cmd.read_pdbstr("""\ HEADER FLUORESCENT PROTEIN 12-MAY-21 7OIN \ TITLE CRYSTAL STRUCTURE OF LSSMSCARLET - A GENETICALLY ENCODED RED \ TITLE 2 FLUORESCENT PROTEIN WITH A LARGE STOKES SHIFT \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: LSSMSCARLET - GENETICALLY ENCODED RED FLUORESCENT PROTEINS \ COMPND 3 WITH A LARGE STOKES SHIFT; \ COMPND 4 CHAIN: B; \ COMPND 5 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: DISCOSOMA SP.; \ SOURCE 3 ORGANISM_TAXID: 86600; \ SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 \ KEYWDS FLUORESCENT PROTEIN, MSCARLET \ EXPDTA X-RAY DIFFRACTION \ AUTHOR K.M.BOYKO,A.Y.NIKOLAEVA,P.V.DOROVATOVSKII,O.M.SUBACH,A.V.VLASKINA, \ AUTHOR 2 Y.K.AGAPOVA,O.I.IVASHKINA,V.O.POPOV,F.V.SUBACH \ REVDAT 3 31-JAN-24 7OIN 1 REMARK \ REVDAT 2 14-SEP-22 7OIN 1 COMPND SOURCE REMARK DBREF \ REVDAT 2 2 1 SEQADV SEQRES HET HETNAM \ REVDAT 2 3 1 HETSYN FORMUL HELIX SHEET \ REVDAT 2 4 1 LINK ATOM \ REVDAT 1 16-FEB-22 7OIN 0 \ JRNL AUTH O.M.SUBACH,A.V.VLASKINA,Y.K.AGAPOVA,P.V.DOROVATOVSKII, \ JRNL AUTH 2 A.Y.NIKOLAEVA,O.I.IVASHKINA,V.O.POPOV,K.D.PIATKEVICH, \ JRNL AUTH 3 M.G.KHRENOVA,T.A.SMIRNOVA,K.M.BOYKO,F.V.SUBACH \ JRNL TITL LSSMSCARLET, DCYRFP2S, DCYOFP2S AND CRISPRED2S, GENETICALLY \ JRNL TITL 2 ENCODED RED FLUORESCENT PROTEINS WITH A LARGE STOKES SHIFT. \ JRNL REF INT J MOL SCI V. 22 2021 \ JRNL REFN ESSN 1422-0067 \ JRNL PMID 34884694 \ JRNL DOI 10.3390/IJMS222312887 \ REMARK 2 \ REMARK 2 RESOLUTION. 1.40 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.8.0267 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.43 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 \ REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 \ REMARK 3 NUMBER OF REFLECTIONS : 40220 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 \ REMARK 3 R VALUE (WORKING SET) : 0.164 \ REMARK 3 FREE R VALUE : 0.190 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 \ REMARK 3 FREE R VALUE TEST SET COUNT : 2021 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 2994 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 \ REMARK 3 BIN FREE R VALUE SET COUNT : 159 \ REMARK 3 BIN FREE R VALUE : 0.2520 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 1801 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 7 \ REMARK 3 SOLVENT ATOMS : 272 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.78 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : -0.46000 \ REMARK 3 B22 (A**2) : -0.09000 \ REMARK 3 B33 (A**2) : 0.63000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : -0.31000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 0.061 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.223 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1922 ; 0.016 ; 0.013 \ REMARK 3 BOND LENGTHS OTHERS (A): 1797 ; 0.007 ; 0.017 \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2590 ; 2.164 ; 1.672 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): 4162 ; 1.572 ; 1.590 \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 227 ; 7.842 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 114 ;31.387 ;21.404 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 347 ;12.355 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;19.478 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 242 ; 0.125 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2135 ; 0.015 ; 0.020 \ REMARK 3 GENERAL PLANES OTHERS (A): 437 ; 0.005 ; 0.020 \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : MASK \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY \ REMARK 4 \ REMARK 4 7OIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-21. \ REMARK 100 THE DEPOSITION ID IS D_1292115810. