cmd.read_pdbstr("""\ HEADER PROTEIN BINDING 26-NOV-08 3FDT \ TITLE CRYSTAL STRUCTURE OF THE COMPLEX OF HUMAN CHROMOBOX HOMOLOG 5 (CBX5) \ TITLE 2 WITH H3K9(ME)3 PEPTIDE \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: CHROMOBOX PROTEIN HOMOLOG 5; \ COMPND 3 CHAIN: A; \ COMPND 4 SYNONYM: HETEROCHROMATIN PROTEIN 1 HOMOLOG ALPHA, HP1 ALPHA, ANTIGEN \ COMPND 5 P25; \ COMPND 6 ENGINEERED: YES; \ COMPND 7 MOL_ID: 2; \ COMPND 8 MOLECULE: H3K9(ME)3 PEPTIDE; \ COMPND 9 CHAIN: T; \ COMPND 10 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 3 ORGANISM_COMMON: HUMAN; \ SOURCE 4 ORGANISM_TAXID: 9606; \ SOURCE 5 GENE: CBX5, HP1A; \ SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 8 MOL_ID: 2; \ SOURCE 9 SYNTHETIC: YES; \ SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; \ SOURCE 11 ORGANISM_TAXID: 32630 \ KEYWDS CHROMOBOX HOMOLOG5, CBX5, H3K9(ME)3 PEPTIDE, STRUCTURAL GENOMICS, \ KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, CENTROMERE, NUCLEUS, \ KEYWDS 3 PHOSPHOPROTEIN, CHROMOSOMAL PROTEIN, DNA-BINDING, NUCLEOSOME CORE, \ KEYWDS 4 PROTEIN BINDING \ EXPDTA X-RAY DIFFRACTION \ AUTHOR M.F.AMAYA,M.RAVICHANDRAN,P.LOPPNAU,I.KOZIERADZKI,A.M.EDWARDS, \ AUTHOR 2 C.H.ARROWSMITH,J.WEIGELT,C.BOUNTRA,A.BOCHKAREV,J.MIN,H.OUYANG, \ AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) \ REVDAT 5 06-SEP-23 3FDT 1 SEQADV LINK \ REVDAT 4 01-NOV-17 3FDT 1 SOURCE REMARK \ REVDAT 3 06-APR-11 3FDT 1 JRNL \ REVDAT 2 25-AUG-09 3FDT 1 REMARK \ REVDAT 1 13-JAN-09 3FDT 0 \ JRNL AUTH L.KAUSTOV,H.OUYANG,M.AMAYA,A.LEMAK,N.NADY,S.DUAN,G.A.WASNEY, \ JRNL AUTH 2 Z.LI,M.VEDADI,M.SCHAPIRA,J.MIN,C.H.ARROWSMITH \ JRNL TITL RECOGNITION AND SPECIFICITY DETERMINANTS OF THE HUMAN CBX \ JRNL TITL 2 CHROMODOMAINS. \ JRNL REF J.BIOL.CHEM. V. 286 521 2011 \ JRNL REFN ISSN 0021-9258 \ JRNL PMID 21047797 \ JRNL DOI 10.1074/JBC.M110.191411 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.00 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.2.0019 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.71 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL \ REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 \ REMARK 3 NUMBER OF REFLECTIONS : 5310 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 \ REMARK 3 R VALUE (WORKING SET) : 0.197 \ REMARK 3 FREE R VALUE : 0.257 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 \ REMARK 3 FREE R VALUE TEST SET COUNT : 253 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 362 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.00 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 \ REMARK 3 BIN FREE R VALUE SET COUNT : 22 \ REMARK 3 BIN FREE R VALUE : 0.2630 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 495 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 0 \ REMARK 3 SOLVENT ATOMS : 34 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.04 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 0.66000 \ REMARK 3 B22 (A**2) : 0.66000 \ REMARK 3 B33 (A**2) : -1.32000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 0.00000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 0.163 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.100 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.651 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 504 ; 0.017 ; 0.022 \ REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 681 ; 1.883 ; 1.968 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 59 ; 7.070 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 24 ;25.555 ;24.583 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 87 ;14.443 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;22.139 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 75 ; 0.119 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 371 ; 0.006 ; 0.020 \ REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 196 ; 0.210 ; 0.200 \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 350 ; 0.312 ; 0.200 \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 17 ; 0.148 ; 0.200 \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 34 ; 0.185 ; 0.200 \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.288 ; 0.200 \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 308 ; 1.053 ; 1.500 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 484 ; 1.961 ; 2.000 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 224 ; 3.395 ; 3.000 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 197 ; 5.900 ; 4.500 \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : MASK \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS \ REMARK 4 \ REMARK 4 3FDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-DEC-08. \ REMARK 100 THE DEPOSITION ID IS D_1000050465. