cmd.read_pdbstr("""\ HEADER VIRAL PROTEIN 03-MAR-10 2X7R \ TITLE CRYSTAL STRUCTURE OF A LATE FUSION INTERMEDIATE OF HIV-1 GP41 \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN GP41; \ COMPND 3 CHAIN: A, D, N; \ COMPND 4 FRAGMENT: EXTRA CELLULAR DOMAIN, RESIDUES 534-581; \ COMPND 5 ENGINEERED: YES; \ COMPND 6 MOL_ID: 2; \ COMPND 7 MOLECULE: TRANSMEMBRANE PROTEIN GP41; \ COMPND 8 CHAIN: B, C, E; \ COMPND 9 FRAGMENT: EXTRA CELLULAR DOMAIN, RESIDUES 629-683; \ COMPND 10 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 \ SOURCE 3 ISOLATE; \ SOURCE 4 ORGANISM_TAXID: 82834; \ SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA3 (DE3); \ SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET11; \ SOURCE 9 MOL_ID: 2; \ SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 LW12.3 \ SOURCE 11 ISOLATE; \ SOURCE 12 ORGANISM_TAXID: 82834; \ SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 15 EXPRESSION_SYSTEM_STRAIN: ROSETTA3 (DE3); \ SOURCE 16 EXPRESSION_SYSTEM_VECTOR: PET11 \ KEYWDS ENVELOPE GLYCOPROTEIN, MEMBRANE ANCHORED FUSION PROTEIN, VIRAL \ KEYWDS 2 PROTEIN \ EXPDTA X-RAY DIFFRACTION \ AUTHOR G.NATRAJAN,V.BUZON,W.WEISSENHORN \ REVDAT 2 20-DEC-23 2X7R 1 REMARK LINK \ REVDAT 1 26-MAY-10 2X7R 0 \ JRNL AUTH V.BUZON,G.NATRAJAN,D.SCHIBLI,F.CAMPELO,M.M.KOZLOV, \ JRNL AUTH 2 W.WEISSENHORN \ JRNL TITL CRYSTAL STRUCTURE OF HIV-1 GP41 INCLUDING BOTH FUSION \ JRNL TITL 2 PEPTIDE AND MEMBRANE PROXIMAL EXTERNAL REGIONS. \ JRNL REF PLOS PATHOG. V. 6 880 2010 \ JRNL REFN ISSN 1553-7366 \ JRNL PMID 20463810 \ JRNL DOI 10.1371/JOURNAL.PPAT.1000880 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.00 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) \ REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN \ REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, \ REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, \ REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, \ REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, \ REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, \ REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT \ REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 \ REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.480 \ REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 \ REMARK 3 NUMBER OF REFLECTIONS : 22145 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 \ REMARK 3 R VALUE (WORKING SET) : 0.177 \ REMARK 3 FREE R VALUE : 0.214 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 \ REMARK 3 FREE R VALUE TEST SET COUNT : 1149 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). \ REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE \ REMARK 3 1 15.7288 - 3.9812 0.94 2734 152 0.1816 0.2105 \ REMARK 3 2 3.9812 - 3.1685 0.95 2707 151 0.1463 0.1923 \ REMARK 3 3 3.1685 - 2.7704 0.95 2744 132 0.1796 0.2259 \ REMARK 3 4 2.7704 - 2.5183 0.95 2727 144 0.1801 0.2148 \ REMARK 3 5 2.5183 - 2.3384 0.95 2713 147 0.1814 0.2234 \ REMARK 3 6 2.3384 - 2.2009 0.92 2597 144 0.1900 0.2271 \ REMARK 3 7 2.2009 - 2.0910 0.87 2536 131 0.1916 0.2240 \ REMARK 3 8 2.0910 - 2.0001 0.78 2201 139 0.2132 0.2420 \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL \ REMARK 3 SOLVENT RADIUS : 1.11 \ REMARK 3 SHRINKAGE RADIUS : 0.90 \ REMARK 3 K_SOL : 0.37 \ REMARK 3 B_SOL : 87.86 \ REMARK 3 \ REMARK 3 ERROR ESTIMATES. \ REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL \ REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.270 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : 23.20 \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 1.38110 \ REMARK 3 B22 (A**2) : 1.38110 \ REMARK 3 B33 (A**2) : -3.47710 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 0.00000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 TWINNING INFORMATION. \ REMARK 3 FRACTION: 0.5050 \ REMARK 3 OPERATOR: H,-H-K,-L \ REMARK 3 \ REMARK 3 DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 RMSD COUNT \ REMARK 3 BOND : 0.008 2514 \ REMARK 3 ANGLE : 1.119 3403 \ REMARK 3 CHIRALITY : 0.075 377 \ REMARK 3 PLANARITY : 0.003 440 \ REMARK 3 DIHEDRAL : 20.539 939 \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 NCS DETAILS \ REMARK 3 NUMBER OF NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 2X7R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-MAR-10. \ REMARK 100 THE DEPOSITION ID IS D_1290043096. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 01-JUN-09 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 6.0 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : ESRF \ REMARK 200 BEAMLINE : ID14-4 \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.9700 \ REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF \ REMARK 200 OPTICS : TOROIDAL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : ADSC CCD \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM \ REMARK 200 DATA SCALING SOFTWARE : SCALA \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22184 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 \ REMARK 200 RESOLUTION RANGE LOW (A) : 91.380 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.200 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 \ REMARK 200 DATA REDUNDANCY : 5.900 \ REMARK 200 R MERGE (I) : 0.06000 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 17.9000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 \ REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 \ REMARK 200 R MERGE FOR SHELL (I) : 0.33000 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : 2.800 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: MOLREP \ REMARK 200 STARTING MODEL: PDB ENTRY 1AIK \ REMARK 200 \ REMARK 200 REMARK: NONE \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 40.16 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CITRIC ACID PH 6, 60% MPD, PH 6.0 \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -Y,X-Y,Z \ REMARK 290 3555 -X+Y,-X,Z \ REMARK 290 4555 -X,-Y,Z+1/2 \ REMARK 290 5555 Y,-X+Y,Z+1/2 \ REMARK 290 6555 X-Y,X,Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 91.38400 \ REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 91.38400 \ REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 91.38400 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2, 3 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 2010 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 9160 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, N \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 2200 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 8340 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.5 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 3 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 6830 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.9 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 375 \ REMARK 375 SPECIAL POSITION \ REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS \ REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL \ REMARK 375 POSITIONS. \ REMARK 375 \ REMARK 375 ATOM RES CSSEQI \ REMARK 375 HOH A2003 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH A2004 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH D2009 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH D2012 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH N2003 LIES ON A SPECIAL POSITION. \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 GLY A 520 \ REMARK 465 ALA A 521 \ REMARK 465 MET A 522 \ REMARK 465 ASP A 523 \ REMARK 465 ASP A 524 \ REMARK 465 ASP A 525 \ REMARK 465 ASP A 526 \ REMARK 465 LYS A 527 \ REMARK 465 SER A 528 \ REMARK 465 THR A 529 \ REMARK 465 MET A 530 \ REMARK 465 GLY A 531 \ REMARK 465 ALA A 532 \ REMARK 465 ALA A 533 \ REMARK 465 SER A 534 \ REMARK 465 MET A 535 \ REMARK 465 THR A 536 \ REMARK 465 LEU A 537 \ REMARK 465 THR A 538 \ REMARK 465 VAL A 539 \ REMARK 465 GLN A 540 \ REMARK 465 ALA A 541 \ REMARK 465 LEU A 581 \ REMARK 465 GLY B 621 \ REMARK 465 ALA B 622 \ REMARK 465 TRP B 666 \ REMARK 465 ALA B 667 \ REMARK 465 SER B 668 \ REMARK 465 LEU B 669 \ REMARK 465 TRP B 670 \ REMARK 465 ASN B 671 \ REMARK 465 TRP B 672 \ REMARK 465 PHE B 673 \ REMARK 465 ASN B 674 \ REMARK 465 ILE B 675 \ REMARK 465 THR B 676 \ REMARK 465 ASN B 677 \ REMARK 465 TRP B 678 \ REMARK 465 LEU B 679 \ REMARK 465 TRP B 680 \ REMARK 465 TYR B 681 \ REMARK 465 ILE B 682 \ REMARK 465 LYS B 683 \ REMARK 465 GLY C 621 \ REMARK 465 ALA C 622 \ REMARK 465 MET C 623 \ REMARK 465 ILE C 682 \ REMARK 465 LYS C 683 \ REMARK 465 GLY D 520 \ REMARK 465 ALA D 521 \ REMARK 465 MET D 522 \ REMARK 465 ASP D 523 \ REMARK 465 ASP D 524 \ REMARK 465 ASP D 525 \ REMARK 465 ASP D 526 \ REMARK 465 LYS D 527 \ REMARK 465 SER D 528 \ REMARK 465 THR D 529 \ REMARK 465 MET D 530 \ REMARK 465 GLY D 531 \ REMARK 465 ALA D 532 \ REMARK 465 ALA D 533 \ REMARK 465 GLY E 621 \ REMARK 465 ALA E 622 \ REMARK 465 MET E 623 \ REMARK 465 TRP E 678 \ REMARK 465 LEU E 679 \ REMARK 465 TRP E 680 \ REMARK 465 TYR E 681 \ REMARK 465 ILE E 682 \ REMARK 465 LYS E 683 \ REMARK 465 GLY N 520 \ REMARK 465 ALA N 521 \ REMARK 465 MET N 522 \ REMARK 465 ASP N 523 \ REMARK 465 ASP N 524 \ REMARK 465 ASP N 525 \ REMARK 465 ASP N 526 \ REMARK 465 LYS N 527 \ REMARK 465 SER N 528 \ REMARK 465 THR N 529 \ REMARK 465 MET N 530 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 ASN E 674 CG OD1 ND2 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 GLN A 543 143.77 -38.07 \ REMARK 500 ASN C 671 6.47 -69.06 \ REMARK 500 ASN C 674 -70.49 -65.69 \ REMARK 500 THR C 676 -75.90 -62.56 \ REMARK 500 TRP C 678 156.42 174.97 \ REMARK 500 ALA D 541 87.13 -34.86 \ REMARK 500 ALA D 541 88.52 -34.86 \ REMARK 500 ILE D 580 65.52 -108.81 \ REMARK 500 TRP E 672 -80.28 -57.63 \ REMARK 500 ILE E 675 19.89 -66.47 \ REMARK 500 ALA N 532 122.90 -38.43 \ REMARK 500 ALA N 533 53.49 -61.04 \ REMARK 500 MET N 535 -73.55 -47.98 \ REMARK 500 ALA N 578 28.31 -75.02 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA E 1678 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC2 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 1679 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC3 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1666 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 1DF4 RELATED DB: PDB \ REMARK 900 INTERACTIONS BETWEEN HIV-1 GP41 CORE AND DETERGENTS AND THEIR \ REMARK 900 IMPLICATIONS FOR MEMBRANE FUSION \ REMARK 900 RELATED ID: 1OPN RELATED DB: PDB \ REMARK 900 THEORETICAL MODEL OF CCR5 RECEPTOR IN COMPLEX WITH HIVGP120 \ REMARK 900 ENVELOPE GLYCOPROTEIN AND CD4 RECEPTOR \ REMARK 900 RELATED ID: 1DF5 RELATED DB: PDB \ REMARK 900 INTERACTIONS BETWEEN HIV-1 GP41 CORE AND DETERGENTS AND THEIR \ REMARK 900 IMPLICATIONS FOR MEMBRANE FUSION \ REMARK 900 RELATED ID: 1DLB RELATED DB: PDB \ REMARK 900 HELICAL INTERACTIONS IN THE HIV-1 GP41 CORE REVEALS STRUCTURAL \ REMARK 900 BASIS FOR THE INHIBITORY ACTIVITY OF GP41 PEPTIDES \ REMARK 900 RELATED ID: 1OPW RELATED DB: PDB \ REMARK 900 THEORETICAL MODEL OF CCR5 RECEPTOR IN COMPLEX WITH HIVGP120 \ REMARK 900 ENVELOPE GLYCOPROTEIN AND CD4 RECEPTOR \ REMARK 900 RELATED ID: 1GC1 RELATED DB: PDB \ REMARK 900 HIV-1 GP120 CORE COMPLEXED WITH CD4 AND A NEUTRALIZING HUMAN \ REMARK 900 ANTIBODY \ REMARK 900 RELATED ID: 1OPT RELATED DB: PDB \ REMARK 900 THEORETICAL MODEL OF CCR5 RECEPTOR IN COMPLEX WITH HIVGP120 \ REMARK 900 ENVELOPE GLYCOPROTEIN AND CD4 RECEPTOR \ REMARK 900 RELATED ID: 1K33 RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE GP41 CORE MUTANT \ REMARK 900 RELATED ID: 1RZJ RELATED DB: PDB \ REMARK 900 HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4AND \ REMARK 900 INDUCED NEUTRALIZING ANTIBODY 17B \ REMARK 900 RELATED ID: 1G9M RELATED DB: PDB \ REMARK 900 HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4AND \ REMARK 900 INDUCED NEUTRALIZING ANTIBODY 17B \ REMARK 900 RELATED ID: 1K34 RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF GP41 CORE MUTANT \ REMARK 900 RELATED ID: 2CMR RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF THE HIV-1 NEUTRALIZING ANTIBODY D5 FAB BOUND \ REMARK 900 TO THE GP41 INNER -CORE MIMETIC 5-HELIX \ REMARK 900 RELATED ID: 1AIK RELATED DB: PDB \ REMARK 900 HIV GP41 CORE STRUCTURE \ REMARK 900 RELATED ID: 1GZL RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF C14LINKMID/IQN17: A CROSS-LINKED INHIBITOR OF \ REMARK 900 HIV-1 ENTRY BOUND TO THE GP41 HYDROPHOBIC POCKET \ REMARK 900 RELATED ID: 1MZI RELATED DB: PDB \ REMARK 900 SOLUTION ENSEMBLE STRUCTURES OF HIV-1 GP41 2F5 MAB EPITOPE \ DBREF 2X7R A 520 527 PDB 2X7R 2X7R 520 527 \ DBREF 2X7R A 528 581 UNP P04578 ENV_HV1H2 528 581 \ DBREF 2X7R B 621 628 PDB 2X7R 2X7R 621 628 \ DBREF 2X7R B 629 683 UNP P04578 ENV_HV1H2 629 683 \ DBREF 2X7R C 621 628 PDB 2X7R 2X7R 621 628 \ DBREF 2X7R C 629 683 UNP P04578 ENV_HV1H2 629 683 \ DBREF 2X7R D 520 527 PDB 2X7R 2X7R 520 527 \ DBREF 2X7R D 528 581 UNP P04578 ENV_HV1H2 528 581 \ DBREF 2X7R E 621 628 PDB 2X7R 2X7R 621 628 \ DBREF 2X7R E 629 683 UNP P04578 ENV_HV1H2 629 683 \ DBREF 2X7R N 520 527 PDB 2X7R 2X7R 520 527 \ DBREF 2X7R N 528 581 UNP P04578 ENV_HV1H2 528 581 \ SEQRES 1 A 62 GLY ALA MET ASP ASP ASP ASP LYS SER THR MET GLY ALA \ SEQRES 2 A 62 ALA SER MET THR LEU THR VAL GLN ALA ARG GLN LEU LEU \ SEQRES 3 A 62 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA \ SEQRES 4 A 62 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP \ SEQRES 5 A 62 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU \ SEQRES 1 B 63 GLY ALA MET ASP ASP ASP ASP LYS MET GLU TRP ASP ARG \ SEQRES 2 B 63 GLU ILE ASN ASN TYR THR SER LEU ILE HIS SER LEU ILE \ SEQRES 3 B 63 GLU GLU SER GLN ASN GLN GLN GLU LYS ASN GLU GLN GLU \ SEQRES 4 B 63 LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN TRP \ SEQRES 5 B 63 PHE ASN ILE THR ASN TRP LEU TRP TYR ILE LYS \ SEQRES 1 C 63 GLY ALA MET ASP ASP ASP ASP LYS MET GLU TRP ASP ARG \ SEQRES 2 C 63 GLU ILE ASN ASN TYR THR SER LEU ILE HIS SER LEU ILE \ SEQRES 3 C 63 GLU GLU SER GLN ASN GLN GLN GLU LYS ASN GLU GLN GLU \ SEQRES 4 C 63 LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN TRP \ SEQRES 5 C 63 PHE ASN ILE THR ASN TRP LEU TRP TYR ILE LYS \ SEQRES 1 D 62 GLY ALA MET ASP ASP ASP ASP LYS SER THR MET GLY ALA \ SEQRES 2 D 62 ALA SER MET THR LEU THR VAL GLN ALA ARG GLN LEU LEU \ SEQRES 3 D 62 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA \ SEQRES 4 D 62 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP \ SEQRES 5 D 62 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU \ SEQRES 1 E 63 GLY ALA MET ASP ASP ASP ASP LYS MET GLU TRP ASP ARG \ SEQRES 2 E 63 GLU ILE ASN ASN TYR THR SER LEU ILE HIS SER LEU ILE \ SEQRES 3 E 63 GLU GLU SER GLN ASN GLN GLN GLU LYS ASN GLU GLN GLU \ SEQRES 4 E 63 LEU LEU GLU LEU ASP LYS TRP ALA SER LEU TRP ASN TRP \ SEQRES 5 E 63 PHE ASN ILE THR ASN TRP LEU TRP TYR ILE LYS \ SEQRES 1 N 62 GLY ALA MET ASP ASP ASP ASP LYS SER THR MET GLY ALA \ SEQRES 2 N 62 ALA SER MET THR LEU THR VAL GLN ALA ARG GLN LEU LEU \ SEQRES 3 N 62 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA \ SEQRES 4 N 62 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP \ SEQRES 5 N 62 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU \ HET NA A1581 1 \ HET NA B1666 1 \ HET NA E1678 1 \ HET CL E1679 1 \ HETNAM NA SODIUM ION \ HETNAM CL CHLORIDE ION \ FORMUL 7 NA 3(NA 1+) \ FORMUL 10 CL CL 1- \ FORMUL 11 HOH *56(H2 O) \ HELIX 1 1 GLN A 543 ILE A 580 1 38 \ HELIX 2 2 MET B 623 LYS B 665 1 43 \ HELIX 3 3 ASP C 626 TRP C 678 1 53 \ HELIX 4 4 SER D 534 ALA D 541 1 8 \ HELIX 5 5 ARG D 542 ALA D 578 1 37 \ HELIX 6 6 ASP E 625 LEU E 669 1 45 \ HELIX 7 7 TRP E 670 ILE E 675 1 6 \ HELIX 8 8 SER N 534 ALA N 578 1 45 \ LINK NA NA A1581 O HOH A2006 1555 1555 3.20 \ LINK OE2 GLU E 657 NA NA E1678 1555 1555 3.20 \ SITE 1 AC1 3 ASN B 651 GLU E 657 CL E1679 \ SITE 1 AC2 3 HOH B2009 GLU E 657 NA E1678 \ SITE 1 AC3 2 GLU D 560 GLN E 650 \ CRYST1 57.422 57.422 182.768 90.00 90.00 120.00 P 63 18 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.017415 0.010055 0.000000 0.00000 \ SCALE2 0.000000 0.020109 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.005471 0.00000 \ ATOM 1 N ARG A 542 45.157 26.806 -31.953 1.00 35.82 N \ ATOM 2 CA ARG A 542 45.465 28.235 -31.869 1.00 44.21 C \ ATOM 3 C ARG A 542 46.884 28.552 -32.338 1.00 42.89 C \ ATOM 4 O ARG A 542 47.784 27.715 -32.230 1.00 41.75 O \ ATOM 5 CB ARG A 542 45.289 28.752 -30.434 1.00 49.43 C \ ATOM 6 CG ARG A 542 43.856 28.702 -29.913 1.00 53.61 C \ ATOM 7 CD ARG A 542 43.652 29.687 -28.767 1.00 54.61 C \ ATOM 8 NE ARG A 542 42.438 29.391 -28.008 1.00 59.65 N \ ATOM 9 CZ ARG A 542 42.424 28.713 -26.863 1.00 58.25 C \ ATOM 10 NH1 ARG A 542 43.558 28.272 -26.329 1.00 49.41 N \ ATOM 11 NH2 ARG A 542 41.276 28.481 -26.244 1.00 63.95 N \ ATOM 12 N GLN A 543 47.088 29.760 -32.855 1.00 40.02 N \ ATOM 13 CA GLN A 543 48.443 30.227 -33.105 1.00 37.60 C \ ATOM 14 C GLN A 543 49.333 29.737 -31.958 1.00 30.12 C \ ATOM 15 O GLN A 543 48.887 29.656 -30.816 1.00 27.47 O \ ATOM 16 CB GLN A 543 48.472 31.756 -33.171 1.00 29.51 C \ ATOM 17 CG GLN A 543 49.754 32.323 -33.716 1.00 28.44 C \ ATOM 18 CD GLN A 543 49.882 32.118 -35.198 1.00 28.66 C \ ATOM 19 OE1 GLN A 543 49.040 32.572 -35.968 1.00 35.59 O \ ATOM 20 NE2 GLN A 543 50.929 31.421 -35.612 1.00 30.09 N \ ATOM 21 N LEU A 544 50.573 29.380 -32.269 1.00 25.42 N \ ATOM 22 CA LEU A 544 51.535 29.062 -31.235 1.00 23.89 C \ ATOM 23 C LEU A 544 51.835 30.351 -30.464 1.00 25.77 C \ ATOM 24 O LEU A 544 52.095 30.329 -29.244 1.00 22.37 O \ ATOM 25 CB LEU A 544 52.807 28.500 -31.861 1.00 23.98 C \ ATOM 26 CG LEU A 544 53.793 27.776 -30.957 1.00 25.29 C \ ATOM 27 CD1 LEU A 544 53.079 26.645 -30.274 1.00 26.49 C \ ATOM 28 CD2 LEU A 544 54.984 27.252 -31.774 1.00 25.20 C \ ATOM 29 N LEU A 545 51.782 31.477 -31.173 1.00 23.28 N \ ATOM 30 CA LEU A 545 52.137 32.770 -30.590 1.00 20.84 C \ ATOM 31 C LEU A 545 51.073 33.246 -29.614 1.00 25.41 C \ ATOM 32 O LEU A 545 51.372 33.811 -28.558 1.00 26.03 O \ ATOM 33 CB LEU A 545 52.340 33.806 -31.682 1.00 19.01 C \ ATOM 34 CG LEU A 545 53.495 33.535 -32.633 1.00 20.61 C \ ATOM 35 CD1 LEU A 545 53.474 34.559 -33.783 1.00 26.13 C \ ATOM 36 CD2 LEU A 545 54.812 33.566 -31.884 1.00 16.61 C \ ATOM 37 N SER A 546 49.825 33.016 -29.988 1.00 22.69 N \ ATOM 38 CA SER A 546 48.695 33.261 -29.117 1.00 23.84 C \ ATOM 39 C SER A 546 48.893 32.520 -27.787 1.00 24.40 C \ ATOM 40 O SER A 546 48.716 33.096 -26.708 1.00 27.08 O \ ATOM 41 CB SER A 546 47.421 32.788 -29.816 1.00 24.14 C \ ATOM 42 OG SER A 546 46.271 33.315 -29.203 1.00 38.16 O \ ATOM 43 N GLY A 547 49.265 31.245 -27.869 1.00 16.51 N \ ATOM 44 CA GLY A 547 49.456 30.417 -26.686 1.00 21.18 C \ ATOM 45 C GLY A 547 50.598 30.866 -25.800 1.00 22.06 C \ ATOM 46 O GLY A 547 50.446 30.998 -24.585 1.00 21.83 O \ ATOM 47 N ILE A 548 51.746 31.104 -26.421 1.00 19.29 N \ ATOM 48 CA ILE A 548 52.926 31.599 -25.730 1.00 20.27 C \ ATOM 49 C ILE A 548 52.629 32.904 -25.001 1.00 19.26 C \ ATOM 50 O ILE A 548 52.797 32.983 -23.796 1.00 20.11 O \ ATOM 51 CB ILE A 548 54.073 31.802 -26.704 1.00 19.35 C \ ATOM 52 CG1 ILE A 548 54.611 30.444 -27.153 1.00 21.07 C \ ATOM 53 CG2 ILE A 548 55.175 32.638 -26.068 1.00 19.27 C \ ATOM 54 CD1 ILE A 548 55.370 30.491 -28.447 1.00 14.34 C \ ATOM 55 N VAL A 549 52.170 33.914 -25.730 1.00 16.88 N \ ATOM 56 CA VAL A 549 51.827 35.188 -25.117 1.00 20.65 C \ ATOM 57 C VAL A 549 50.778 35.059 -24.002 1.00 22.70 C \ ATOM 58 O VAL A 549 50.946 35.640 -22.932 1.00 25.80 O \ ATOM 59 CB VAL A 549 51.403 36.226 -26.168 1.00 19.21 C \ ATOM 60 CG1 VAL A 549 50.970 37.525 -25.501 1.00 24.10 C \ ATOM 61 CG2 VAL A 549 52.552 36.492 -27.095 1.00 19.69 C \ ATOM 62 N GLN A 550 49.709 34.296 -24.232 1.00 23.55 N \ ATOM 63 CA GLN A 550 48.727 34.041 -23.165 1.00 26.44 C \ ATOM 64 C GLN A 550 49.359 33.277 -21.974 1.00 24.63 C \ ATOM 65 O GLN A 550 48.884 33.358 -20.837 1.00 18.18 O \ ATOM 66 CB GLN A 550 47.474 33.323 -23.712 1.00 24.20 C \ ATOM 67 CG GLN A 550 46.698 32.476 -22.670 1.00 30.74 C \ ATOM 68 CD GLN A 550 45.791 33.288 -21.720 1.00 44.01 C \ ATOM 69 OE1 GLN A 550 44.600 33.454 -21.992 1.00 52.69 O \ ATOM 70 NE2 GLN A 550 46.347 33.766 -20.594 1.00 31.49 N \ ATOM 71 N GLN A 551 50.445 32.557 -22.243 1.00 24.16 N \ ATOM 72 CA GLN A 551 51.123 31.784 -21.200 1.00 24.83 C \ ATOM 73 C GLN A 551 51.994 32.730 -20.375 1.00 21.38 C \ ATOM 74 O GLN A 551 52.141 32.569 -19.167 1.00 23.89 O \ ATOM 75 CB GLN A 551 51.960 30.658 -21.833 1.00 25.17 C \ ATOM 76 CG GLN A 551 52.871 29.863 -20.887 1.00 24.26 C \ ATOM 77 CD GLN A 551 52.112 28.867 -20.039 1.00 21.74 C \ ATOM 78 OE1 GLN A 551 50.984 29.133 -19.616 1.00 17.73 O \ ATOM 79 NE2 GLN A 551 52.724 27.708 -19.784 1.00 20.85 N \ ATOM 80 N GLN A 552 52.566 33.731 -21.025 1.00 19.23 N \ ATOM 81 CA GLN A 552 53.328 34.721 -20.289 1.00 19.05 C \ ATOM 82 C GLN A 552 52.424 35.449 -19.306 1.00 17.69 C \ ATOM 83 O GLN A 552 52.816 35.738 -18.173 1.00 20.80 O \ ATOM 84 CB GLN A 552 54.029 35.669 -21.251 1.00 15.94 C \ ATOM 85 CG GLN A 552 55.073 34.921 -22.061 1.00 18.38 C \ ATOM 86 CD GLN A 552 56.069 35.821 -22.730 1.00 21.26 C \ ATOM 87 OE1 GLN A 552 55.766 36.475 -23.725 1.00 23.25 O \ ATOM 88 NE2 GLN A 552 57.280 35.864 -22.189 1.00 28.55 N \ ATOM 89 N ASN A 553 51.196 35.719 -19.729 1.00 22.74 N \ ATOM 90 CA ASN A 553 50.223 36.336 -18.833 1.00 21.42 C \ ATOM 91 C ASN A 553 49.911 35.462 -17.619 1.00 21.83 C \ ATOM 92 O ASN A 553 49.826 35.954 -16.498 1.00 22.47 O \ ATOM 93 CB ASN A 553 48.927 36.661 -19.570 1.00 18.89 C \ ATOM 94 CG ASN A 553 48.007 37.504 -18.733 1.00 27.00 C \ ATOM 95 OD1 ASN A 553 48.409 38.554 -18.253 1.00 29.90 O \ ATOM 96 ND2 ASN A 553 46.783 37.043 -18.523 1.00 26.71 N \ ATOM 97 N ASN A 554 49.729 34.162 -17.841 1.00 18.94 N \ ATOM 98 CA ASN A 554 49.427 33.241 -16.744 1.00 19.27 C \ ATOM 99 C ASN A 554 50.533 33.210 -15.709 1.00 18.67 C \ ATOM 100 O ASN A 554 50.266 33.131 -14.515 1.00 17.78 O \ ATOM 101 CB ASN A 554 49.240 31.814 -17.261 1.00 24.50 C \ ATOM 102 CG ASN A 554 47.961 31.633 -18.040 1.00 30.25 C \ ATOM 103 OD1 ASN A 554 46.917 32.197 -17.697 1.00 31.42 O \ ATOM 104 ND2 ASN A 554 48.032 30.818 -19.094 1.00 32.79 N \ ATOM 105 N LEU A 555 51.779 33.227 -16.179 1.00 16.87 N \ ATOM 106 CA LEU A 555 52.934 33.125 -15.286 1.00 21.84 C \ ATOM 107 C LEU A 555 53.054 34.399 -14.444 1.00 16.80 C \ ATOM 108 O LEU A 555 53.211 34.328 -13.224 1.00 19.34 O \ ATOM 109 CB LEU A 555 54.230 32.825 -16.077 