cmd.read_pdbstr("""\ HEADER VIRAL PROTEIN/INHIBITOR 17-JUL-15 5CMZ \ TITLE ARTIFICIAL HIV FUSION INHIBITOR AP3 FUSED TO THE C-TERMINUS OF GP41 \ TITLE 2 NHR \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; \ COMPND 3 CHAIN: A, C; \ COMPND 4 FRAGMENT: UNP RESIDUES 35-79; \ COMPND 5 SYNONYM: GO41; \ COMPND 6 ENGINEERED: YES; \ COMPND 7 MOL_ID: 2; \ COMPND 8 MOLECULE: ARTIFICIAL HIV ENTRY INHIBITOR AP3; \ COMPND 9 CHAIN: B, D; \ COMPND 10 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; \ SOURCE 3 ORGANISM_COMMON: HIV1; \ SOURCE 4 ORGANISM_TAXID: 11676; \ SOURCE 5 GENE: ENV; \ SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 8 MOL_ID: 2; \ SOURCE 9 SYNTHETIC: YES; \ SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; \ SOURCE 11 ORGANISM_TAXID: 32630 \ KEYWDS ENFUVIRTIDE, HIV FUSION INHIBITOR, AP3, GP41, 6-HB, VIRAL PROTEIN- \ KEYWDS 2 INHIBITOR COMPLEX \ EXPDTA X-RAY DIFFRACTION \ AUTHOR Y.ZHU,S.YE,R.ZHANG \ REVDAT 2 30-OCT-24 5CMZ 1 REMARK \ REVDAT 1 16-SEP-15 5CMZ 0 \ JRNL AUTH X.ZHU,Y.ZHU,S.YE,Q.WANG,W.XU,S.SU,Z.SUN,F.YU,Q.LIU,C.WANG, \ JRNL AUTH 2 T.ZHANG,Z.ZHANG,X.ZHANG,J.XU,L.DU,K.LIU,L.LU,R.ZHANG,S.JIANG \ JRNL TITL IMPROVED PHARMACOLOGICAL AND STRUCTURAL PROPERTIES OF HIV \ JRNL TITL 2 FUSION INHIBITOR AP3 OVER ENFUVIRTIDE: HIGHLIGHTING \ JRNL TITL 3 ADVANTAGES OF ARTIFICIAL PEPTIDE STRATEGY. \ JRNL REF SCI REP V. 5 13028 2015 \ JRNL REFN ESSN 2045-2322 \ JRNL PMID 26286358 \ JRNL DOI 10.1038/SREP13028 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.57 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : PHENIX 1.8.1_1168 \ REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN \ REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, \ REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, \ REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, \ REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, \ REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, \ REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT \ REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : ML \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 \ REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 \ REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 \ REMARK 3 NUMBER OF REFLECTIONS : 7574 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 \ REMARK 3 R VALUE (WORKING SET) : 0.245 \ REMARK 3 FREE R VALUE : 0.264 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.490 \ REMARK 3 FREE R VALUE TEST SET COUNT : 340 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). \ REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE \ REMARK 3 1 10.0000 - 3.2430 0.99 3841 174 0.2382 0.2520 \ REMARK 3 2 3.2430 - 2.5743 0.89 3393 166 0.2606 0.2908 \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL \ REMARK 3 SOLVENT RADIUS : 1.11 \ REMARK 3 SHRINKAGE RADIUS : 0.90 \ REMARK 3 K_SOL : NULL \ REMARK 3 B_SOL : NULL \ REMARK 3 \ REMARK 3 ERROR ESTIMATES. \ REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 \ REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.980 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : NULL \ REMARK 3 B22 (A**2) : NULL \ REMARK 3 B33 (A**2) : NULL \ REMARK 3 B12 (A**2) : NULL \ REMARK 3 B13 (A**2) : NULL \ REMARK 3 B23 (A**2) : NULL \ REMARK 3 \ REMARK 3 TWINNING INFORMATION. \ REMARK 3 FRACTION: NULL \ REMARK 3 OPERATOR: NULL \ REMARK 3 \ REMARK 3 DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 RMSD COUNT \ REMARK 3 BOND : 0.004 1367 \ REMARK 3 ANGLE : 0.471 1820 \ REMARK 3 CHIRALITY : 0.034 203 \ REMARK 3 PLANARITY : 0.001 226 \ REMARK 3 DIHEDRAL : 16.319 547 \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 NCS DETAILS \ REMARK 3 NUMBER OF NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 5CMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUL-15. \ REMARK 100 THE DEPOSITION ID IS D_1000211900. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 26-SEP-14 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 6.5 \ REMARK 200 NUMBER OF CRYSTALS USED : NULL \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : SSRF \ REMARK 200 BEAMLINE : BL17U \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : PIXEL \ REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 \ REMARK 200 DATA SCALING SOFTWARE : HKL-2000 \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61523 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 \ REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 \ REMARK 200 DATA REDUNDANCY : 7.700 \ REMARK 200 R MERGE (I) : NULL \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 27.2000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL \ REMARK 200 COMPLETENESS FOR SHELL (%) : NULL \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL \ REMARK 200 SOFTWARE USED: PHASER \ REMARK 200 STARTING MODEL: NULL \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 63.06 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS \ REMARK 280 PH 6.5, 25% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, \ REMARK 280 TEMPERATURE 289K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -Y,X-Y,Z \ REMARK 290 3555 -X+Y,-X,Z \ REMARK 290 4555 -X,-Y,Z+1/2 \ REMARK 290 5555 Y,-X+Y,Z+1/2 \ REMARK 290 6555 X-Y,X,Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 113.94850 \ REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 113.94850 \ REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 113.94850 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 12980 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 12740 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -22.20150 \ REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 38.45413 \ REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -44.40300 \ REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 \ REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 12690 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -44.40300 \ REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 \ REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -22.20150 \ REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -38.45413 \ REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 375 \ REMARK 375 SPECIAL POSITION \ REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS \ REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL \ REMARK 375 POSITIONS. \ REMARK 375 \ REMARK 375 ATOM RES CSSEQI \ REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 SER A 1 \ REMARK 465 GLY A 2 \ REMARK 465 GLU B 73 \ REMARK 465 SER B 74 \ REMARK 465 ILE B 75 \ REMARK 465 LYS B 76 \ REMARK 465 LYS B 77 \ REMARK 465 ILE D 75 \ REMARK 465 LYS D 76 \ REMARK 465 LYS D 77 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 CH3 ACE D 40 N MET D 41 1.65 \ REMARK 500 O HOH A 313 O HOH C 212 1.85 \ REMARK 500 O HOH C 202 O HOH C 214 2.11 \ REMARK 500 OD1 ASP C 44 O HOH C 201 2.12 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC \ REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 \ REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A \ REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 \ REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE \ REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. \ REMARK 500 \ REMARK 500 DISTANCE CUTOFF: \ REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS \ REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE \ REMARK 500 O HOH A 302 O HOH B 101 2565 2.17 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 ACE B 40 O - C - N ANGL. DEV. = -16.9 DEGREES \ REMARK 500 ACE D 40 O - C - N ANGL. DEV. = -26.2 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 GLN B 71 -68.95 -120.40 \ REMARK 500 GLN D 71 44.98 -73.03 \ REMARK 500 GLU D 73 35.90 -73.98 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC2 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC3 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLN C 45 and NH2 C \ REMARK 800 100 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC4 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 40 and MET D \ REMARK 800 41 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 5CMU RELATED DB: PDB \ REMARK 900 RELATED ID: 5CN0 RELATED DB: PDB \ DBREF 5CMZ A 1 45 UNP Q1HMR5 Q1HMR5_9HIV1 35 79 \ DBREF 5CMZ B 40 77 PDB 5CMZ 5CMZ 40 77 \ DBREF 5CMZ C 1 45 UNP Q1HMR5 Q1HMR5_9HIV1 35 79 \ DBREF 5CMZ D 40 77 PDB 5CMZ 5CMZ 40 77 \ SEQADV 5CMZ NH2 A 100 UNP Q1HMR5 AMIDATION \ SEQADV 5CMZ NH2 C 100 UNP Q1HMR5 AMIDATION \ SEQRES 1 A 46 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA \ SEQRES 2 A 46 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP \ SEQRES 3 A 46 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU ALA VAL GLU \ SEQRES 4 A 46 ARG TYR LEU LYS ASP GLN NH2 \ SEQRES 1 B 38 ACE MET THR TRP GLU GLU TRP