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 14-NOV-08 \ REMARK 200 TEMPERATURE (KELVIN) : 200 \ REMARK 200 PH : 8.5 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : APS \ REMARK 200 BEAMLINE : 23-ID-B \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.97948 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : NULL \ REMARK 200 DETECTOR MANUFACTURER : NULL \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO \ REMARK 200 DATA SCALING SOFTWARE : SCALEPACK \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5592 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 \ REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 \ REMARK 200 DATA REDUNDANCY : 12.10 \ REMARK 200 R MERGE (I) : 0.08600 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : NULL \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 \ REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 \ REMARK 200 R MERGE FOR SHELL (I) : 0.38100 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: NULL \ REMARK 200 STARTING MODEL: 3F2U \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 42.92 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 400, 0.2M NA CL, 0.1M TRIS (PH \ REMARK 280 8.5), VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,-Y,Z+1/2 \ REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 \ REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 \ REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 \ REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 \ REMARK 290 7555 Y,X,-Z \ REMARK 290 8555 -Y,-X,-Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 14.20650 \ REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.56150 \ REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.56150 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 7.10325 \ REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.56150 \ REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.56150 \ REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 21.30975 \ REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.56150 \ REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.56150 \ REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 7.10325 \ REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.56150 \ REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.56150 \ REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 21.30975 \ REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 14.20650 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1150 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 4330 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 375 \ REMARK 375 SPECIAL POSITION \ REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS \ REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL \ REMARK 375 POSITIONS. \ REMARK 375 \ REMARK 375 ATOM RES CSSEQI \ REMARK 375 HOH A 75 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH A 78 LIES ON A SPECIAL POSITION. \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 GLY A 1 \ REMARK 465 LYS A 53 \ REMARK 465 TYR A 54 \ REMARK 465 LYS A 55 \ REMARK 465 LYS A 56 \ REMARK 465 MET A 57 \ REMARK 465 LYS A 58 \ REMARK 465 GLU A 59 \ REMARK 465 THR T 20 \ REMARK 465 GLY T 21 \ REMARK 465 GLY T 22 \ REMARK 465 LYS T 23 \ REMARK 465 ALA T 24 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 GLU A 3 CG CD OE1 OE2 \ REMARK 470 LYS A 8 CG CD CE NZ \ REMARK 470 SER A 29 OG \ REMARK 470 GLU A 49 CG CD OE1 OE2 \ REMARK 470 LYS T 13 CG CD CE NZ \ REMARK 470 ARG T 17 CG CD NE CZ NH1 NH2 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC \ REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 \ REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A \ REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 \ REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE \ REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. \ REMARK 500 \ REMARK 500 DISTANCE CUTOFF: \ REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS \ REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE \ REMARK 500 O HOH A 89 O HOH A 91 7555 2.12 \ REMARK 500 O HOH A 89 O HOH A 89 7555 2.13 \ REMARK 500 \ REMARK 500 REMARK: NULL \ DBREF 3FDT A 2 59 UNP P45973 CBX5_HUMAN 18 75 \ DBREF 3FDT T 10 24 UNP Q3BDD9 Q3BDD9_9INSE 2 16 \ SEQADV 3FDT GLY A 1 UNP P45973 INSERTION \ SEQRES 1 A 59 GLY GLU GLU TYR