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 12-APR-21 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : NULL \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : KURCHATOV SNC \ REMARK 200 BEAMLINE : K4.4 \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.75 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS \ REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42242 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 \ REMARK 200 RESOLUTION RANGE LOW (A) : 34.430 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 \ REMARK 200 DATA REDUNDANCY : 6.000 \ REMARK 200 R MERGE (I) : 0.13700 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 7.2000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 \ REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 \ REMARK 200 R MERGE FOR SHELL (I) : 0.61500 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: MOLREP \ REMARK 200 STARTING MODEL: 5LK4 \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 30.77 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.78 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LITHIUM SULFATE, 0.1M AMMONIUM \ REMARK 280 ACETATE, 0.1 M BIS-TRIS PH 6.5, 23% PEG 3350, VAPOR DIFFUSION, \ REMARK 280 HANGING DROP, TEMPERATURE 288K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y,-Z \ REMARK 290 3555 X+1/2,Y+1/2,Z \ REMARK 290 4555 -X+1/2,Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.25950 \ REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.67850 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.25950 \ REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.67850 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1190 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 10880 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 375 \ REMARK 375 SPECIAL POSITION \ REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS \ REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL \ REMARK 375 POSITIONS. \ REMARK 375 \ REMARK 375 ATOM RES CSSEQI \ REMARK 375 HOH B 446 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH B 608 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH B 641 LIES ON A SPECIAL POSITION. \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 MET B -41 \ REMARK 465 GLY B -40 \ REMARK 465 GLY B -39 \ REMARK 465 SER B -38 \ REMARK 465 HIS B -37 \ REMARK 465 HIS B -36 \ REMARK 465 HIS B -35 \ REMARK 465 HIS B -34 \ REMARK 465 HIS B -33 \ REMARK 465 HIS B -32 \ REMARK 465 GLY B -31 \ REMARK 465 MET B -30 \ REMARK 465 ALA B -29 \ REMARK 465 SER B -28 \ REMARK 465 MET B -27 \ REMARK 465 THR B -26 \ REMARK 465 GLY B -25 \ REMARK 465 GLY B -24 \ REMARK 465 GLN B -23 \ REMARK 465 GLN B -22 \ REMARK 465 MET B -21 \ REMARK 465 GLY B -20 \ REMARK 465 ARG B -19 \ REMARK 465 ASP B -18 \ REMARK 465 LEU B -17 \ REMARK 465 TYR B -16 \ REMARK 465 ASP B -15 \ REMARK 465 ASP B -14 \ REMARK 465 ASP B -13 \ REMARK 465 ASP B -12 \ REMARK 465 LYS B -11 \ REMARK 465 GLU B -10 \ REMARK 465 ASN B -9 \ REMARK 465 LEU B -8 \ REMARK 465 TYR B -7 \ REMARK 465 PHE B -6 \ REMARK 465 GLN B -5 \ REMARK 465 GLY B -4 \ REMARK 465 HIS B -3 \ REMARK 465 MET B -2 \ REMARK 465 ARG B -1 \ REMARK 465 SER B 0 \ REMARK 465 MET B 1 \ REMARK 465 GLY B 227 \ REMARK 465 LYS B 233 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 GLU B 33 CG CD OE1 OE2 \ REMARK 470 LYS B 94 CD CE NZ \ REMARK 470 LYS B 164 CE NZ \ REMARK 470 ASP B 171 CG OD1 OD2 \ REMARK 470 GLU B 208 CG CD OE1 OE2 \ REMARK 470 MET B 228 CG SD CE \ REMARK 470 GLU B 230 CG CD OE1 OE2 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION \ REMARK 500 GLU B 155 CD GLU B 155 OE1 -0.069 \ REMARK 500 GLU B 220 CD GLU B 220 OE1 -0.101 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 ARG B 37 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES \ REMARK 500 ARG B 37 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES \ REMARK 500 ARG B 180 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES \ REMARK 500 ARG B 180 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES \ REMARK 500 ARG B 180 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 PRO B 56 35.28 -88.98 \ REMARK 500 PHE B 74 53.13 -110.05 \ REMARK 500 MET B 143 45.17 -141.93 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 NA B 302 