ASP LYS LYS ILE GLU GLU \ SEQRES 2 B 38 LEU ILE LYS LYS SER GLU GLU LEU ILE LYS LYS ILE GLU \ SEQRES 3 B 38 GLU GLN ILE LYS LYS GLN GLU GLU SER ILE LYS LYS \ SEQRES 1 C 46 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA \ SEQRES 2 C 46 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP \ SEQRES 3 C 46 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU ALA VAL GLU \ SEQRES 4 C 46 ARG TYR LEU LYS ASP GLN NH2 \ SEQRES 1 D 38 ACE MET THR TRP GLU GLU TRP ASP LYS LYS ILE GLU GLU \ SEQRES 2 D 38 LEU ILE LYS LYS SER GLU GLU LEU ILE LYS LYS ILE GLU \ SEQRES 3 D 38 GLU GLN ILE LYS LYS GLN GLU GLU SER ILE LYS LYS \ HET NH2 A 100 1 \ HET ACE B 40 3 \ HET NH2 C 100 1 \ HET ACE D 40 3 \ HET SO4 A 201 5 \ HET EDO A 202 4 \ HET P4G A 203 11 \ HETNAM NH2 AMINO GROUP \ HETNAM ACE ACETYL GROUP \ HETNAM SO4 SULFATE ION \ HETNAM EDO 1,2-ETHANEDIOL \ HETNAM P4G 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE \ HETSYN EDO ETHYLENE GLYCOL \ FORMUL 1 NH2 2(H2 N) \ FORMUL 2 ACE 2(C2 H4 O) \ FORMUL 5 SO4 O4 S 2- \ FORMUL 6 EDO C2 H6 O2 \ FORMUL 7 P4G C8 H18 O3 \ FORMUL 8 HOH *37(H2 O) \ HELIX 1 AA1 ILE A 3 GLN A 45 1 43 \ HELIX 2 AA2 THR B 42 LYS B 70 1 29 \ HELIX 3 AA3 ILE C 3 GLN C 45 1 43 \ HELIX 4 AA4 THR D 42 GLN D 71 1 30 \ LINK C GLN A 45 N NH2 A 100 1555 1555 1.21 \ LINK C ACE B 40 N MET B 41 1555 1555 1.33 \ LINK C GLN C 45 N NH2 C 100 1555 1555 1.33 \ LINK C ACE D 40 N MET D 41 1555 1555 1.30 \ SITE 1 AC1 6 ARG A 40 LYS A 43 HOH A 301 HOH A 304 \ SITE 2 AC1 6 ARG C 40 LYS C 43 \ SITE 1 AC2 3 ALA A 37 ASP A 44 HOH A 310 \ SITE 1 AC3 4 TYR C 41 LEU C 42 LYS C 43 ASP C 44 \ SITE 1 AC4 5 TRP C 26 THR D 42 GLU D 45 TRP D 46 \ SITE 2 AC4 5 LYS D 49 \ CRYST1 44.403 44.403 227.897 90.00 90.00 120.00 P 63 12 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.022521 0.013003 0.000000 0.00000 \ SCALE2 0.000000 0.026005 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.004388 0.00000 \ ATOM 1 N ILE A 3 -15.761 14.250 -54.180 1.00 97.26 N \ ATOM 2 CA ILE A 3 -16.799 14.381 -53.165 1.00 91.71 C \ ATOM 3 C ILE A 3 -16.879 13.115 -52.310 1.00 98.49 C \ ATOM 4 O ILE A 3 -17.515 13.102 -51.256 1.00 94.38 O \ ATOM 5 CB ILE A 3 -18.173 14.689 -53.799 1.00 83.67 C \ ATOM 6 CG1 ILE A 3 -19.098 15.371 -52.787 1.00 87.52 C \ ATOM 7 CG2 ILE A 3 -18.799 13.425 -54.371 1.00 82.01 C \ ATOM 8 CD1 ILE A 3 -20.453 15.746 -53.347 1.00 83.38 C \ ATOM 9 N VAL A 4 -16.230 12.050 -52.773 1.00 96.87 N \ ATOM 10 CA VAL A 4 -16.116 10.826 -51.988 1.00 95.75 C \ ATOM 11 C VAL A 4 -15.054 11.054 -50.915 1.00 97.16 C \ ATOM 12 O VAL A 4 -15.051 10.406 -49.867 1.00 92.63 O \ ATOM 13 CB VAL A 4 -15.753 9.612 -52.874 1.00 91.57 C \ ATOM 14 CG1 VAL A 4 -14.376 9.790 -53.495 1.00 90.92 C \ ATOM 15 CG2 VAL A 4 -15.824 8.318 -52.076 1.00 96.70 C \ ATOM 16 N GLN A 5 -14.161 11.998 -51.194 1.00 95.18 N \ ATOM 17 CA GLN A 5 -13.171 12.457 -50.232 1.00 92.74 C \ ATOM 18 C GLN A 5 -13.878 13.139 -49.067 1.00 95.29 C \ ATOM 19 O GLN A 5 -13.443 13.052 -47.917 1.00 89.60 O \ ATOM 20 CB GLN A 5 -12.211 13.430 -50.919 1.00 93.76 C \ ATOM 21 CG GLN A 5 -11.587 14.470 -50.005 1.00100.54 C \ ATOM 22 CD GLN A 5 -11.181 15.722 -50.757 1.00114.15 C \ ATOM 23 OE1 GLN A 5 -11.823 16.765 -50.637 1.00113.48 O \ ATOM 24 NE2 GLN A 5 -10.114 15.624 -51.541 1.00117.85 N \ ATOM 25 N GLN A 6 -14.983 13.809 -49.378 1.00 93.70 N \ ATOM 26 CA GLN A 6 -15.778 14.502 -48.375 1.00 89.85 C \ ATOM 27 C GLN A 6 -16.398 13.510 -47.396 1.00 91.19 C \ ATOM 28 O GLN A 6 -16.253 13.653 -46.182 1.00 86.43 O \ ATOM 29 CB GLN A 6 -16.879 15.322 -49.050 1.00 88.11 C \ ATOM 30 CG GLN A 6 -17.438 16.447 -48.201 1.00 89.39 C \ ATOM 31 CD GLN A 6 -16.532 17.659 -48.176 1.00 96.29 C \ ATOM 32 OE1 GLN A 6 -15.448 17.627 -47.596 1.00 96.48 O \ ATOM 33 NE2 GLN A 6 -16.970 18.736 -48.815 1.00100.50 N \ ATOM 34 N GLN A 7 -17.078 12.501 -47.933 1.00 89.04 N \ ATOM 35 CA GLN A 7 -17.755 11.498 -47.115 1.00 85.49 C \ ATOM 36 C GLN A 7 -16.793 10.727 -46.218 1.00 77.28 C \ ATOM 37 O GLN A 7 -17.148 10.338 -45.108 1.00 73.05 O \ ATOM 38 CB GLN A 7 -18.536 10.525 -47.999 1.00 86.43 C \ ATOM 39 CG GLN A 7 -19.648 11.179 -48.793 1.00 81.85 C \ ATOM 40 CD GLN A 7 -20.440 10.186 -49.617 1.00 92.39 C \ ATOM 41 OE1 GLN A 7 -19.944 9.115 -49.964 1.00 97.84 O \ ATOM 42 NE2 GLN A 7 -21.681 10.536 -49.930 1.00 88.96 N \ ATOM 43 N ASN A 8 -15.578 10.502 -46.708 1.00 81.81 N \ ATOM 44 CA ASN A 8 -14.547 