VAL VAL GLU LYS VAL LEU ASP ARG ARG \ SEQRES 2 A 59 VAL VAL LYS GLY GLN VAL GLU TYR LEU LEU LYS TRP LYS \ SEQRES 3 A 59 GLY PHE SER GLU GLU HIS ASN THR TRP GLU PRO GLU LYS \ SEQRES 4 A 59 ASN LEU ASP CYS PRO GLU LEU ILE SER GLU PHE MET LYS \ SEQRES 5 A 59 LYS TYR LYS LYS MET LYS GLU \ SEQRES 1 T 15 ALA ARG THR LYS GLN THR ALA ARG M3L SER THR GLY GLY \ SEQRES 2 T 15 LYS ALA \ MODRES 3FDT M3L T 18 LYS N-TRIMETHYLLYSINE \ HET M3L T 18 12 \ HETNAM M3L N-TRIMETHYLLYSINE \ FORMUL 2 M3L C9 H21 N2 O2 1+ \ FORMUL 3 HOH *34(H2 O) \ HELIX 1 1 SER A 29 ASN A 33 5 5 \ HELIX 2 2 CYS A 43 LYS A 52 1 10 \ SHEET 1 A 5 THR A 34 PRO A 37 0 \ SHEET 2 A 5 GLN A 18 TRP A 25 -1 N LEU A 23 O THR A 34 \ SHEET 3 A 5 GLU A 3 VAL A 15 -1 N LEU A 10 O LEU A 22 \ SHEET 4 A 5 THR T 15 ARG T 17 -1 O ALA T 16 N TYR A 4 \ SHEET 5 A 5 LEU A 41 ASP A 42 -1 N ASP A 42 O THR T 15 \ LINK C ARG T 17 N M3L T 18 1555 1555 1.32 \ LINK C M3L T 18 N SER T 19 1555 1555 1.33 \ CRYST1 73.123 73.123 28.413 90.00 90.00 90.00 P 41 21 2 8 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.013676 0.000000 0.000000 0.00000 \ SCALE2 0.000000 0.013676 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.035195 0.00000 \ ATOM 1 N GLU A 2 19.327 29.247 10.402 1.00 42.71 N \ ATOM 2 CA GLU A 2 18.651 28.230 9.528 1.00 41.06 C \ ATOM 3 C GLU A 2 17.726 27.226 10.196 1.00 38.63 C \ ATOM 4 O GLU A 2 16.842 26.733 9.516 1.00 36.78 O \ ATOM 5 CB GLU A 2 19.633 27.442 8.741 1.00 42.23 C \ ATOM 6 CG GLU A 2 19.183 27.338 7.368 1.00 46.13 C \ ATOM 7 CD GLU A 2 20.033 26.390 6.591 1.00 55.02 C \ ATOM 8 OE1 GLU A 2 20.437 25.341 7.169 1.00 59.06 O \ ATOM 9 OE2 GLU A 2 20.291 26.699 5.397 1.00 58.85 O \ ATOM 10 N GLU A 3 17.942 26.896 11.475 1.00 35.83 N \ ATOM 11 CA GLU A 3 16.909 26.181 12.243 1.00 34.67 C \ ATOM 12 C GLU A 3 15.963 27.207 12.905 1.00 33.66 C \ ATOM 13 O GLU A 3 16.413 28.252 13.393 1.00 34.26 O \ ATOM 14 CB GLU A 3 17.531 25.222 13.268 1.00 34.22 C \ ATOM 15 N TYR A 4 14.658 26.957 12.873 1.00 31.92 N \ ATOM 16 CA TYR A 4 13.687 27.883 13.435 1.00 30.50 C \ ATOM 17 C TYR A 4 12.585 27.093 14.111 1.00 29.86 C \ ATOM 18 O TYR A 4 12.339 25.950 13.773 1.00 28.85 O \ ATOM 19 CB TYR A 4 13.038 28.766 12.380 1.00 30.51 C \ ATOM 20 CG TYR A 4 13.983 29.627 11.574 1.00 31.14 C \ ATOM 21 CD1 TYR A 4 14.172 30.959 11.896 1.00 29.92 C \ ATOM 22 CD2 TYR A 4 14.655 29.103 10.455 1.00 29.29 C \ ATOM 23 CE1 TYR A 4 15.032 31.772 11.140 1.00 32.81 C \ ATOM 24 CE2 TYR A 4 15.502 29.889 9.684 1.00 31.10 C \ ATOM 25 CZ TYR A 4 15.688 31.215 10.032 1.00 32.65 C \ ATOM 26 OH TYR A 4 16.509 32.010 9.274 1.00 33.06 O \ ATOM 27 N VAL A 5 11.938 27.709 15.091 1.00 29.32 N \ ATOM 28 CA VAL A 5 10.814 27.103 15.765 1.00 28.59 C \ ATOM 29 C VAL A 5 9.612 27.060 14.816 1.00 28.23 C \ ATOM 30 O VAL A 5 9.279 28.054 14.138 1.00 27.28 O \ ATOM 31 CB VAL A 5 10.415 27.907 17.053 1.00 29.34 C \ ATOM 32 CG1 VAL A 5 9.253 27.231 17.724 1.00 28.67 C \ ATOM 33 CG2 VAL A 5 11.590 27.975 18.004 1.00 28.76 C \ ATOM 34 N VAL A 6 8.968 25.894 14.785 1.00 28.09 N \ ATOM 35 CA VAL A 6 7.786 25.671 13.971 1.00 26.45 C \ ATOM 36 C VAL A 6 6.533 25.866 14.822 1.00 27.68 C \ ATOM 37 O VAL A 6 6.437 25.408 15.977 1.00 27.59 O \ ATOM 38 CB VAL A 6 7.793 24.262 13.389 1.00 25.63 C \ ATOM 39 CG1 VAL A 6 6.595 24.061 12.499 1.00 23.68 C \ ATOM 40 CG2 VAL A 6 9.079 24.012 12.634 1.00 25.53 C \ ATOM 41 N GLU A 7 5.551 26.518 14.231 1.00 28.98 N \ ATOM 42 CA GLU A 7 4.254 26.695 14.886 1.00 30.55 C \ ATOM 43 C GLU A 7 3.211 25.624 14.560 1.00 29.51 C \ ATOM 44 O GLU A 7 2.516 25.130 15.462 1.00 29.46 O \ ATOM 45 CB GLU A 7 3.703 28.027 14.441 1.00 30.33 C \ ATOM 46 CG GLU A 7 2.465 28.382 15.133 1.00 37.92 C \ ATOM 47 CD GLU A 7 2.045 29.780 14.760 1.00 46.03 C \ ATOM 48 OE1 GLU A 7 2.926 30.625 14.437 1.00 51.14 O \ ATOM 49 OE2 GLU A 7 0.820 30.027 14.770 1.00 52.97 O \ ATOM 50 N LYS A 8 3.074 25.288 13.275 1.00 28.05 N \ ATOM 51 CA LYS A 8 2.084 24.294 12.841 1.00 27.11 C \ ATOM 52 C LYS A 8 2.531 23.679 11.545 1.00 26.45 C \ ATOM 53 O LYS A 8 3.238 24.311 10.756 1.00 24.77 O \ ATOM 54 CB LYS A 8 0.705 24.939 12.646 1.00 28.00 C \ ATOM 55 N VAL A 9 2.160 22.429 11.339 1.00 25.97 N \ ATOM 56 CA VAL A 9 2.349 21.768 10.027 1.00 25.36 C \ ATOM 57 C VAL A 9 0.998 21.891 9.362 1.00 26.53 C \ ATOM 58 O VAL A 9 0.006 21.473 9.946 1.00 25.83 O \ ATOM 59 CB VAL A 9 2.735 20.261 10.154 1.00 26.24 C \ ATOM 60 CG1 VAL A 9 2.627 19.524 8.786 1.00 25.55 C \ ATOM 61 CG2 VAL A 9 4.158 20.102 10.713 1.00 26.35 C \ ATOM 62 N LEU A 10 0.961 22.494 