1.00 18.05 C \ ATOM 110 CG LEU A 555 54.391 31.422 -16.693 1.00 17.67 C \ ATOM 111 CD1 LEU A 555 55.732 31.251 -17.375 1.00 23.92 C \ ATOM 112 CD2 LEU A 555 54.219 30.316 -15.663 1.00 27.43 C \ ATOM 113 N LEU A 556 52.943 35.552 -15.105 1.00 19.16 N \ ATOM 114 CA LEU A 556 52.979 36.855 -14.436 1.00 20.19 C \ ATOM 115 C LEU A 556 51.956 36.907 -13.320 1.00 17.46 C \ ATOM 116 O LEU A 556 52.271 37.310 -12.199 1.00 23.08 O \ ATOM 117 CB LEU A 556 52.716 37.982 -15.449 1.00 22.40 C \ ATOM 118 CG LEU A 556 52.497 39.400 -14.903 1.00 18.47 C \ ATOM 119 CD1 LEU A 556 53.723 39.895 -14.197 1.00 18.80 C \ ATOM 120 CD2 LEU A 556 52.136 40.348 -16.025 1.00 17.74 C \ ATOM 121 N ARG A 557 50.729 36.495 -13.628 1.00 19.34 N \ ATOM 122 CA ARG A 557 49.662 36.473 -12.635 1.00 18.00 C \ ATOM 123 C ARG A 557 50.048 35.542 -11.489 1.00 20.48 C \ ATOM 124 O ARG A 557 49.787 35.837 -10.334 1.00 19.36 O \ ATOM 125 CB ARG A 557 48.318 36.033 -13.246 1.00 21.73 C \ ATOM 126 CG ARG A 557 47.824 36.884 -14.408 1.00 24.40 C \ ATOM 127 CD ARG A 557 46.307 37.098 -14.385 1.00 28.63 C \ ATOM 128 NE ARG A 557 45.526 35.867 -14.222 1.00 34.49 N \ ATOM 129 CZ ARG A 557 44.704 35.614 -13.200 1.00 42.17 C \ ATOM 130 NH1 ARG A 557 44.546 36.499 -12.220 1.00 38.88 N \ ATOM 131 NH2 ARG A 557 44.030 34.468 -13.153 1.00 40.58 N \ ATOM 132 N ALA A 558 50.672 34.416 -11.813 1.00 21.51 N \ ATOM 133 CA ALA A 558 51.118 33.478 -10.794 1.00 17.50 C \ ATOM 134 C ALA A 558 52.134 34.164 -9.898 1.00 21.21 C \ ATOM 135 O ALA A 558 52.070 34.067 -8.668 1.00 21.21 O \ ATOM 136 CB ALA A 558 51.724 32.270 -11.427 1.00 18.89 C \ ATOM 137 N ILE A 559 53.066 34.873 -10.523 1.00 20.42 N \ ATOM 138 CA ILE A 559 54.053 35.660 -9.782 1.00 21.07 C \ ATOM 139 C ILE A 559 53.398 36.678 -8.850 1.00 21.05 C \ ATOM 140 O ILE A 559 53.687 36.710 -7.651 1.00 21.28 O \ ATOM 141 CB ILE A 559 55.013 36.350 -10.742 1.00 17.14 C \ ATOM 142 CG1 ILE A 559 55.917 35.301 -11.369 1.00 16.16 C \ ATOM 143 CG2 ILE A 559 55.852 37.382 -10.023 1.00 20.18 C \ ATOM 144 CD1 ILE A 559 56.605 35.788 -12.618 1.00 18.34 C \ ATOM 145 N GLU A 560 52.501 37.490 -9.407 1.00 20.09 N \ ATOM 146 CA GLU A 560 51.781 38.502 -8.642 1.00 23.25 C \ ATOM 147 C GLU A 560 51.066 37.874 -7.466 1.00 22.82 C \ ATOM 148 O GLU A 560 51.115 38.395 -6.361 1.00 25.12 O \ ATOM 149 CB GLU A 560 50.757 39.216 -9.526 1.00 22.52 C \ ATOM 150 CG GLU A 560 51.374 40.008 -10.652 1.00 22.11 C \ ATOM 151 CD GLU A 560 50.348 40.468 -11.678 1.00 35.76 C \ ATOM 152 OE1 GLU A 560 49.160 40.117 -11.521 1.00 41.55 O \ ATOM 153 OE2 GLU A 560 50.724 41.174 -12.646 1.00 37.45 O \ ATOM 154 N ALA A 561 50.396 36.756 -7.718 1.00 22.14 N \ ATOM 155 CA ALA A 561 49.652 36.052 -6.688 1.00 25.42 C \ ATOM 156 C ALA A 561 50.615 35.560 -5.623 1.00 25.58 C \ ATOM 157 O ALA A 561 50.325 35.633 -4.424 1.00 26.13 O \ ATOM 158 CB ALA A 561 48.890 34.884 -7.289 1.00 24.04 C \ ATOM 159 N GLN A 562 51.765 35.054 -6.053 1.00 21.18 N \ ATOM 160 CA GLN A 562 52.755 34.604 -5.079 1.00 23.17 C \ ATOM 161 C GLN A 562 53.311 35.781 -4.267 1.00 24.22 C \ ATOM 162 O GLN A 562 53.536 35.652 -3.061 1.00 22.11 O \ ATOM 163 CB GLN A 562 53.855 33.764 -5.742 1.00 21.03 C \ ATOM 164 CG GLN A 562 53.338 32.395 -6.201 1.00 25.29 C \ ATOM 165 CD GLN A 562 54.425 31.464 -6.741 1.00 30.68 C \ ATOM 166 OE1 GLN A 562 55.287 31.876 -7.522 1.00 25.74 O \ ATOM 167 NE2 GLN A 562 54.371 30.194 -6.336 1.00 23.12 N \ ATOM 168 N GLN A 563 53.495 36.937 -4.911 1.00 23.38 N \ ATOM 169 CA GLN A 563 53.976 38.122 -4.197 1.00 22.74 C \ ATOM 170 C GLN A 563 53.036 38.513 -3.068 1.00 24.55 C \ ATOM 171 O GLN A 563 53.485 38.798 -1.960 1.00 26.99 O \ ATOM 172 CB GLN A 563 54.191 39.318 -5.130 1.00 21.78 C \ ATOM 173 CG GLN A 563 54.775 40.555 -4.426 1.00 18.84 C \ ATOM 174 CD GLN A 563 56.167 40.311 -3.825 1.00 29.11 C \ ATOM 175 OE1 GLN A 563 56.933 39.479 -4.315 1.00 31.91 O \ ATOM 176 NE2 GLN A 563 56.500 41.056 -2.772 1.00 24.10 N \ ATOM 177 N HIS A 564 51.732 38.535 -3.344 1.00 25.71 N \ ATOM 178 CA HIS A 564 50.765 38.840 -2.298 1.00 23.36 C \ ATOM 179 C HIS A 564 50.952 37.853 -1.160 1.00 23.54 C \ ATOM 180 O HIS A 564 50.974 38.247 0.004 1.00 22.56 O \ ATOM 181 CB HIS A 564 49.336 38.801 -2.837 1.00 32.21 C \ ATOM 182 CG HIS A 564 49.106 39.723 -3.999 1.00 41.46 C \ ATOM 183 ND1 HIS A 564 48.466 39.323 -5.155 1.00 39.20 N \ ATOM 184 CD2 HIS A 564 49.441 41.022 -4.187 1.00 37.96 C \ ATOM 185 CE1 HIS A 564 48.406 40.340 -5.999 1.00 46.44 C \ ATOM 186 NE2 HIS