9.846 -45.914 1.00 80.58 C \ ATOM 45 C ASN A 8 -14.138 10.720 -44.731 1.00 77.77 C \ ATOM 46 O ASN A 8 -13.707 10.217 -43.694 1.00 74.40 O \ ATOM 47 CB ASN A 8 -13.334 9.508 -46.782 1.00 80.39 C \ ATOM 48 CG ASN A 8 -12.245 8.789 -46.010 1.00 89.48 C \ ATOM 49 OD1 ASN A 8 -11.251 9.392 -45.606 1.00 82.05 O \ ATOM 50 ND2 ASN A 8 -12.429 7.491 -45.797 1.00 90.93 N \ ATOM 51 N ASN A 9 -14.285 12.031 -44.893 1.00 73.64 N \ ATOM 52 CA ASN A 9 -14.004 12.973 -43.817 1.00 73.71 C \ ATOM 53 C ASN A 9 -15.206 13.180 -42.899 1.00 74.55 C \ ATOM 54 O ASN A 9 -15.043 13.406 -41.701 1.00 67.04 O \ ATOM 55 CB ASN A 9 -13.514 14.311 -44.378 1.00 79.78 C \ ATOM 56 CG ASN A 9 -12.094 14.237 -44.900 1.00 87.33 C \ ATOM 57 OD1 ASN A 9 -11.284 13.445 -44.418 1.00 75.55 O \ ATOM 58 ND2 ASN A 9 -11.783 15.067 -45.889 1.00 90.96 N \ ATOM 59 N LEU A 10 -16.408 13.109 -43.464 1.00 70.33 N \ ATOM 60 CA LEU A 10 -17.626 13.143 -42.662 1.00 63.71 C \ ATOM 61 C LEU A 10 -17.671 11.922 -41.749 1.00 66.74 C \ ATOM 62 O LEU A 10 -18.130 12.001 -40.611 1.00 62.00 O \ ATOM 63 CB LEU A 10 -18.872 13.173 -43.551 1.00 69.61 C \ ATOM 64 CG LEU A 10 -19.486 14.522 -43.937 1.00 73.40 C \ ATOM 65 CD1 LEU A 10 -19.810 15.337 -42.700 1.00 72.51 C \ ATOM 66 CD2 LEU A 10 -18.581 15.307 -44.865 1.00 78.22 C \ ATOM 67 N LEU A 11 -17.184 10.795 -42.261 1.00 61.23 N \ ATOM 68 CA LEU A 11 -17.135 9.554 -41.498 1.00 63.11 C \ ATOM 69 C LEU A 11 -16.109 9.634 -40.372 1.00 64.61 C \ ATOM 70 O LEU A 11 -16.355 9.156 -39.265 1.00 65.97 O \ ATOM 71 CB LEU A 11 -16.804 8.379 -42.421 1.00 68.86 C \ ATOM 72 CG LEU A 11 -16.638 7.010 -41.761 1.00 63.86 C \ ATOM 73 CD1 LEU A 11 -17.946 6.557 -41.138 1.00 62.80 C \ ATOM 74 CD2 LEU A 11 -16.133 5.987 -42.764 1.00 66.80 C \ ATOM 75 N ARG A 12 -14.962 10.240 -40.661 1.00 65.14 N \ ATOM 76 CA ARG A 12 -13.889 10.369 -39.678 1.00 61.74 C \ ATOM 77 C ARG A 12 -14.294 11.236 -38.489 1.00 62.38 C \ ATOM 78 O ARG A 12 -13.841 11.013 -37.368 1.00 63.32 O \ ATOM 79 CB ARG A 12 -12.618 10.919 -40.334 1.00 58.11 C \ ATOM 80 CG ARG A 12 -11.717 9.849 -40.938 1.00 68.95 C \ ATOM 81 CD ARG A 12 -10.539 10.461 -41.682 1.00 75.14 C \ ATOM 82 NE ARG A 12 -9.404 9.545 -41.763 1.00 88.80 N \ ATOM 83 CZ ARG A 12 -8.344 9.599 -40.962 1.00 97.82 C \ ATOM 84 NH1 ARG A 12 -8.269 10.531 -40.022 1.00 98.22 N \ ATOM 85 NH2 ARG A 12 -7.356 8.725 -41.104 1.00 97.06 N \ ATOM 86 N ALA A 13 -15.148 12.224 -38.737 1.00 59.29 N \ ATOM 87 CA ALA A 13 -15.648 13.084 -37.672 1.00 57.04 C \ ATOM 88 C ALA A 13 -16.646 12.326 -36.803 1.00 61.67 C \ ATOM 89 O ALA A 13 -16.696 12.513 -35.587 1.00 54.98 O \ ATOM 90 CB ALA A 13 -16.285 14.333 -38.252 1.00 45.41 C \ ATOM 91 N ILE A 14 -17.439 11.469 -37.439 1.00 59.00 N \ ATOM 92 CA ILE A 14 -18.419 10.652 -36.734 1.00 55.59 C \ ATOM 93 C ILE A 14 -17.731 9.585 -35.880 1.00 55.97 C \ ATOM 94 O ILE A 14 -18.178 9.282 -34.772 1.00 57.05 O \ ATOM 95 CB ILE A 14 -19.420 10.009 -37.721 1.00 62.66 C \ ATOM 96 CG1 ILE A 14 -20.292 11.093 -38.358 1.00 58.05 C \ ATOM 97 CG2 ILE A 14 -20.294 8.978 -37.028 1.00 54.77 C \ ATOM 98 CD1 ILE A 14 -21.371 10.558 -39.267 1.00 59.12 C \ ATOM 99 N GLU A 15 -16.635 9.031 -36.391 1.00 62.71 N \ ATOM 100 CA GLU A 15 -15.858 8.045 -35.646 1.00 61.75 C \ ATOM 101 C GLU A 15 -15.216 8.666 -34.408 1.00 61.88 C \ ATOM 102 O GLU A 15 -15.085 8.014 -33.374 1.00 62.38 O \ ATOM 103 CB GLU A 15 -14.784 7.417 -36.539 1.00 53.49 C \ ATOM 104 CG GLU A 15 -15.331 6.506 -37.630 1.00 68.23 C \ ATOM 105 CD GLU A 15 -14.241 5.953 -38.531 1.00 72.71 C \ ATOM 106 OE1 GLU A 15 -14.520 4.998 -39.284 1.00 73.93 O \ ATOM 107 OE2 GLU A 15 -13.107 6.477 -38.489 1.00 70.43 O \ ATOM 108 N ALA A 16 -14.817 9.928 -34.520 1.00 52.03 N \ ATOM 109 CA ALA A 16 -14.205 10.642 -33.405 1.00 59.94 C \ ATOM 110 C ALA A 16 -15.233 10.946 -32.319 1.00 59.86 C \ ATOM 111 O ALA A 16 -14.926 10.895 -31.128 1.00 52.50 O \ ATOM 112 CB ALA A 16 -13.551 11.923 -33.891 1.00 53.36 C \ ATOM 113 N GLN A 17 -16.453 11.266 -32.739 1.00 57.49 N \ ATOM 114 CA GLN A 17 -17.534 11.561 -31.806 1.00 56.15 C \ ATOM 115 C GLN A 17 -18.096 10.287 -31.184 1.00 54.39 C \ ATOM 116 O GLN A 17 -18.696 10.324 -30.112 1.00 53.44 O \ ATOM 117 CB GLN A 17 -18.645 12.353 -32.502 1.00 53.40 C \ ATOM 118 CG GLN A 17 -18.233 13.756 -32.933 1.00 53.09 C \ ATOM 119 CD GLN A 17 -19.359 14.516 -33.606 1.00 59.30 C \ ATOM 120 OE1 GLN A 17 -20.376 13.936 -33.986 1.00 61.95 O \ ATOM 121 NE2 GLN A 17 -19.184 15.824 -33.757 1.00 53.50 N \ ATOM 122 N GLN A 18 -17.900 9.162 -31.863 1.00 58.27 N \ ATOM 123 CA GLN A 18 -18.332 7.871 -31.340 1.00 55.47 C \ ATOM 124 C GLN A 18 -17.471 7.468 -30.144 1.00 60.10 C \ ATOM 125 O GLN A 18 -17.954 6.850 -29.195 1.00 59.56 O \ ATOM 126 CB GLN A 18 -18.265 6.801 -32.434 1.00 58.12 C \ ATOM 127 CG GLN A 18 -18.637 5.397 -31.970 1.00 58.66 C \ ATOM 128 CD GLN A 18 -20.090 5.279 -31.542 1.00 70.71 C \ ATOM 129 OE1 GLN A 18 -20.933 6.083 -31.938 1.00 80.32 O \ ATOM 130 NE2 GLN A 18 -20.388 4.271 -30.729 1.00 74.29 N \ ATOM 131 N HIS A 19 -16.196 7.841 -30.190 1.00 53.42 N \ ATOM 132 CA HIS A 19 -15.267 7.525 -29.112 1.00 59.97 C \ ATOM 133 C HIS A 19 -15.449 8.489 -27.941 1.00 61.35 C \ ATOM 134 O HIS A 19 -15.249 8.117 -26.786 1.00 56.25 O \ ATOM 135 CB HIS A 19 -13.824 7.562 -29.620 1.00 58.75 C \ ATOM 136 CG HIS A 19 -12.848 6.858 -28.731 1.00 78.91 C \ ATOM 137 ND1 HIS A 19 -13.242 6.038 -27.692 1.00 81.25 N \ ATOM 138 CD2 HIS A 19 -11.494 6.845 -28.723 1.00 81.54 C \ ATOM 139 CE1 HIS A 19 -12.174 5.555 -27.086 1.00 84.35 C \ ATOM 140 NE2 HIS A 19 -11.099 6.030 -27.691 1.00 86.43 N \ ATOM 141 N LEU A 20 -15.826 9.728 -28.247 1.00 57.26 N \ ATOM 142 CA LEU A 20 -16.111 10.718 -27.213 1.00 53.59 C \ ATOM 143 C LEU A 20 -17.332 10.313 -26.395 1.00 53.93 C \ ATOM 144 O LEU A 20 -17.358 10.490 -25.177 1.00 50.95 O \ ATOM 145 CB LEU A 20 -16.330 12.101 -27.831 1.00 50.55 C \ ATOM 146 CG LEU A 20 -15.097 12.977 -28.049 1.00 56.06 C \ ATOM 147 CD1 LEU A 20 -15.463 14.248 -28.798 1.00 49.86 C \ ATOM 148 CD2 LEU A 20 -14.454 13.312 -26.717 1.00 53.10 C \ ATOM 149 N LEU A 21 -18.338 9.767 -27.072 1.00 47.54 N \ ATOM 150 CA LEU A 21 -19.564 9.326 -26.413 1.00 51.14 C \ ATOM 151 C LEU A 21 -19.318 8.157 -25.462 1.00 51.18 C \ ATOM 152 O LEU A 21 -19.859 8.127 -24.358 1.00 50.22 O \ ATOM 153 CB LEU A 21 -20.629 8.958 -27.449 1.00 48.39 C \ ATOM 154 CG LEU A 21 -21.421 10.126 -28.035 1.00 54.78 C \ ATOM 155 CD1 LEU A 21 -22.185 9.703 -29.276 1.00 52.86 C \ ATOM 156 CD2 LEU A 21 -22.373 10.686 -26.993 1.00 49.78 C \ ATOM 157 N GLN A 22 -18.500 7.200 -25.890 1.00 52.01 N \ ATOM 158 CA GLN A 22 -18.162 6.052 -25.053 1.00 54.35 C \ ATOM 159 C GLN A 22 -17.402 6.476 -23.800 1.00 51.73 C \ ATOM 160 O GLN A 22 -17.517 5.840 -22.753 1.00 51.67 O \ ATOM 161 CB GLN A 22 -17.350 5.022 -25.844 1.00 51.90 C \ ATOM 162 CG GLN A 22 -18.163 4.229 -26.858 1.00 64.96 C \ ATOM 163 CD GLN A 22 -17.310 3.278 -27.678 1.00 81.63 C \ ATOM 164 OE1 GLN A 22 -16.116 3.505 -27.872 1.00 85.18 O \ ATOM 165 NE2 GLN A 22 -17.922 2.204 -28.162 1.00 85.30 N \ ATOM 166 N LEU A 23 -16.631 7.552 -23.911 1.00 51.31 N \ ATOM 167 CA LEU A 23 -15.866 8.063 -22.777 1.00 49.68 C \ ATOM 168 C LEU A 23 -16.748 8.815 -21.781 1.00 48.28 C \ ATOM 169 O LEU A 23 -16.509 8.766 -20.576 1.00 52.95 O \ ATOM 170 CB LEU A 23 -14.715 8.951 -23.254 1.00 53.54 C \ ATOM 171 CG LEU A 23 -13.523 8.223 -23.873 1.00 55.67 C \ ATOM 172 CD1 LEU A 23 -12.474 9.210 -24.359 1.00 57.76 C \ ATOM 173 CD2 LEU A 23 -12.921 7.258 -22.868 1.00 52.78 C \ ATOM 174 N THR A 24 -17.767 9.504 -22.285 1.00 48.99 N \ ATOM 175 CA THR A 24 -18.718 10.198 -21.420 1.00 48.62 C \ ATOM 176 C THR A 24 -19.584 9.195 -20.664 1.00 45.33 C \ ATOM 177 O THR A 24 -19.886 9.388 -19.487 1.00 45.66 O \ ATOM 178 CB THR A 24 -19.618 11.167 -22.208 1.00 43.25 C \ ATOM 179 OG1 THR A 24 -20.303 10.456 -23.246 1.00 49.36 O \ ATOM 180 CG2 THR A 24 -18.789 12.285 -22.822 1.00 41.19 C \ ATOM 181 N VAL A 25 -19.980 8.128 -21.352 1.00 44.52 N \ ATOM 182 CA VAL A 25 -20.746 7.048 -20.735 1.00 41.20 C \ ATOM 183 C VAL A 25 -19.948 6.397 -19.607 1.00 43.84 C \ ATOM 184 O VAL A 25 -20.496 6.071 -18.553 1.00 42.20 O \ ATOM 185 CB VAL A 25 -21.164 5.986 -21.775 1.00 42.62 C \ ATOM 186 CG1 VAL A 25 -21.746 4.757 -21.094 1.00 44.39 C \ ATOM 187 CG2 VAL A 25 -22.168 6.573 -22.755 1.00 39.28 C \ ATOM 188 N TRP A 26 -18.649 6.226 -19.829 1.00 42.89 N \ ATOM 189 CA TRP A 26 -17.761 5.677 -18.811 1.00 47.68 C \ ATOM 190 C TRP A 26 -17.776 6.538 -17.552 1.00 48.66 C \ ATOM 191 O TRP A 26 -17.893 6.020 -16.443 1.00 47.53 O \ ATOM 192 CB TRP A 26 -16.331 5.562 -19.347 1.00 44.40 C \ ATOM 193 CG TRP A 26 -15.348 5.026 -18.338 1.00 48.73 C \ ATOM 194 CD1 TRP A 26 -15.042 3.717 -18.105 1.00 46.73 C \ ATOM 195 CD2 TRP A 26 -14.543 5.794 -17.431 1.00 54.75 C \ ATOM 196 NE1 TRP A 26 -14.098 3.623 -17.108 1.00 50.58 N \ ATOM 197 CE2 TRP A 26 -13.777 4.882 -16.678 1.00 51.69 C \ ATOM 198 CE3 TRP A 26 -14.399 7.161 -17.182 1.00 48.97 C \ ATOM 199 CZ2 TRP A 26 -12.878 5.298 -15.693 1.00 50.79 C \ ATOM 200 CZ3 TRP A 26 -13.508 7.571 -16.205 1.00 51.31 C \ ATOM 201 CH2 TRP A 26 -12.759 6.643 -15.473 1.00 54.74 C \ ATOM 202 N GLY A 27 -17.666 7.851 -17.734 1.00 39.51 N \ ATOM 203 CA GLY A 27 -17.642 8.783 -16.620 1.00 36.65 C \ ATOM 204 C GLY A 27 -18.948 8.839 -15.850 1.00 39.10 C \ ATOM 205 O GLY A 27 -18.946 8.913 -14.622 1.00 40.54 O \ ATOM 206 N ILE A 28 -20.065 8.808 -16.572 1.00 42.56 N \ ATOM 207 CA ILE A 28 -21.385 8.842 -15.950 1.00 40.81 C \ ATOM 208 C ILE A 28 -21.612 7.609 -15.072 1.00 41.20 C \ ATOM 209 O ILE A 28 -22.197 7.709 -13.991 1.00 43.73 O \ ATOM 210 CB ILE A 28 -22.505 8.977 -17.007 1.00 40.55 C \ ATOM 211 CG1 ILE A 28 -22.379 10.312 -17.742 1.00 44.52 C \ ATOM 212 CG2 ILE A 28 -23.878 8.880 -16.365 1.00 36.81 C \ ATOM 213 CD1 ILE A 28 -23.407 10.514 -18.836 1.00 45.99 C \ ATOM 214 N LYS A 29 -21.137 6.455 -15.534 1.00 41.09 N \ ATOM 215 CA LYS A 29 -21.239 5.219 -14.763 1.00 42.30 C \ ATOM 216 C LYS A 29 -20.397 5.288 -13.494 1.00 44.09 C \ ATOM 217 O LYS A 29 -20.815 4.810 -12.441 1.00 46.48 O \ ATOM 218 CB LYS A 29 -20.817 4.011 -15.608 1.00 44.47 C \ ATOM 219 CG LYS A 29 -21.794 3.622 -16.713 1.00 48.92 C \ ATOM 220 CD LYS A 29 -21.295 2.404 -17.485 1.00 54.68 C \ ATOM 221 CE LYS A 29 -22.318 1.935 -18.510 1.00 71.76 C \ ATOM 222 NZ LYS A 29 -21.824 0.771 -19.300 1.00 81.61 N \ ATOM 223 N GLN A 30 -19.211 5.878 -13.599 1.00 45.13 N \ ATOM 224 CA GLN A 30 -18.322 6.014 -12.448 1.00 41.22 C \ ATOM 225 C GLN A 30 -18.937 6.918 -11.389 1.00 43.81 C \ ATOM 226 O GLN A 30 -18.952 6.577 -10.208 1.00 45.75 O \ ATOM 227 CB GLN A 30 -16.960 6.570 -12.871 1.00 47.24 C \ ATOM 228 CG GLN A 30 -16.187 5.689 -13.838 1.00 60.79 C \ ATOM 229 CD GLN A 30 -15.734 4.388 -13.215 1.00 71.51 C \ ATOM 230 OE1 GLN A 30 -16.133 3.308 -13.647 1.00 71.67 O \ ATOM 231 NE2 GLN A 30 -14.888 4.484 -12.197 1.00 62.17 N \ ATOM 232 N LEU A 31 -19.449 8.069 -11.816 1.00 39.55 N \ ATOM 233 CA LEU A 31 -20.061 9.026 -10.897 1.00 40.69 C \ ATOM 234 C LEU A 31 -21.316 8.474 -10.228 1.00 45.46 C \ ATOM 235 O LEU A 31 -21.578 8.759 -9.059 1.00 43.17 O \ ATOM 236 CB LEU A 31 -20.380 10.338 -11.617 1.00 46.02 C \ ATOM 237 CG LEU A 31 -19.173 11.094 -12.173 1.00 42.60 C \ ATOM 238 CD1 LEU A 31 -19.596 12.362 -12.898 1.00 41.39 C \ ATOM 239 CD2 LEU A 31 -18.190 11.410 -11.059 1.00 44.30 C \ ATOM 240 N GLN A 32 -22.088 7.684 -10.970 1.00 42.06 N \ ATOM 241 CA GLN A 32 -23.313 7.094 -10.438 1.00 43.48 C \ ATOM 242 C GLN A 32 -23.000 6.103 -9.319 1.00 46.76 C \ ATOM 243 O GLN A 32 -23.735 6.007 -8.336 1.00 49.00 O \ ATOM 244 CB GLN A 32 -24.108 6.414 -11.558 1.00 44.20 C \ ATOM 245 CG GLN A 32 -25.543 6.052 -11.185 1.00 49.01 C \ ATOM 246 CD GLN A 32 -25.644 4.754 -10.403 1.00 52.06 C \ ATOM 247 OE1 GLN A 32 -24.845 3.839 -10.597 1.00 58.71 O \ ATOM 248 NE2 GLN A 32 -26.624 4.671 -9.512 1.00 43.18 N \ ATOM 249 N ALA A 33 -21.902 5.371 -9.470 1.00 44.88 N \ ATOM 250 CA ALA A 33 -21.487 4.406 -8.458 1.00 40.72 C \ ATOM 251 C ALA A 33 -20.938 5.102 -7.218 1.00 39.66 C \ ATOM 252 O ALA A 33 -21.084 4.603 -6.103 1.00 43.12 O \ ATOM 253 CB ALA A 33 -20.458 3.448 -9.028 1.00 29.46 C \ ATOM 254 N ARG A 34 -20.307 6.254 -7.416 1.00 39.32 N \ ATOM 255 CA ARG A 34 -19.701 6.986 -6.309 1.00 40.79 C \ ATOM 256 C ARG A 34 -20.729 7.736 -5.463 1.00 43.00 C \ ATOM 257 O ARG A 34 -20.591 7.809 -4.243 1.00 39.81 O \ ATOM 258 CB ARG A 34 -18.608 7.934 -6.813 1.00 42.39 C \ ATOM 259 CG ARG A 34 -17.386 7.218 -7.380 1.00 38.88 C \ ATOM 260 CD ARG A 34 -16.103 7.956 -7.045 1.00 37.64 C \ ATOM 261 NE ARG A 34 -15.699 8.898 -8.084 1.00 50.18 N \ ATOM 262 CZ ARG A 34 -15.030 10.021 -7.853 1.00 36.17 C \ ATOM 263 NH1 ARG A 34 -14.699 10.355 -6.616 1.00 45.99 N \ ATOM 264 NH2 ARG A 34 -14.699 10.816 -8.858 1.00 48.39 N \ ATOM 265 N ILE A 35 -21.756 8.286 -6.103 1.00 41.93 N \ ATOM 266 CA ILE A 35 -22.821 8.966 -5.370 1.00 36.41 C \ ATOM 267 C ILE A 35 -23.687 7.951 -4.623 1.00 39.44 C \ ATOM 268 O ILE A 35 -24.200 8.237 -3.540 1.00 42.63 O \ ATOM 269 CB ILE A 35 -23.685 9.864 -6.296 1.00 42.23 C \ ATOM 270 CG1 ILE A 35 -24.721 10.646 -5.485 1.00 42.84 C \ ATOM 271 CG2 ILE A 35 -24.375 9.041 -7.374 1.00 51.58 