8.173 1.00 26.06 N \ ATOM 63 CA LEU A 10 -0.279 22.893 7.522 1.00 27.28 C \ ATOM 64 C LEU A 10 -0.679 21.947 6.422 1.00 27.17 C \ ATOM 65 O LEU A 10 -1.851 21.812 6.151 1.00 27.62 O \ ATOM 66 CB LEU A 10 -0.123 24.294 6.902 1.00 26.61 C \ ATOM 67 CG LEU A 10 0.138 25.505 7.801 1.00 28.95 C \ ATOM 68 CD1 LEU A 10 0.569 26.677 7.000 1.00 30.34 C \ ATOM 69 CD2 LEU A 10 -1.087 25.889 8.551 1.00 31.18 C \ ATOM 70 N ASP A 11 0.295 21.322 5.750 1.00 26.39 N \ ATOM 71 CA ASP A 11 -0.022 20.510 4.596 1.00 27.75 C \ ATOM 72 C ASP A 11 1.116 19.571 4.344 1.00 26.98 C \ ATOM 73 O ASP A 11 2.196 19.742 4.872 1.00 27.05 O \ ATOM 74 CB ASP A 11 -0.268 21.413 3.379 1.00 26.50 C \ ATOM 75 CG ASP A 11 -1.268 20.826 2.391 1.00 32.39 C \ ATOM 76 OD1 ASP A 11 -1.752 19.676 2.585 1.00 32.08 O \ ATOM 77 OD2 ASP A 11 -1.562 21.535 1.382 1.00 37.97 O \ ATOM 78 N ARG A 12 0.860 18.576 3.529 1.00 27.48 N \ ATOM 79 CA ARG A 12 1.863 17.609 3.203 1.00 29.00 C \ ATOM 80 C ARG A 12 1.762 17.266 1.726 1.00 29.39 C \ ATOM 81 O ARG A 12 0.648 17.193 1.176 1.00 29.22 O \ ATOM 82 CB ARG A 12 1.518 16.385 3.990 1.00 29.21 C \ ATOM 83 CG ARG A 12 2.378 15.194 3.791 1.00 33.39 C \ ATOM 84 CD ARG A 12 1.688 14.077 4.514 1.00 37.15 C \ ATOM 85 NE ARG A 12 2.585 12.959 4.674 1.00 43.84 N \ ATOM 86 CZ ARG A 12 2.701 11.994 3.785 1.00 47.45 C \ ATOM 87 NH1 ARG A 12 1.971 12.032 2.674 1.00 48.40 N \ ATOM 88 NH2 ARG A 12 3.557 11.002 4.012 1.00 51.22 N \ ATOM 89 N ARG A 13 2.902 17.023 1.088 1.00 28.98 N \ ATOM 90 CA ARG A 13 2.918 16.539 -0.311 1.00 29.32 C \ ATOM 91 C ARG A 13 4.039 15.535 -0.541 1.00 30.21 C \ ATOM 92 O ARG A 13 4.963 15.433 0.275 1.00 29.92 O \ ATOM 93 CB ARG A 13 3.060 17.700 -1.273 1.00 28.54 C \ ATOM 94 CG ARG A 13 4.406 18.343 -1.214 1.00 26.84 C \ ATOM 95 CD ARG A 13 4.404 19.586 -2.062 1.00 28.52 C \ ATOM 96 NE ARG A 13 5.760 20.119 -2.135 1.00 28.97 N \ ATOM 97 CZ ARG A 13 6.088 21.288 -2.691 1.00 31.93 C \ ATOM 98 NH1 ARG A 13 5.153 22.051 -3.232 1.00 33.62 N \ ATOM 99 NH2 ARG A 13 7.353 21.697 -2.716 1.00 33.50 N \ ATOM 100 N VAL A 14 3.947 14.779 -1.633 1.00 30.23 N \ ATOM 101 CA VAL A 14 5.025 13.873 -2.018 1.00 31.31 C \ ATOM 102 C VAL A 14 5.454 14.322 -3.414 1.00 31.46 C \ ATOM 103 O VAL A 14 4.638 14.410 -4.317 1.00 32.10 O \ ATOM 104 CB VAL A 14 4.592 12.408 -1.976 1.00 31.89 C \ ATOM 105 CG1 VAL A 14 5.751 11.513 -2.341 1.00 33.79 C \ ATOM 106 CG2 VAL A 14 4.077 12.031 -0.549 1.00 34.60 C \ ATOM 107 N VAL A 15 6.713 14.698 -3.549 1.00 29.99 N \ ATOM 108 CA VAL A 15 7.221 15.258 -4.780 1.00 30.85 C \ ATOM 109 C VAL A 15 8.629 14.693 -5.000 1.00 29.32 C \ ATOM 110 O VAL A 15 9.456 14.740 -4.111 1.00 28.13 O \ ATOM 111 CB VAL A 15 7.275 16.795 -4.726 1.00 30.33 C \ ATOM 112 CG1 VAL A 15 8.043 17.316 -5.924 1.00 32.68 C \ ATOM 113 CG2 VAL A 15 5.899 17.365 -4.748 1.00 33.74 C \ ATOM 114 N LYS A 16 8.872 14.126 -6.185 1.00 29.24 N \ ATOM 115 CA LYS A 16 10.214 13.691 -6.587 1.00 28.92 C \ ATOM 116 C LYS A 16 10.786 12.727 -5.560 1.00 29.05 C \ ATOM 117 O LYS A 16 11.975 12.797 -5.230 1.00 30.25 O \ ATOM 118 CB LYS A 16 11.142 14.896 -6.752 1.00 28.64 C \ ATOM 119 CG LYS A 16 10.841 15.746 -7.969 1.00 31.17 C \ ATOM 120 CD LYS A 16 11.895 16.792 -8.185 1.00 32.15 C \ ATOM 121 CE LYS A 16 11.411 17.744 -9.240 1.00 35.15 C \ ATOM 122 NZ LYS A 16 12.362 18.848 -9.575 1.00 35.44 N \ ATOM 123 N GLY A 17 9.931 11.864 -5.029 1.00 28.11 N \ ATOM 124 CA GLY A 17 10.400 10.811 -4.162 1.00 28.91 C \ ATOM 125 C GLY A 17 10.600 11.247 -2.711 1.00 28.75 C \ ATOM 126 O GLY A 17 11.134 10.479 -1.907 1.00 28.74 O \ ATOM 127 N GLN A 18 10.167 12.452 -2.364 1.00 27.94 N \ ATOM 128 CA GLN A 18 10.291 12.863 -0.964 1.00 27.93 C \ ATOM 129 C GLN A 18 9.015 13.447 -0.413 1.00 27.63 C \ ATOM 130 O GLN A 18 8.273 14.125 -1.141 1.00 27.69 O \ ATOM 131 CB GLN A 18 11.467 13.820 -0.784 1.00 27.26 C \ ATOM 132 CG GLN A 18 11.379 15.145 -1.465 1.00 26.99 C \ ATOM 133 CD GLN A 18 12.701 15.889 -1.364 1.00 30.01 C \ ATOM 134 OE1 GLN A 18 13.742 15.275 -1.606 1.00 31.48 O \ ATOM 135 NE2 GLN A 18 12.677 17.215 -1.018 1.00 27.06 N \ ATOM 136 N VAL A 19 8.745 13.159 0.859 1.00 26.46 N \ ATOM 137 CA VAL A 19 7.640 13.812 1.589 1.00 26.35 C \ ATOM 138 C VAL A 19 8.060 15.176 2.064 1.00 25.72 C \ ATOM 139 O VAL A 19 9.155 15.345 2.621 1.00 24.55 O \ ATOM 140 CB VAL A 19 7.170 12.962 2.805 1.00 27.19 C \ ATOM 141 CG1 VAL A 19 5.843 13.510 3.383 1.00 25.75 C \ ATOM 142 CG2 VAL A 19 7.018 11.479 2.369 1.00 26.82 C \ ATOM 143 N GLU A 20 7.186 16.162 1.848 1.00 25.00 N \ ATOM 144 