A 564 48.991 41.385 -5.434 1.00 42.14 N \ ATOM 187 N LEU A 565 51.129 36.577 -1.510 1.00 22.44 N \ ATOM 188 CA LEU A 565 51.340 35.520 -0.523 1.00 21.38 C \ ATOM 189 C LEU A 565 52.616 35.758 0.320 1.00 22.16 C \ ATOM 190 O LEU A 565 52.585 35.653 1.557 1.00 22.77 O \ ATOM 191 CB LEU A 565 51.356 34.144 -1.209 1.00 22.73 C \ ATOM 192 CG LEU A 565 51.054 32.953 -0.292 1.00 27.37 C \ ATOM 193 CD1 LEU A 565 49.675 33.109 0.348 1.00 23.01 C \ ATOM 194 CD2 LEU A 565 51.158 31.609 -1.017 1.00 27.57 C \ ATOM 195 N LEU A 566 53.721 36.103 -0.341 1.00 22.48 N \ ATOM 196 CA LEU A 566 54.965 36.464 0.348 1.00 23.38 C \ ATOM 197 C LEU A 566 54.811 37.678 1.267 1.00 22.24 C \ ATOM 198 O LEU A 566 55.437 37.756 2.331 1.00 16.58 O \ ATOM 199 CB LEU A 566 56.102 36.692 -0.656 1.00 24.41 C \ ATOM 200 CG LEU A 566 57.125 35.551 -0.698 1.00 23.19 C \ ATOM 201 CD1 LEU A 566 58.169 35.766 -1.787 1.00 26.08 C \ ATOM 202 CD2 LEU A 566 57.797 35.398 0.651 1.00 23.69 C \ ATOM 203 N GLN A 567 53.968 38.618 0.856 1.00 22.10 N \ ATOM 204 CA GLN A 567 53.645 39.768 1.689 1.00 22.12 C \ ATOM 205 C GLN A 567 52.864 39.312 2.901 1.00 20.64 C \ ATOM 206 O GLN A 567 53.013 39.874 3.983 1.00 22.25 O \ ATOM 207 CB GLN A 567 52.789 40.785 0.926 1.00 26.67 C \ ATOM 208 CG GLN A 567 53.140 40.980 -0.531 1.00 27.42 C \ ATOM 209 CD GLN A 567 54.188 42.048 -0.762 1.00 36.56 C \ ATOM 210 OE1 GLN A 567 55.314 41.959 -0.258 1.00 38.86 O \ ATOM 211 NE2 GLN A 567 53.830 43.062 -1.545 1.00 33.46 N \ ATOM 212 N LEU A 568 51.997 38.322 2.703 1.00 23.29 N \ ATOM 213 CA LEU A 568 51.204 37.775 3.797 1.00 19.66 C \ ATOM 214 C LEU A 568 52.109 37.124 4.824 1.00 23.29 C \ ATOM 215 O LEU A 568 51.920 37.335 6.028 1.00 27.99 O \ ATOM 216 CB LEU A 568 50.153 36.777 3.297 1.00 20.78 C \ ATOM 217 CG LEU A 568 48.911 37.419 2.681 1.00 18.66 C \ ATOM 218 CD1 LEU A 568 47.937 36.372 2.232 1.00 17.36 C \ ATOM 219 CD2 LEU A 568 48.255 38.353 3.676 1.00 22.48 C \ ATOM 220 N THR A 569 53.102 36.357 4.368 1.00 17.77 N \ ATOM 221 CA THR A 569 54.066 35.738 5.295 1.00 16.64 C \ ATOM 222 C THR A 569 55.023 36.750 5.950 1.00 20.41 C \ ATOM 223 O THR A 569 55.430 36.600 7.106 1.00 20.12 O \ ATOM 224 CB THR A 569 54.873 34.603 4.634 1.00 14.79 C \ ATOM 225 OG1 THR A 569 55.727 35.145 3.626 1.00 17.89 O \ ATOM 226 CG2 THR A 569 53.946 33.583 4.020 1.00 11.85 C \ ATOM 227 N VAL A 570 55.383 37.787 5.211 1.00 23.28 N \ ATOM 228 CA VAL A 570 56.240 38.823 5.760 1.00 23.93 C \ ATOM 229 C VAL A 570 55.524 39.446 6.960 1.00 21.28 C \ ATOM 230 O VAL A 570 56.137 39.724 7.985 1.00 21.47 O \ ATOM 231 CB VAL A 570 56.636 39.884 4.672 1.00 22.15 C \ ATOM 232 CG1 VAL A 570 57.122 41.170 5.299 1.00 22.62 C \ ATOM 233 CG2 VAL A 570 57.711 39.328 3.741 1.00 15.66 C \ ATOM 234 N TRP A 571 54.213 39.630 6.844 1.00 22.55 N \ ATOM 235 CA TRP A 571 53.455 40.305 7.895 1.00 20.00 C \ ATOM 236 C TRP A 571 53.298 39.442 9.151 1.00 24.18 C \ ATOM 237 O TRP A 571 53.431 39.941 10.281 1.00 24.08 O \ ATOM 238 CB TRP A 571 52.099 40.778 7.370 1.00 21.70 C \ ATOM 239 CG TRP A 571 51.276 41.514 8.395 1.00 26.64 C \ ATOM 240 CD1 TRP A 571 51.250 42.872 8.626 1.00 22.63 C \ ATOM 241 CD2 TRP A 571 50.349 40.935 9.322 1.00 21.00 C \ ATOM 242 NE1 TRP A 571 50.362 43.160 9.635 1.00 21.32 N \ ATOM 243 CE2 TRP A 571 49.801 41.990 10.081 1.00 23.71 C \ ATOM 244 CE3 TRP A 571 49.943 39.628 9.596 1.00 24.64 C \ ATOM 245 CZ2 TRP A 571 48.865 41.770 11.089 1.00 24.68 C \ ATOM 246 CZ3 TRP A 571 49.010 39.417 10.600 1.00 26.34 C \ ATOM 247 CH2 TRP A 571 48.485 40.480 11.331 1.00 25.73 C \ ATOM 248 N GLY A 572 53.034 38.151 8.955 1.00 22.66 N \ ATOM 249 CA GLY A 572 52.904 37.221 10.063 1.00 22.13 C \ ATOM 250 C GLY A 572 54.179 37.121 10.887 1.00 22.22 C \ ATOM 251 O GLY A 572 54.150 37.181 12.120 1.00 21.83 O \ ATOM 252 N ILE A 573 55.304 36.968 10.195 1.00 21.25 N \ ATOM 253 CA ILE A 573 56.612 36.948 10.838 1.00 22.54 C \ ATOM 254 C ILE A 573 56.817 38.221 11.643 1.00 22.14 C \ ATOM 255 O ILE A 573 57.352 38.183 12.738 1.00 28.14 O \ ATOM 256 CB ILE A 573 57.765 36.783 9.817 1.00 24.87 C \ ATOM 257 CG1 ILE A 573 57.757 35.368 9.213 1.00 22.22 C \ ATOM 258 CG2 ILE A 573 59.111 37.058 10.476 1.00 23.97 C \ ATOM 259 CD1 ILE A 573 58.578 35.225 7.930 1.00 16.04 C \ ATOM 260 N LYS A 574 56.380 39.348 11.103 1.00 21.39 N \ ATOM 261 CA LYS A 574 56.504 40.611 11.822 1.00 25.90 C \ ATOM 262 C LYS A 574 55.643 40.634 13.075 1.00 24.26 C \ ATOM 263 O LYS A 574 56.095 41.082 14.125 1.00 28.11 O \ ATOM 264 CB