C \ ATOM 272 CD1 ILE A 35 -24.117 11.544 -4.428 1.00 47.35 C \ ATOM 273 N LEU A 36 -23.825 6.758 -5.195 1.00 43.48 N \ ATOM 274 CA LEU A 36 -24.608 5.694 -4.575 1.00 36.35 C \ ATOM 275 C LEU A 36 -23.936 5.202 -3.296 1.00 41.66 C \ ATOM 276 O LEU A 36 -24.602 4.925 -2.300 1.00 39.31 O \ ATOM 277 CB LEU A 36 -24.805 4.535 -5.557 1.00 37.74 C \ ATOM 278 CG LEU A 36 -25.658 3.353 -5.088 1.00 47.45 C \ ATOM 279 CD1 LEU A 36 -26.997 3.832 -4.555 1.00 40.88 C \ ATOM 280 CD2 LEU A 36 -25.860 2.362 -6.220 1.00 33.73 C \ ATOM 281 N ALA A 37 -22.610 5.106 -3.331 1.00 42.20 N \ ATOM 282 CA ALA A 37 -21.842 4.673 -2.168 1.00 40.35 C \ ATOM 283 C ALA A 37 -21.916 5.705 -1.046 1.00 44.69 C \ ATOM 284 O ALA A 37 -21.912 5.351 0.134 1.00 43.62 O \ ATOM 285 CB ALA A 37 -20.398 4.405 -2.555 1.00 28.49 C \ ATOM 286 N VAL A 38 -21.979 6.979 -1.424 1.00 38.50 N \ ATOM 287 CA VAL A 38 -22.120 8.062 -0.457 1.00 41.26 C \ ATOM 288 C VAL A 38 -23.522 8.071 0.152 1.00 36.89 C \ ATOM 289 O VAL A 38 -23.672 8.196 1.367 1.00 39.92 O \ ATOM 290 CB VAL A 38 -21.801 9.433 -1.090 1.00 42.67 C \ ATOM 291 CG1 VAL A 38 -22.235 10.565 -0.174 1.00 26.18 C \ ATOM 292 CG2 VAL A 38 -20.315 9.539 -1.400 1.00 34.64 C \ ATOM 293 N GLU A 39 -24.540 7.930 -0.693 1.00 36.94 N \ ATOM 294 CA GLU A 39 -25.926 7.875 -0.231 1.00 42.45 C \ ATOM 295 C GLU A 39 -26.157 6.717 0.737 1.00 41.93 C \ ATOM 296 O GLU A 39 -26.890 6.854 1.716 1.00 44.95 O \ ATOM 297 CB GLU A 39 -26.887 7.765 -1.420 1.00 38.07 C \ ATOM 298 CG GLU A 39 -27.019 9.041 -2.242 1.00 44.00 C \ ATOM 299 CD GLU A 39 -27.735 8.817 -3.561 1.00 40.88 C \ ATOM 300 OE1 GLU A 39 -28.333 9.778 -4.086 1.00 45.48 O \ ATOM 301 OE2 GLU A 39 -27.690 7.683 -4.081 1.00 38.81 O \ ATOM 302 N ARG A 40 -25.533 5.577 0.457 1.00 44.96 N \ ATOM 303 CA ARG A 40 -25.652 4.405 1.319 1.00 36.99 C \ ATOM 304 C ARG A 40 -24.900 4.597 2.632 1.00 44.81 C \ ATOM 305 O ARG A 40 -25.349 4.140 3.682 1.00 44.88 O \ ATOM 306 CB ARG A 40 -25.161 3.149 0.591 1.00 35.86 C \ ATOM 307 CG ARG A 40 -26.152 2.598 -0.430 1.00 41.38 C \ ATOM 308 CD ARG A 40 -25.501 1.617 -1.389 1.00 38.10 C \ ATOM 309 NE ARG A 40 -26.493 0.931 -2.217 1.00 41.28 N \ ATOM 310 CZ ARG A 40 -26.200 0.147 -3.249 1.00 42.18 C \ ATOM 311 NH1 ARG A 40 -24.939 -0.052 -3.598 1.00 40.22 N \ ATOM 312 NH2 ARG A 40 -27.171 -0.434 -3.936 1.00 41.01 N \ ATOM 313 N TYR A 41 -23.763 5.283 2.569 1.00 46.11 N \ ATOM 314 CA TYR A 41 -22.964 5.559 3.760 1.00 40.25 C \ ATOM 315 C TYR A 41 -23.742 6.407 4.761 1.00 45.90 C \ ATOM 316 O TYR A 41 -23.820 6.070 5.941 1.00 43.85 O \ ATOM 317 CB TYR A 41 -21.650 6.253 3.382 1.00 46.46 C \ ATOM 318 CG TYR A 41 -20.825 6.689 4.572 1.00 45.60 C \ ATOM 319 CD1 TYR A 41 -19.984 5.797 5.222 1.00 48.03 C \ ATOM 320 CD2 TYR A 41 -20.887 7.991 5.046 1.00 41.99 C \ ATOM 321 CE1 TYR A 41 -19.230 6.189 6.313 1.00 42.98 C \ ATOM 322 CE2 TYR A 41 -20.138 8.393 6.136 1.00 48.29 C \ ATOM 323 CZ TYR A 41 -19.312 7.488 6.765 1.00 56.94 C \ ATOM 324 OH TYR A 41 -18.566 7.886 7.850 1.00 52.95 O \ ATOM 325 N LEU A 42 -24.319 7.503 4.279 1.00 45.45 N \ ATOM 326 CA LEU A 42 -25.086 8.410 5.125 1.00 41.34 C \ ATOM 327 C LEU A 42 -26.311 7.720 5.722 1.00 41.95 C \ ATOM 328 O LEU A 42 -26.743 8.047 6.827 1.00 48.53 O \ ATOM 329 CB LEU A 42 -25.505 9.645 4.328 1.00 35.40 C \ ATOM 330 CG LEU A 42 -24.361 10.450 3.711 1.00 40.15 C \ ATOM 331 CD1 LEU A 42 -24.900 11.582 2.852 1.00 29.94 C \ ATOM 332 CD2 LEU A 42 -23.444 10.986 4.797 1.00 31.69 C \ ATOM 333 N LYS A 43 -26.859 6.760 4.985 1.00 48.59 N \ ATOM 334 CA LYS A 43 -28.020 6.002 5.439 1.00 45.77 C \ ATOM 335 C LYS A 43 -27.636 5.002 6.528 1.00 51.21 C \ ATOM 336 O LYS A 43 -28.367 4.827 7.506 1.00 53.69 O \ ATOM 337 CB LYS A 43 -28.671 5.278 4.258 1.00 44.83 C \ ATOM 338 CG LYS A 43 -29.780 4.308 4.641 1.00 51.50 C \ ATOM 339 CD LYS A 43 -30.322 3.588 3.414 1.00 60.48 C \ ATOM 340 CE LYS A 43 -31.337 2.523 3.795 1.00 58.24 C \ ATOM 341 NZ LYS A 43 -31.865 1.806 2.601 1.00 67.89 N \ ATOM 342 N ASP A 44 -26.486 4.354 6.360 1.00 48.90 N \ ATOM 343 CA ASP A 44 -26.019 3.365 7.327 1.00 48.71 C \ ATOM 344 C ASP A 44 -25.613 4.012 8.646 1.00 53.16 C \ ATOM 345 O ASP A 44 -25.602 3.359 9.688 1.00 55.14 O \ ATOM 346 CB ASP A 44 -24.850 2.557 6.757 1.00 51.47 C \ ATOM 347 CG ASP A 44 -25.238 1.753 5.532 1.00 50.78 C \ ATOM 348 OD1 ASP A 44 -26.450 1.614 5.265 1.00 51.45 O \ ATOM 349 OD2 ASP A 44 -24.325 