CA GLU A 20 7.469 17.544 2.205 1.00 24.65 C \ ATOM 145 C GLU A 20 6.281 18.033 2.978 1.00 24.45 C \ ATOM 146 O GLU A 20 5.180 17.504 2.797 1.00 25.34 O \ ATOM 147 CB GLU A 20 7.653 18.419 0.961 1.00 25.21 C \ ATOM 148 CG GLU A 20 8.823 18.017 0.107 1.00 27.34 C \ ATOM 149 CD GLU A 20 9.183 19.024 -0.958 1.00 33.48 C \ ATOM 150 OE1 GLU A 20 8.315 19.825 -1.372 1.00 38.03 O \ ATOM 151 OE2 GLU A 20 10.358 19.018 -1.389 1.00 36.72 O \ ATOM 152 N TYR A 21 6.507 19.001 3.855 1.00 24.87 N \ ATOM 153 CA TYR A 21 5.482 19.521 4.748 1.00 25.03 C \ ATOM 154 C TYR A 21 5.497 20.993 4.642 1.00 23.90 C \ ATOM 155 O TYR A 21 6.568 21.612 4.600 1.00 24.15 O \ ATOM 156 CB TYR A 21 5.783 19.154 6.226 1.00 26.09 C \ ATOM 157 CG TYR A 21 5.649 17.696 6.467 1.00 26.59 C \ ATOM 158 CD1 TYR A 21 4.394 17.126 6.720 1.00 28.06 C \ ATOM 159 CD2 TYR A 21 6.750 16.878 6.406 1.00 27.33 C \ ATOM 160 CE1 TYR A 21 4.272 15.796 6.929 1.00 28.67 C \ ATOM 161 CE2 TYR A 21 6.627 15.521 6.609 1.00 26.84 C \ ATOM 162 CZ TYR A 21 5.408 15.005 6.841 1.00 27.37 C \ ATOM 163 OH TYR A 21 5.314 13.659 7.038 1.00 33.63 O \ ATOM 164 N LEU A 22 4.312 21.570 4.659 1.00 24.00 N \ ATOM 165 CA LEU A 22 4.207 23.013 4.617 1.00 24.29 C \ ATOM 166 C LEU A 22 4.192 23.532 6.034 1.00 24.16 C \ ATOM 167 O LEU A 22 3.289 23.200 6.792 1.00 24.54 O \ ATOM 168 CB LEU A 22 2.936 23.471 3.850 1.00 24.56 C \ ATOM 169 CG LEU A 22 2.686 24.996 3.741 1.00 26.11 C \ ATOM 170 CD1 LEU A 22 3.814 25.662 2.987 1.00 26.29 C \ ATOM 171 CD2 LEU A 22 1.355 25.377 3.027 1.00 25.95 C \ ATOM 172 N LEU A 23 5.172 24.364 6.381 1.00 24.09 N \ ATOM 173 CA LEU A 23 5.362 24.782 7.759 1.00 26.12 C \ ATOM 174 C LEU A 23 5.001 26.248 7.946 1.00 27.75 C \ ATOM 175 O LEU A 23 5.381 27.094 7.133 1.00 28.59 O \ ATOM 176 CB LEU A 23 6.834 24.592 8.177 1.00 25.66 C \ ATOM 177 CG LEU A 23 7.406 23.165 8.054 1.00 24.33 C \ ATOM 178 CD1 LEU A 23 8.868 23.068 8.628 1.00 24.69 C \ ATOM 179 CD2 LEU A 23 6.475 22.093 8.647 1.00 22.84 C \ ATOM 180 N LYS A 24 4.293 26.522 9.035 1.00 28.12 N \ ATOM 181 CA LYS A 24 4.046 27.863 9.515 1.00 28.50 C \ ATOM 182 C LYS A 24 5.059 28.089 10.624 1.00 28.44 C \ ATOM 183 O LYS A 24 5.059 27.391 11.639 1.00 28.03 O \ ATOM 184 CB LYS A 24 2.605 27.975 10.060 1.00 28.75 C \ ATOM 185 CG LYS A 24 2.349 29.211 10.936 1.00 30.72 C \ ATOM 186 CD LYS A 24 2.208 30.459 10.126 1.00 33.31 C \ ATOM 187 CE LYS A 24 1.812 31.706 11.003 1.00 33.57 C \ ATOM 188 NZ LYS A 24 2.723 31.863 12.204 1.00 37.45 N \ ATOM 189 N TRP A 25 5.977 29.016 10.403 1.00 28.82 N \ ATOM 190 CA TRP A 25 7.050 29.232 11.373 1.00 29.99 C \ ATOM 191 C TRP A 25 6.618 30.129 12.530 1.00 31.17 C \ ATOM 192 O TRP A 25 5.918 31.141 12.317 1.00 32.01 O \ ATOM 193 CB TRP A 25 8.256 29.812 10.671 1.00 28.96 C \ ATOM 194 CG TRP A 25 8.733 28.968 9.521 1.00 29.16 C \ ATOM 195 CD1 TRP A 25 8.389 29.106 8.225 1.00 28.41 C \ ATOM 196 CD2 TRP A 25 9.688 27.900 9.583 1.00 26.75 C \ ATOM 197 NE1 TRP A 25 9.033 28.154 7.467 1.00 27.78 N \ ATOM 198 CE2 TRP A 25 9.867 27.427 8.275 1.00 27.74 C \ ATOM 199 CE3 TRP A 25 10.405 27.302 10.620 1.00 26.69 C \ ATOM 200 CZ2 TRP A 25 10.712 26.357 7.972 1.00 27.04 C \ ATOM 201 CZ3 TRP A 25 11.267 26.264 10.327 1.00 27.15 C \ ATOM 202 CH2 TRP A 25 11.432 25.809 9.003 1.00 27.43 C \ ATOM 203 N LYS A 26 7.014 29.762 13.749 1.00 32.58 N \ ATOM 204 CA LYS A 26 6.561 30.520 14.941 1.00 33.25 C \ ATOM 205 C LYS A 26 7.093 31.955 14.996 1.00 33.27 C \ ATOM 206 O LYS A 26 8.312 32.200 14.846 1.00 33.00 O \ ATOM 207 CB LYS A 26 6.877 29.768 16.239 1.00 33.68 C \ ATOM 208 CG LYS A 26 6.255 30.443 17.482 1.00 37.34 C \ ATOM 209 CD LYS A 26 5.969 29.446 18.585 1.00 43.80 C \ ATOM 210 CE LYS A 26 5.820 30.181 19.902 1.00 48.88 C \ ATOM 211 NZ LYS A 26 5.530 29.227 21.013 1.00 54.11 N \ ATOM 212 N GLY A 27 6.167 32.892 15.183 1.00 33.41 N \ ATOM 213 CA GLY A 27 6.462 34.317 15.158 1.00 34.17 C \ ATOM 214 C GLY A 27 6.580 34.934 13.767 1.00 34.14 C \ ATOM 215 O GLY A 27 6.710 36.140 13.650 1.00 35.00 O \ ATOM 216 N PHE A 28 6.535 34.136 12.708 1.00 33.56 N \ ATOM 217 CA PHE A 28 6.630 34.693 11.333 1.00 33.14 C \ ATOM 218 C PHE A 28 5.242 34.722 10.691 1.00 34.37 C \ ATOM 219 O PHE A 28 4.438 33.832 10.956 1.00 35.51 O \ ATOM 220 CB PHE A 28 7.494 33.798 10.448 1.00 31.04 C \ ATOM 221 CG PHE A 28 8.963 33.832 10.757 1.00 30.05 C \ ATOM 222 CD1 PHE A 28 9.827 34.551 9.959 1.00 30.79 C \ ATOM 223 CD2 PHE A 28 9.483 33.113 11.815 1.00 26.87 C \ ATOM 224 CE1 PHE A 28 11.201 34.571 10.230 1.00 28.10 C \ ATOM 225 CE2 PHE A 28 10.840 