884 1.00 30.28 C \ ATOM 401 CA ARG A 457 37.595 157.271 -2.533 1.00 29.83 C \ ATOM 402 CA GLU A 458 35.602 155.036 -4.890 1.00 29.61 C \ ATOM 403 CA CYS A 459 36.946 154.939 -8.421 1.00 38.86 C \ ATOM 404 CA THR A 460 34.059 156.068 -10.622 1.00 39.59 C \ ATOM 405 CA GLY A 461 35.065 159.183 -12.544 1.00 38.13 C \ ATOM 406 CA LEU A 462 38.062 160.480 -14.453 1.00 33.90 C \ ATOM 407 CA ALA A 463 40.726 160.660 -11.737 1.00 30.15 C \ ATOM 408 CA TRP A 464 41.442 160.891 -7.986 1.00 32.98 C \ ATOM 409 CA GLU A 465 40.468 164.582 -7.872 1.00 38.03 C \ ATOM 410 CA TRP A 466 36.959 163.848 -9.162 1.00 32.97 C \ ATOM 411 CA TRP A 467 36.257 160.603 -7.314 1.00 31.84 C \ ATOM 412 CA ARG A 468 33.624 160.136 -4.629 1.00 31.47 C \ ATOM 413 CA ASP A 469 34.646 160.117 -0.944 1.00 28.43 C \ ATOM 414 CA VAL A 470 33.743 156.853 0.848 1.00 23.54 C \ ATOM 415 CA ILE A 471 35.405 158.001 4.091 1.00 25.16 C \ ATOM 416 CA SER A 472 37.104 161.299 4.888 1.00 24.75 C \ ATOM 417 CA GLU A 473 38.492 161.923 8.357 1.00 25.16 C \ ATOM 418 CA TYR A 474 40.782 164.614 9.709 1.00 26.80 C \ ATOM 419 CA ASP A 475 42.555 164.868 13.030 1.00 34.35 C \ ATOM 420 CA VAL A 476 41.725 161.253 13.881 1.00 35.41 C \ ATOM 421 CA PRO A 477 42.693 160.834 17.558 1.00 40.41 C \ ATOM 422 CA LEU A 478 45.627 158.413 17.935 1.00 40.50 C \ ATOM 423 CA THR A 479 44.699 155.353 19.999 1.00 45.33 C \ ATOM 424 CA ASN A 480 45.661 151.652 20.121 1.00 44.74 C \ ATOM 425 CA ASN A 481 43.530 150.692 17.141 1.00 36.66 C \ ATOM 426 CA ILE A 482 41.887 152.866 14.493 1.00 31.44 C \ ATOM 427 CA ASN A 483 39.532 150.612 12.558 1.00 32.39 C \ ATOM 428 CA VAL A 484 38.431 151.911 9.179 1.00 30.74 C \ ATOM 429 CA SER A 485 36.099 149.771 7.090 1.00 31.12 C \ ATOM 430 CA ILE A 486 34.514 150.446 3.706 1.00 33.70 C \ ATOM 431 CA TRP A 487 31.829 148.404 1.967 1.00 37.46 C \ ATOM 432 CA GLY A 488 28.699 148.836 -0.119 1.00 36.89 C \ ATOM 433 CA THR A 489 28.067 149.418 -3.790 1.00 40.45 C \ ATOM 434 CA THR A 490 29.350 151.893 -6.343 1.00 42.17 C \ ATOM 435 CA LEU A 491 26.090 153.833 -6.089 1.00 42.91 C \ ATOM 436 CA TYR A 492 25.845 153.547 -2.325 1.00 39.54 C \ ATOM 437 CA PRO A 493 29.136 152.891 -0.565 1.00 35.87 C \ ATOM 438 CA GLY A 494 29.256 152.671 3.232 1.00 31.47 C \ ATOM 439 CA SER A 495 31.964 153.172 5.864 1.00 35.02 C \ ATOM 440 CA SER A 496 32.800 153.440 9.549 1.00 36.33 C \ ATOM 441 CA ILE A 497 35.665 154.204 11.895 1.00 34.06 C \ ATOM 442 CA THR A 498 35.935 152.663 15.355 1.00 37.92 C \ ATOM 443 CA TYR A 499 38.514 152.899 18.127 1.00 44.44 C \ ATOM 444 CA ASN A 500 40.157 150.710 20.781 1.00 56.44 C \ TER 445 ASN A 500 \ MASTER 275 0 0 0 0 0 0 6 444 1 0 35 \ END \ """, "2bk1chainA") cmd.hide("all") cmd.color('grey70', "2bk1chainA") cmd.show('cartoon', "2bk1chainA") cmd.center("2bk1chainA", state=0, origin=1) cmd.zoom("2bk1chainA", animate=-1) cmd.select("e2bk1A2", "c. A & i. 53-386") cmd.color("red", "e2bk1A2") cmd.disable("e2bk1A2") cmd.select("e2bk1A1", "c. A & i. 387-496") cmd.color("green", "e2bk1A1") cmd.disable("e2bk1A1")