1.256 4.838 1.00 44.37 O \ ATOM 350 N GLN A 45 -25.279 5.296 8.598 1.00 55.38 N \ ATOM 351 CA AGLN A 45 -24.893 6.012 9.807 0.58 50.62 C \ ATOM 352 CA BGLN A 45 -24.894 6.046 9.788 0.42 50.75 C \ ATOM 353 C GLN A 45 -26.119 6.457 10.597 1.00 56.26 C \ ATOM 354 O GLN A 45 -27.248 6.364 10.119 1.00 59.71 O \ ATOM 355 CB AGLN A 45 -24.007 7.212 9.468 0.58 49.81 C \ ATOM 356 CB BGLN A 45 -24.092 7.293 9.407 0.42 49.77 C \ ATOM 357 CG AGLN A 45 -22.671 6.833 8.842 0.58 49.27 C \ ATOM 358 CG BGLN A 45 -22.647 7.272 9.875 0.42 52.71 C \ ATOM 359 CD AGLN A 45 -21.801 6.009 9.773 0.58 51.22 C \ ATOM 360 CD BGLN A 45 -21.970 8.624 9.734 0.42 51.93 C \ ATOM 361 OE1AGLN A 45 -21.831 6.188 10.990 0.58 54.36 O \ ATOM 362 OE1BGLN A 45 -22.423 9.483 8.977 0.42 45.13 O \ ATOM 363 NE2AGLN A 45 -21.019 5.101 9.201 0.58 55.34 N \ ATOM 364 NE2BGLN A 45 -20.883 8.821 10.472 0.42 54.15 N \ HETATM 365 N NH2 A 100 -25.908 6.886 11.709 1.00 57.88 N \ TER 366 NH2 A 100 \ TER 654 GLU B 72 \ TER 1034 NH2 C 100 \ TER 1337 SER D 74 \ HETATM 1338 S SO4 A 201 -29.699 0.113 -0.738 1.00 79.66 S \ HETATM 1339 O1 SO4 A 201 -30.547 -0.363 -1.851 1.00 72.02 O \ HETATM 1340 O2 SO4 A 201 -28.297 -0.277 -0.990 1.00 79.45 O \ HETATM 1341 O3 SO4 A 201 -30.147 -0.491 0.536 1.00 62.49 O \ HETATM 1342 O4 SO4 A 201 -29.787 1.586 -0.660 1.00 76.92 O \ HETATM 1343 C1 EDO A 202 -20.752 2.251 3.468 1.00 50.93 C \ HETATM 1344 O1 EDO A 202 -21.733 2.037 4.489 1.00 57.16 O \ HETATM 1345 C2 EDO A 202 -21.440 2.298 2.110 1.00 53.62 C \ HETATM 1346 O2 EDO A 202 -20.492 2.669 1.105 1.00 52.54 O \ HETATM 1347 C8 P4G A 203 -14.873 6.672 5.851 1.00 57.18 C \ HETATM 1348 C7 P4G A 203 -14.948 7.524 4.603 1.00 61.87 C \ HETATM 1349 O4 P4G A 203 -16.278 7.516 4.088 1.00 69.75 O \ HETATM 1350 C6 P4G A 203 -16.388 6.713 2.916 1.00 63.31 C \ HETATM 1351 C5 P4G A 203 -17.627 7.122 2.127 1.00 61.63 C \ HETATM 1352 O3 P4G A 203 -17.510 6.671 0.778 1.00 72.64 O \ HETATM 1353 C4 P4G A 203 -16.484 7.367 0.070 1.00 61.68 C \ HETATM 1354 C3 P4G A 203 -15.497 6.368 -0.524 1.00 73.79 C \ HETATM 1355 O2 P4G A 203 -14.409 7.066 -1.126 1.00 79.39 O \ HETATM 1356 C2 P4G A 203 -13.309 6.201 -1.404 1.00 79.52 C \ HETATM 1357 C1 P4G A 203 -12.700 5.719 -0.104 1.00 85.29 C \ HETATM 1358 O HOH A 301 -29.439 -0.098 2.616 1.00 67.41 O \ HETATM 1359 O HOH A 302 -14.370 6.332 -11.009 1.00 55.89 O \ HETATM 1360 O HOH A 303 -9.214 9.573 -44.644 1.00 76.43 O \ HETATM 1361 O HOH A 304 -29.934 1.540 -2.995 1.00 63.38 O \ HETATM 1362 O HOH A 305 -22.201 12.818 -33.065 0.33 59.59 O \ HETATM 1363 O HOH A 306 -22.201 12.818 -49.407 0.33 78.69 O \ HETATM 1364 O HOH A 307 -29.158 11.871 -3.012 1.00 42.51 O \ HETATM 1365 O HOH A 308 -21.011 0.594 -21.827 1.00 72.52 O \ HETATM 1366 O HOH A 309 -22.903 3.115 -12.436 1.00 46.50 O \ HETATM 1367 O HOH A 310 -20.460 1.156 -1.125 1.00 44.79 O \ HETATM 1368 O HOH A 311 -21.647 1.963 -5.414 1.00 45.32 O \ HETATM 1369 O HOH A 312 -22.481 1.155 -3.043 1.00 43.91 O \ HETATM 1370 O HOH A 313 -25.092 1.182 -9.464 1.00 45.31 O \ HETATM 1371 O HOH A 314 -17.814 2.997 -21.909 1.00 64.97 O \ HETATM 1372 O HOH A 315 -22.686 -0.620 6.532 1.00 42.00 O \ HETATM 1373 O HOH A 316 -29.364 3.659 -8.507 1.00 49.77 O \ HETATM 1374 O HOH A 317 -17.613 5.607 9.723 1.00 66.89 O \ HETATM 1375 O HOH A 318 -31.730 11.805 -4.034 1.00 58.04 O \ HETATM 1376 O HOH A 319 -18.590 1.601 -5.403 1.00 57.18 O \ CONECT 353 365 \ CONECT 365 353 \ CONECT 367 368 369 370 \ CONECT 368 367 \ CONECT 369 367 \ CONECT 370 367 \ CONECT 1026 1033 \ CONECT 1033 1026 \ CONECT 1035 1036 1037 1038 \ CONECT 1036 1035 \ CONECT 1037 1035 \ CONECT 1038 1035 \ CONECT 1338 1339 1340 1341 1342 \ CONECT 1339 1338 \ CONECT 1340 1338 \ CONECT 1341 1338 \ CONECT 1342 1338 \ CONECT 1343 1344 1345 \ CONECT 1344 1343 \ CONECT 1345 1343 1346 \ CONECT 1346 1345 \ CONECT 1347 1348 \ CONECT 1348 1347 1349 \ CONECT 1349 1348 1350 \ CONECT 1350 1349 1351 \ CONECT 1351 1350 1352 \ CONECT 1352 1351 1353 \ CONECT 1353 1352 1354 \ CONECT 1354 1353 1355 \ CONECT 1355 1354 1356 \ CONECT 1356 1355 1357 \ CONECT 1357 1356 \ MASTER 347 0 7 4 0 0 6 6 1374 4 32 14 \ END \ """, "5cmzchainA") cmd.hide("all") cmd.color('grey70', "5cmzchainA") cmd.show('cartoon', "5cmzchainA") cmd.center("5cmzchainA", state=0, origin=1) cmd.zoom("5cmzchainA", animate=-1) cmd.select("e5cmzA1", "c. A & i. 3-100") cmd.color("red", "e5cmzA1") cmd.disable("e5cmzA1")