33.110 12.082 1.00 28.97 C \ ATOM 226 CZ PHE A 28 11.698 33.857 11.289 1.00 27.46 C \ ATOM 227 N SER A 29 4.965 35.709 9.830 1.00 35.28 N \ ATOM 228 CA SER A 29 3.679 35.775 9.086 1.00 35.44 C \ ATOM 229 C SER A 29 3.543 34.558 8.188 1.00 35.82 C \ ATOM 230 O SER A 29 4.535 33.903 7.889 1.00 34.27 O \ ATOM 231 CB SER A 29 3.623 37.021 8.183 1.00 36.28 C \ ATOM 232 N GLU A 30 2.316 34.278 7.743 1.00 35.83 N \ ATOM 233 CA GLU A 30 2.049 33.180 6.819 1.00 37.16 C \ ATOM 234 C GLU A 30 2.707 33.352 5.440 1.00 36.77 C \ ATOM 235 O GLU A 30 2.869 32.379 4.689 1.00 35.95 O \ ATOM 236 CB GLU A 30 0.547 33.026 6.607 1.00 37.61 C \ ATOM 237 CG GLU A 30 0.005 34.007 5.579 1.00 42.75 C \ ATOM 238 CD GLU A 30 -1.400 34.479 5.905 1.00 50.58 C \ ATOM 239 OE1 GLU A 30 -1.979 33.917 6.870 1.00 54.61 O \ ATOM 240 OE2 GLU A 30 -1.929 35.401 5.207 1.00 53.76 O \ ATOM 241 N GLU A 31 3.077 34.577 5.087 1.00 36.75 N \ ATOM 242 CA GLU A 31 3.769 34.794 3.829 1.00 37.33 C \ ATOM 243 C GLU A 31 5.228 34.253 3.879 1.00 36.10 C \ ATOM 244 O GLU A 31 5.857 34.098 2.852 1.00 35.87 O \ ATOM 245 CB GLU A 31 3.652 36.263 3.371 1.00 39.41 C \ ATOM 246 CG GLU A 31 2.155 36.851 3.319 1.00 45.86 C \ ATOM 247 CD GLU A 31 1.205 36.258 2.205 1.00 55.62 C \ ATOM 248 OE1 GLU A 31 1.698 35.881 1.106 1.00 61.03 O \ ATOM 249 OE2 GLU A 31 -0.057 36.182 2.411 1.00 58.52 O \ ATOM 250 N HIS A 32 5.731 33.900 5.073 1.00 35.18 N \ ATOM 251 CA HIS A 32 7.012 33.203 5.202 1.00 33.81 C \ ATOM 252 C HIS A 32 6.937 31.679 5.301 1.00 32.00 C \ ATOM 253 O HIS A 32 7.965 31.060 5.559 1.00 31.18 O \ ATOM 254 CB HIS A 32 7.756 33.654 6.445 1.00 35.08 C \ ATOM 255 CG HIS A 32 8.118 35.097 6.451 1.00 39.56 C \ ATOM 256 ND1 HIS A 32 7.182 36.093 6.638 1.00 44.60 N \ ATOM 257 CD2 HIS A 32 9.314 35.714 6.317 1.00 42.59 C \ ATOM 258 CE1 HIS A 32 7.791 37.266 6.603 1.00 46.83 C \ ATOM 259 NE2 HIS A 32 9.083 37.065 6.408 1.00 46.15 N \ ATOM 260 N ASN A 33 5.753 31.076 5.126 1.00 30.33 N \ ATOM 261 CA ASN A 33 5.622 29.599 5.102 1.00 28.68 C \ ATOM 262 C ASN A 33 6.515 28.971 4.040 1.00 29.41 C \ ATOM 263 O ASN A 33 6.660 29.539 2.947 1.00 29.42 O \ ATOM 264 CB ASN A 33 4.188 29.201 4.730 1.00 28.98 C \ ATOM 265 CG ASN A 33 3.189 29.606 5.740 1.00 28.32 C \ ATOM 266 OD1 ASN A 33 3.524 30.063 6.831 1.00 29.16 O \ ATOM 267 ND2 ASN A 33 1.926 29.442 5.392 1.00 31.03 N \ ATOM 268 N THR A 34 7.079 27.785 4.291 1.00 28.12 N \ ATOM 269 CA THR A 34 7.855 27.124 3.251 1.00 27.35 C \ ATOM 270 C THR A 34 7.569 25.631 3.318 1.00 26.80 C \ ATOM 271 O THR A 34 7.243 25.114 4.400 1.00 26.30 O \ ATOM 272 CB THR A 34 9.393 27.358 3.423 1.00 28.28 C \ ATOM 273 OG1 THR A 34 9.785 26.914 4.709 1.00 29.53 O \ ATOM 274 CG2 THR A 34 9.785 28.812 3.302 1.00 30.12 C \ ATOM 275 N TRP A 35 7.694 24.942 2.192 1.00 24.61 N \ ATOM 276 CA TRP A 35 7.678 23.475 2.147 1.00 24.03 C \ ATOM 277 C TRP A 35 9.058 22.998 2.580 1.00 23.81 C \ ATOM 278 O TRP A 35 10.028 23.594 2.168 1.00 23.36 O \ ATOM 279 CB TRP A 35 7.413 23.011 0.714 1.00 23.74 C \ ATOM 280 CG TRP A 35 5.960 23.243 0.262 1.00 25.32 C \ ATOM 281 CD1 TRP A 35 5.472 24.301 -0.432 1.00 25.56 C \ ATOM 282 CD2 TRP A 35 4.848 22.392 0.544 1.00 23.59 C \ ATOM 283 NE1 TRP A 35 4.106 24.141 -0.636 1.00 26.44 N \ ATOM 284 CE2 TRP A 35 3.713 22.978 -0.026 1.00 27.09 C \ ATOM 285 CE3 TRP A 35 4.714 21.170 1.211 1.00 25.21 C \ ATOM 286 CZ2 TRP A 35 2.451 22.393 0.063 1.00 26.86 C \ ATOM 287 CZ3 TRP A 35 3.461 20.602 1.311 1.00 25.82 C \ ATOM 288 CH2 TRP A 35 2.347 21.198 0.717 1.00 25.79 C \ ATOM 289 N GLU A 36 9.160 21.917 3.344 1.00 22.80 N \ ATOM 290 CA GLU A 36 10.470 21.433 3.762 1.00 22.78 C \ ATOM 291 C GLU A 36 10.410 19.931 3.699 1.00 23.84 C \ ATOM 292 O GLU A 36 9.371 19.315 4.031 1.00 24.61 O \ ATOM 293 CB GLU A 36 10.823 21.881 5.196 1.00 22.91 C \ ATOM 294 CG GLU A 36 10.999 23.411 5.423 1.00 24.49 C \ ATOM 295 CD GLU A 36 12.043 24.039 4.535 1.00 27.87 C \ ATOM 296 OE1 GLU A 36 12.925 23.314 4.031 1.00 29.65 O \ ATOM 297 OE2 GLU A 36 11.986 25.271 4.327 1.00 31.11 O \ ATOM 298 N PRO A 37 11.495 19.291 3.243 1.00 23.79 N \ ATOM 299 CA PRO A 37 11.358 17.853 3.207 1.00 24.28 C \ ATOM 300 C PRO A 37 11.337 17.310 4.629 1.00 25.19 C \ ATOM 301 O PRO A 37 11.797 17.990 5.565 1.00 25.34 O \ ATOM 302 CB PRO A 37 12.631 17.415 2.477 1.00 24.16 C \ ATOM 303 CG PRO A 37 13.610 18.469 2.866 1.00 24.38 C \ ATOM 304 CD PRO A 37 12.818 19.731 2.783 1.00 23.88 C \ ATOM 305 N GLU A 38 10.844 16.086 4.784 1.00 25.25 N \ ATOM 306 CA GLU A 38 10.717 15.455 6.065 1.00 25.58 C \ ATOM 