LYS A 574 56.172 41.794 10.910 1.00 23.14 C \ ATOM 265 CG LYS A 574 57.247 42.043 9.862 1.00 27.47 C \ ATOM 266 CD LYS A 574 56.850 43.112 8.848 1.00 25.20 C \ ATOM 267 CE LYS A 574 58.028 43.431 7.931 1.00 22.49 C \ ATOM 268 NZ LYS A 574 57.853 44.737 7.244 1.00 38.09 N \ ATOM 269 N GLN A 575 54.411 40.145 12.973 1.00 24.71 N \ ATOM 270 CA AGLN A 575 53.539 40.030 14.132 0.56 24.00 C \ ATOM 271 CA BGLN A 575 53.548 40.048 14.144 0.44 24.06 C \ ATOM 272 C GLN A 575 54.142 39.084 15.161 1.00 27.28 C \ ATOM 273 O GLN A 575 54.084 39.333 16.367 1.00 29.35 O \ ATOM 274 CB AGLN A 575 52.157 39.541 13.700 0.56 25.45 C \ ATOM 275 CB BGLN A 575 52.127 39.609 13.772 0.44 25.47 C \ ATOM 276 CG AGLN A 575 51.395 40.536 12.844 0.56 23.30 C \ ATOM 277 CG BGLN A 575 51.153 39.700 14.949 0.44 24.27 C \ ATOM 278 CD AGLN A 575 51.064 41.815 13.591 0.56 22.79 C \ ATOM 279 CD BGLN A 575 49.817 39.039 14.678 0.44 24.86 C \ ATOM 280 OE1AGLN A 575 49.983 41.950 14.161 0.56 22.08 O \ ATOM 281 OE1BGLN A 575 49.741 37.833 14.442 0.44 22.13 O \ ATOM 282 NE2AGLN A 575 51.994 42.759 13.589 0.56 22.19 N \ ATOM 283 NE2BGLN A 575 48.750 39.826 14.732 0.44 27.07 N \ ATOM 284 N LEU A 576 54.719 37.990 14.677 1.00 26.35 N \ ATOM 285 CA LEU A 576 55.373 37.044 15.562 1.00 25.29 C \ ATOM 286 C LEU A 576 56.605 37.690 16.194 1.00 32.46 C \ ATOM 287 O LEU A 576 56.812 37.593 17.399 1.00 31.37 O \ ATOM 288 CB LEU A 576 55.757 35.773 14.810 1.00 27.17 C \ ATOM 289 CG LEU A 576 54.588 34.875 14.396 1.00 28.45 C \ ATOM 290 CD1 LEU A 576 55.060 33.741 13.495 1.00 23.04 C \ ATOM 291 CD2 LEU A 576 53.870 34.325 15.613 1.00 30.58 C \ ATOM 292 N GLN A 577 57.412 38.365 15.382 1.00 26.82 N \ ATOM 293 CA GLN A 577 58.599 39.045 15.887 1.00 26.41 C \ ATOM 294 C GLN A 577 58.239 40.089 16.921 1.00 31.42 C \ ATOM 295 O GLN A 577 59.074 40.470 17.726 1.00 35.50 O \ ATOM 296 CB GLN A 577 59.356 39.728 14.760 1.00 29.38 C \ ATOM 297 CG GLN A 577 60.195 38.789 13.913 1.00 30.93 C \ ATOM 298 CD GLN A 577 60.750 39.493 12.696 1.00 28.74 C \ ATOM 299 OE1 GLN A 577 61.553 38.934 11.937 1.00 26.36 O \ ATOM 300 NE2 GLN A 577 60.317 40.735 12.499 1.00 23.18 N \ ATOM 301 N ALA A 578 57.001 40.563 16.883 1.00 27.15 N \ ATOM 302 CA ALA A 578 56.526 41.542 17.853 1.00 31.45 C \ ATOM 303 C ALA A 578 56.186 40.912 19.208 1.00 37.23 C \ ATOM 304 O ALA A 578 56.352 41.555 20.242 1.00 36.53 O \ ATOM 305 CB ALA A 578 55.328 42.307 17.302 1.00 36.13 C \ ATOM 306 N ARG A 579 55.715 39.664 19.194 1.00 35.18 N \ ATOM 307 CA ARG A 579 55.368 38.944 20.419 1.00 33.09 C \ ATOM 308 C ARG A 579 56.569 38.256 21.065 1.00 40.50 C \ ATOM 309 O ARG A 579 56.670 38.189 22.292 1.00 44.50 O \ ATOM 310 CB ARG A 579 54.281 37.918 20.150 1.00 33.71 C \ ATOM 311 CG ARG A 579 53.179 38.454 19.301 1.00 35.88 C \ ATOM 312 CD ARG A 579 52.740 39.789 19.833 1.00 38.07 C \ ATOM 313 NE ARG A 579 51.595 40.294 19.093 1.00 42.37 N \ ATOM 314 CZ ARG A 579 50.388 39.748 19.150 1.00 43.39 C \ ATOM 315 NH1 ARG A 579 50.185 38.675 19.902 1.00 43.58 N \ ATOM 316 NH2 ARG A 579 49.387 40.266 18.453 1.00 45.78 N \ ATOM 317 N ILE A 580 57.474 37.730 20.248 1.00 40.57 N \ ATOM 318 CA ILE A 580 58.711 37.176 20.781 1.00 40.20 C \ ATOM 319 C ILE A 580 59.630 38.285 21.282 1.00 43.29 C \ ATOM 320 O ILE A 580 59.588 38.651 22.462 1.00 56.77 O \ ATOM 321 CB ILE A 580 59.459 36.349 19.744 1.00 41.57 C \ ATOM 322 CG1 ILE A 580 58.800 34.977 19.580 1.00 40.53 C \ ATOM 323 CG2 ILE A 580 60.920 36.216 20.144 1.00 42.88 C \ ATOM 324 CD1 ILE A 580 59.626 33.989 18.748 1.00 40.26 C \ TER 325 ILE A 580 \ TER 693 LYS B 665 \ TER 1212 TYR C 681 \ TER 1607 LEU D 581 \ TER 2075 ASN E 677 \ TER 2473 LEU N 581 \ HETATM 2474 NA NA A1581 51.060 38.480 24.514 1.00 58.86 NA \ HETATM 2478 O HOH A2001 50.245 34.767 -37.772 1.00 30.83 O \ HETATM 2479 O HOH A2002 42.179 33.663 -21.808 1.00 51.87 O \ HETATM 2480 O HOH A2003 57.422 33.152 -7.515 0.33 17.46 O \ HETATM 2481 O HOH A2004 57.421 33.153 3.008 0.33 15.90 O \ HETATM 2482 O HOH A2005 51.336 36.204 13.193 1.00 27.08 O \ HETATM 2483 O HOH A2006 51.469 37.148 21.634 1.00 52.85 O \ CONECT 1898 2476 \ CONECT 2474 2483 \ CONECT 2476 1898 \ CONECT 2483 2474 \ MASTER 425 0 4 8 0 0 3 6 2510 6 4 30 \ END \ """, "2x7rchainA") cmd.hide("all") cmd.color('grey70', "2x7rchainA") cmd.show('cartoon', "2x7rchainA") cmd.center("2x7rchainA", state=0, origin=1) cmd.zoom("2x7rchainA", animate=-1) cmd.select("e2x7rA1", "c. A & i. 542-580") cmd.color("red", "e2x7rA1") cmd.disable("e2x7rA1")