307 C GLU A 38 12.056 15.387 6.798 1.00 25.92 C \ ATOM 308 O GLU A 38 12.067 15.511 8.014 1.00 26.83 O \ ATOM 309 CB GLU A 38 10.119 14.066 5.887 1.00 25.29 C \ ATOM 310 CG GLU A 38 9.973 13.350 7.160 1.00 30.51 C \ ATOM 311 CD GLU A 38 9.201 12.055 6.977 1.00 38.32 C \ ATOM 312 OE1 GLU A 38 8.087 12.090 6.411 1.00 39.71 O \ ATOM 313 OE2 GLU A 38 9.741 10.994 7.375 1.00 43.09 O \ ATOM 314 N LYS A 39 13.172 15.212 6.086 1.00 26.09 N \ ATOM 315 CA LYS A 39 14.487 15.189 6.753 1.00 27.31 C \ ATOM 316 C LYS A 39 14.860 16.487 7.465 1.00 27.57 C \ ATOM 317 O LYS A 39 15.795 16.511 8.285 1.00 27.24 O \ ATOM 318 CB LYS A 39 15.609 14.847 5.768 1.00 27.67 C \ ATOM 319 CG LYS A 39 15.919 15.997 4.844 1.00 30.27 C \ ATOM 320 CD LYS A 39 16.866 15.616 3.762 1.00 36.12 C \ ATOM 321 CE LYS A 39 18.174 16.304 3.935 1.00 42.03 C \ ATOM 322 NZ LYS A 39 17.996 17.697 3.532 1.00 45.08 N \ ATOM 323 N ASN A 40 14.179 17.581 7.141 1.00 25.43 N \ ATOM 324 CA ASN A 40 14.508 18.826 7.782 1.00 24.99 C \ ATOM 325 C ASN A 40 13.746 19.047 9.070 1.00 24.89 C \ ATOM 326 O ASN A 40 14.011 20.025 9.710 1.00 24.19 O \ ATOM 327 CB ASN A 40 14.166 19.990 6.907 1.00 24.73 C \ ATOM 328 CG ASN A 40 15.217 20.277 5.862 1.00 27.16 C \ ATOM 329 OD1 ASN A 40 15.140 21.295 5.189 1.00 33.40 O \ ATOM 330 ND2 ASN A 40 16.179 19.414 5.713 1.00 23.09 N \ ATOM 331 N LEU A 41 12.759 18.208 9.354 1.00 25.71 N \ ATOM 332 CA LEU A 41 11.778 18.469 10.411 1.00 27.27 C \ ATOM 333 C LEU A 41 12.276 17.907 11.739 1.00 28.64 C \ ATOM 334 O LEU A 41 12.842 16.817 11.782 1.00 27.91 O \ ATOM 335 CB LEU A 41 10.405 17.911 10.057 1.00 26.42 C \ ATOM 336 CG LEU A 41 9.465 18.914 9.338 1.00 28.12 C \ ATOM 337 CD1 LEU A 41 9.977 19.376 8.012 1.00 24.51 C \ ATOM 338 CD2 LEU A 41 8.035 18.382 9.164 1.00 27.69 C \ ATOM 339 N ASP A 42 12.121 18.701 12.805 1.00 30.16 N \ ATOM 340 CA ASP A 42 12.355 18.211 14.182 1.00 32.15 C \ ATOM 341 C ASP A 42 11.165 18.589 15.067 1.00 31.38 C \ ATOM 342 O ASP A 42 11.296 19.243 16.114 1.00 31.50 O \ ATOM 343 CB ASP A 42 13.651 18.795 14.722 1.00 33.20 C \ ATOM 344 CG ASP A 42 14.052 18.170 16.035 1.00 39.62 C \ ATOM 345 OD1 ASP A 42 13.503 17.082 16.377 1.00 46.51 O \ ATOM 346 OD2 ASP A 42 14.899 18.797 16.742 1.00 49.92 O \ ATOM 347 N CYS A 43 9.993 18.225 14.561 1.00 31.03 N \ ATOM 348 CA CYS A 43 8.747 18.603 15.154 1.00 30.99 C \ ATOM 349 C CYS A 43 7.764 17.442 15.030 1.00 30.93 C \ ATOM 350 O CYS A 43 6.735 17.570 14.379 1.00 32.16 O \ ATOM 351 CB CYS A 43 8.223 19.892 14.521 1.00 29.85 C \ ATOM 352 SG CYS A 43 8.123 19.894 12.688 1.00 31.09 S \ ATOM 353 N PRO A 44 8.079 16.302 15.645 1.00 30.51 N \ ATOM 354 CA PRO A 44 7.234 15.128 15.445 1.00 30.40 C \ ATOM 355 C PRO A 44 5.821 15.271 15.961 1.00 30.61 C \ ATOM 356 O PRO A 44 4.901 14.703 15.383 1.00 29.57 O \ ATOM 357 CB PRO A 44 7.959 14.020 16.205 1.00 31.19 C \ ATOM 358 CG PRO A 44 9.012 14.656 16.991 1.00 30.86 C \ ATOM 359 CD PRO A 44 9.270 16.012 16.463 1.00 31.44 C \ ATOM 360 N GLU A 45 5.652 16.052 17.022 1.00 30.16 N \ ATOM 361 CA GLU A 45 4.335 16.237 17.621 1.00 30.60 C \ ATOM 362 C GLU A 45 3.464 17.129 16.775 1.00 30.30 C \ ATOM 363 O GLU A 45 2.255 16.913 16.759 1.00 30.74 O \ ATOM 364 CB GLU A 45 4.433 16.741 19.063 1.00 31.23 C \ ATOM 365 CG GLU A 45 4.885 15.607 20.056 1.00 32.23 C \ ATOM 366 CD GLU A 45 6.409 15.317 19.994 1.00 36.46 C \ ATOM 367 OE1 GLU A 45 7.191 16.265 19.712 1.00 36.55 O \ ATOM 368 OE2 GLU A 45 6.836 14.146 20.196 1.00 35.89 O \ ATOM 369 N LEU A 46 4.053 18.089 16.048 1.00 28.74 N \ ATOM 370 CA LEU A 46 3.296 18.879 15.055 1.00 29.39 C \ ATOM 371 C LEU A 46 2.864 18.077 13.821 1.00 29.26 C \ ATOM 372 O LEU A 46 1.764 18.271 13.329 1.00 29.35 O \ ATOM 373 CB LEU A 46 4.033 20.147 14.634 1.00 28.42 C \ ATOM 374 CG LEU A 46 4.342 21.072 15.805 1.00 31.26 C \ ATOM 375 CD1 LEU A 46 5.078 22.275 15.269 1.00 28.56 C \ ATOM 376 CD2 LEU A 46 3.069 21.496 16.597 1.00 29.55 C \ ATOM 377 N ILE A 47 3.724 17.194 13.328 1.00 29.72 N \ ATOM 378 CA ILE A 47 3.338 16.260 12.277 1.00 30.66 C \ ATOM 379 C ILE A 47 2.178 15.388 12.774 1.00 31.81 C \ ATOM 380 O ILE A 47 1.177 15.237 12.071 1.00 31.79 O \ ATOM 381 CB ILE A 47 4.520 15.377 11.838 1.00 31.02 C \ ATOM 382 CG1 ILE A 47 5.684 16.238 11.305 1.00 29.67 C \ ATOM 383 CG2 ILE A 47 4.047 14.353 10.786 1.00 32.51 C \ ATOM 384 CD1 ILE A 47 6.952 15.429 10.955 1.00 29.57 C \ ATOM 385 N SER A 48 2.278 14.874 14.004 1.00 33.03 N \ ATOM 386 CA SER A 48 1.187 14.108 14.633 1.00 35.19 C \ ATOM 387 C SER A 48 -0.119 14.842 14.745 1.00 35.08 C \ ATOM 388 O SER A 48 -1.161 14.270 14.446 1.00 35.91 O \ ATOM 389 CB SER A 48 1.574 13.609 16.026 1.00 36.18 C \ ATOM 390 OG SER A 48 2.462 12.523 15.863 1.00 40.98 O \ ATOM 391 N GLU A 49 -0.078 16.096 15.189 1.00 34.97 N \ ATOM 392 CA GLU A 49 -1.294 16.917 15.213 1.00 36.22 C \ ATOM 393 C GLU A 49 -1.870 17.033 13.798 1.00 36.66 C \ ATOM 394 O GLU A 49 -3.081 16.876 13.616 1.00 37.21 O \ ATOM 395 CB GLU A 49 -1.077 18.308 15.834 1.00 35.27 C \ ATOM 396 N PHE A 50 -1.007 17.281 12.811 1.00 36.67 N \ ATOM 397 CA PHE A 50 -1.449 17.354 11.416 1.00 38.14 C \ ATOM 398 C PHE A 50 -2.102 16.048 11.002 1.00 40.35 C \ ATOM 399 O PHE A 50 -3.187 16.079 10.468 1.00 41.51 O \ ATOM 400 CB PHE A 50 -0.304 17.712 10.438 1.00 36.00 C \ ATOM 401 CG PHE A 50 -0.688 17.612 8.983 1.00 33.19 C \ ATOM 402 CD1 PHE A 50 -1.437 18.595 8.390 1.00 32.06 C \ ATOM 403 CD2 PHE A 50 -0.294 16.531 8.225 1.00 31.81 C \ ATOM 404 CE1 PHE A 50 -1.800 18.500 7.052 1.00 31.93 C \ ATOM 405 CE2 PHE A 50 -0.675 16.412 6.913 1.00 34.06 C \ ATOM 406 CZ PHE A 50 -1.432 17.409 6.321 1.00 32.45 C \ ATOM 407 N MET A 51 -1.458 14.919 11.255 1.00 43.83 N \ ATOM 408 CA MET A 51 -1.991 13.615 10.841 1.00 48.05 C \ ATOM 409 C MET A 51 -3.301 13.210 11.491 1.00 49.55 C \ ATOM 410 O MET A 51 -3.968 12.332 10.982 1.00 50.26 O \ ATOM 411 CB MET A 51 -0.986 12.488 11.044 1.00 49.15 C \ ATOM 412 CG MET A 51 0.372 12.726 10.424 1.00 54.27 C \ ATOM 413 SD MET A 51 0.574 12.024 8.791 1.00 67.17 S \ ATOM 414 CE MET A 51 -0.185 13.243 7.709 1.00 64.00 C \ ATOM 415 N LYS A 52 -3.675 13.816 12.606 1.00 51.73 N \ ATOM 416 CA LYS A 52 -5.085 13.827 12.949 1.00 54.04 C \ ATOM 417 C LYS A 52 -5.670 14.844 11.974 1.00 55.01 C \ ATOM 418 O LYS A 52 -6.872 14.880 11.723 1.00 57.22 O \ ATOM 419 CB LYS A 52 -5.319 14.300 14.380 1.00 54.52 C \ ATOM 420 CG LYS A 52 -4.387 13.713 15.418 1.00 56.42 C \ ATOM 421 CD LYS A 52 -4.718 14.321 16.793 1.00 60.81 C \ ATOM 422 CE LYS A 52 -3.522 14.308 17.754 1.00 62.76 C \ ATOM 423 NZ LYS A 52 -2.929 12.942 17.932 1.00 63.99 N \ TER 424 LYS A 52 \ TER 497 SER T 19 \ HETATM 498 O HOH A 60 8.442 26.856 -0.200 1.00 26.61 O \ HETATM 499 O HOH A 61 5.652 31.137 8.467 1.00 28.05 O \ HETATM 500 O HOH A 62 13.182 14.008 3.479 1.00 29.10 O \ HETATM 501 O HOH A 63 7.180 10.878 -5.871 1.00 38.20 O \ HETATM 502 O HOH A 64 0.710 20.848 13.343 1.00 26.18 O \ HETATM 503 O HOH A 65 10.356 30.706 14.300 1.00 34.29 O \ HETATM 504 O HOH A 66 14.151 19.608 -7.101 1.00 27.60 O \ HETATM 505 O HOH A 67 -4.056 21.758 7.911 1.00 41.75 O \ HETATM 506 O HOH A 68 1.409 29.468 2.385 1.00 36.21 O \ HETATM 507 O HOH A 69 12.722 30.617 15.648 1.00 31.63 O \ HETATM 508 O HOH A 70 -2.654 28.442 12.015 1.00 54.28 O \ HETATM 509 O HOH A 71 9.969 15.333 12.796 1.00 35.78 O \ HETATM 510 O HOH A 72 8.417 40.685 6.669 1.00 52.77 O \ HETATM 511 O HOH A 73 0.968 14.665 -2.856 1.00 42.52 O \ HETATM 512 O HOH A 74 -7.284 12.925 9.359 1.00 55.70 O \ HETATM 513 O HOH A 75 15.932 15.923 -0.019 0.50 37.90 O \ HETATM 514 O HOH A 76 16.896 19.290 11.805 1.00 43.53 O \ HETATM 515 O HOH A 77 18.865 22.412 7.334 1.00 58.84 O \ HETATM 516 O HOH A 78 18.375 18.341 14.186 0.50 40.16 O \ HETATM 517 O HOH A 79 16.243 17.326 13.092 1.00 54.03 O \ HETATM 518 O HOH A 80 0.252 13.496 1.114 1.00 56.97 O \ HETATM 519 O HOH A 81 -4.224 26.402 11.079 1.00 51.67 O \ HETATM 520 O HOH A 82 6.131 25.378 18.694 1.00 43.74 O \ HETATM 521 O HOH A 83 5.092 12.634 21.765 1.00 43.10 O \ HETATM 522 O HOH A 84 17.962 30.899 14.709 1.00 55.36 O \ HETATM 523 O HOH A 85 7.236 23.294 -5.981 1.00 55.16 O \ HETATM 524 O HOH A 86 2.316 25.545 -2.677 1.00 53.36 O \ HETATM 525 O HOH A 87 2.362 21.670 -3.939 1.00 42.47 O \ HETATM 526 O HOH A 88 0.234 19.589 -3.288 1.00 62.80 O \ HETATM 527 O HOH A 89 8.142 8.289 -1.062 1.00 54.25 O \ HETATM 528 O HOH A 90 -10.129 11.836 12.199 1.00 59.49 O \ HETATM 529 O HOH A 91 7.397 7.183 2.729 1.00 72.92 O \ CONECT 476 479 \ CONECT 479 476 480 \ CONECT 480 479 481 486 \ CONECT 481 480 482 \ CONECT 482 481 483 \ CONECT 483 482 484 \ CONECT 484 483 485 \ CONECT 485 484 488 489 490 \ CONECT 486 480 487 491 \ CONECT 487 486 \ CONECT 488 485 \ CONECT 489 485 \ CONECT 490 485 \ CONECT 491 486 \ MASTER 315 0 1 2 5 0 0 6 529 2 14 7 \ END \ """, "3fdtchainA") cmd.hide("all") cmd.color('grey70', "3fdtchainA") cmd.show('cartoon', "3fdtchainA") cmd.center("3fdtchainA", state=0, origin=1) cmd.zoom("3fdtchainA", animate=-1) cmd.select("e3fdtA1", "c. A & i. 2-52") cmd.color("red", "e3fdtA1") cmd.disable("e3fdtA1")