NA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 HOH B 498 O \ REMARK 620 2 HOH B 614 O 108.8 \ REMARK 620 N 1 \ DBREF 7OIN B 8 223 UNP Q9U6Y8 RFP_DISSP 7 221 \ SEQADV 7OIN MET B -41 UNP Q9U6Y8 INITIATING METHIONINE \ SEQADV 7OIN GLY B -40 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B -39 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN SER B -38 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B -37 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B -36 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B -35 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B -34 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B -33 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B -32 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B -31 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN MET B -30 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ALA B -29 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN SER B -28 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN MET B -27 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN THR B -26 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B -25 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B -24 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLN B -23 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLN B -22 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN MET B -21 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B -20 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ARG B -19 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ASP B -18 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN LEU B -17 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN TYR B -16 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ASP B -15 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ASP B -14 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ASP B -13 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ASP B -12 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN LYS B -11 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLU B -10 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ASN B -9 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN LEU B -8 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN TYR B -7 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN PHE B -6 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLN B -5 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B -4 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B -3 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN MET B -2 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ARG B -1 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN SER B 0 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN MET B 1 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN VAL B 2 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN SER B 3 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN LYS B 4 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B 5 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLU B 6 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ALA B 7 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN HIS B 18 UNP Q9U6Y8 ARG 17 ENGINEERED MUTATION \ SEQADV 7OIN SER B 22 UNP Q9U6Y8 THR 21 ENGINEERED MUTATION \ SEQADV 7OIN MET B 23 UNP Q9U6Y8 VAL 22 ENGINEERED MUTATION \ SEQADV 7OIN THR B 42 UNP Q9U6Y8 HIS 41 ENGINEERED MUTATION \ SEQADV 7OIN GLN B 43 UNP Q9U6Y8 ASN 42 ENGINEERED MUTATION \ SEQADV 7OIN ALA B 45 UNP Q9U6Y8 VAL 44 ENGINEERED MUTATION \ SEQADV 7OIN SER B 58 UNP Q9U6Y8 ALA 57 ENGINEERED MUTATION \ SEQADV 7OIN NRQ B 67 UNP Q9U6Y8 GLN 66 CHROMOPHORE \ SEQADV 7OIN NRQ B 67 UNP Q9U6Y8 TYR 67 CHROMOPHORE \ SEQADV 7OIN NRQ B 67 UNP Q9U6Y8 GLY 68 CHROMOPHORE \ SEQADV 7OIN ARG B 72 UNP Q9U6Y8 LYS 70 ENGINEERED MUTATION \ SEQADV 7OIN ALA B 73 UNP Q9U6Y8 VAL 71 ENGINEERED MUTATION \ SEQADV 7OIN PHE B 74 UNP Q9U6Y8 TYR 72 ENGINEERED MUTATION \ SEQADV 7OIN ILE B 75 UNP Q9U6Y8 VAL 73 ENGINEERED MUTATION \ SEQADV 7OIN HIS B 85 UNP Q9U6Y8 LYS 83 ENGINEERED MUTATION \ SEQADV 7OIN GLN B 87 UNP Q9U6Y8 LEU 85 ENGINEERED MUTATION \ SEQADV 7OIN ALA B 106 UNP Q9U6Y8 VAL 104 ENGINEERED MUTATION \ SEQADV 7OIN THR B 113 UNP Q9U6Y8 SER 111 ENGINEERED MUTATION \ SEQADV 7OIN GLU B 116 UNP Q9U6Y8 GLN 114 ENGINEERED MUTATION \ SEQADV 7OIN THR B 119 UNP Q9U6Y8 CYS 117 ENGINEERED MUTATION \ SEQADV 7OIN LEU B 120 UNP Q9U6Y8 PHE 118 ENGINEERED MUTATION \ SEQADV 7OIN GLU B 123 UNP Q9U6Y8 LYS 121 ENGINEERED MUTATION \ SEQADV 7OIN LEU B 126 UNP Q9U6Y8 PHE 124 ENGINEERED MUTATION \ SEQADV 7OIN ARG B 127 UNP Q9U6Y8 ILE 125 ENGINEERED MUTATION \ SEQADV 7OIN THR B 129 UNP Q9U6Y8 VAL 127 ENGINEERED MUTATION \ SEQADV 7OIN PRO B 133 UNP Q9U6Y8 SER 131 ENGINEERED MUTATION \ SEQADV 7OIN LEU B 145 UNP Q9U6Y8 TRP 143 ENGINEERED MUTATION \ SEQADV 7OIN ASP B 148 UNP Q9U6Y8 SER 146 ENGINEERED MUTATION \ SEQADV 7OIN GLU B 155 UNP Q9U6Y8 ARG 153 ENGINEERED MUTATION \ SEQADV 7OIN ASP B 162 UNP Q9U6Y8 GLU 160 ENGINEERED MUTATION \ SEQADV 7OIN LYS B 164 UNP Q9U6Y8 HIS 162 ENGINEERED MUTATION \ SEQADV 7OIN MET B 165 UNP Q9U6Y8 LYS 163 ENGINEERED MUTATION \ SEQADV 7OIN ARG B 168 UNP Q9U6Y8 LYS 166 ENGINEERED MUTATION \ SEQADV 7OIN ARG B 174 UNP Q9U6Y8 HIS 172 ENGINEERED MUTATION \ SEQADV 7OIN ALA B 177 UNP Q9U6Y8 VAL 175 ENGINEERED MUTATION \ SEQADV 7OIN ASP B 178 UNP Q9U6Y8 GLU 176 ENGINEERED MUTATION \ SEQADV 7OIN VAL B 179 UNP Q9U6Y8 PHE 177 ENGINEERED MUTATION \ SEQADV 7OIN ARG B 180 UNP Q9U6Y8 LYS 178 ENGINEERED MUTATION \ SEQADV 7OIN THR B 181 UNP Q9U6Y8 SER 179 ENGINEERED MUTATION \ SEQADV 7OIN THR B 182 UNP Q9U6Y8 ILE 180 ENGINEERED MUTATION \ SEQADV 7OIN LYS B 184 UNP Q9U6Y8 MET 182 ENGINEERED MUTATION \ SEQADV 7OIN MET B 191 UNP Q9U6Y8 LEU 189 ENGINEERED MUTATION \ SEQADV 7OIN ALA B 194 UNP Q9U6Y8 TYR 192 ENGINEERED MUTATION \ SEQADV 7OIN ASN B 196 UNP Q9U6Y8 TYR 194 ENGINEERED MUTATION \ SEQADV 7OIN ARG B 199 UNP Q9U6Y8 SER 197 ENGINEERED MUTATION \ SEQADV 7OIN VAL B 212 UNP Q9U6Y8 ILE 210 ENGINEERED MUTATION \ SEQADV 7OIN SER B 219 UNP Q9U6Y8 THR 217 ENGINEERED MUTATION \ SEQADV 7OIN SER B 224 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN THR B 225 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B 226 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLY B 227 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN MET B 228 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN ASP B 229 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN GLU B 230 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN LEU B 231 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN TYR B 232 UNP Q9U6Y8 EXPRESSION TAG \ SEQADV 7OIN LYS B 233 UNP Q9U6Y8 EXPRESSION TAG \ SEQRES 1 B 272 MET GLY GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA \ SEQRES 2 B 272 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR \ SEQRES 3 B 272 ASP ASP ASP ASP LYS GLU ASN LEU TYR PHE GLN GLY HIS \ SEQRES 4 B 272 MET ARG SER MET VAL SER LYS GLY GLU ALA VAL ILE LYS \ SEQRES 5 B 272 GLU PHE MET ARG PHE LYS VAL HIS MET GLU GLY SER MET \ SEQRES 6 B 272 ASN GLY HIS GLU PHE GLU ILE GLU GLY GLU GLY GLU GLY \ SEQRES 7 B 272 ARG PRO TYR GLU GLY THR GLN THR ALA LYS LEU LYS VAL \ SEQRES 8 B 272 THR LYS GLY GLY PRO LEU PRO PHE SER TRP ASP ILE LEU \ SEQRES 9 B 272 SER PRO GLN PHE NRQ SER ARG ALA PHE ILE LYS HIS PRO \ SEQRES 10 B 272 ALA ASP ILE PRO ASP TYR HIS LYS GLN SER PHE PRO GLU \ SEQRES 11 B 272 GLY PHE LYS TRP GLU ARG VAL MET ASN PHE GLU ASP GLY \ SEQRES 12 B 272 GLY ALA VAL THR VAL THR GLN ASP THR SER LEU GLU ASP \ SEQRES 13 B 272 GLY THR LEU ILE TYR GLU VAL LYS LEU ARG GLY THR ASN \ SEQRES 14 B 272 PHE PRO PRO ASP GLY PRO VAL MET GLN LYS LYS THR MET \ SEQRES 15 B 272 GLY LEU GLU ALA ASP THR GLU ARG LEU TYR PRO GLU ASP \ SEQRES 16 B 272 GLY VAL LEU LYS GLY ASP ILE LYS MET ALA LEU ARG LEU \ SEQRES 17 B 272 LYS ASP GLY GLY ARG TYR LEU ALA ASP VAL ARG THR THR \ SEQRES 18 B 272 TYR LYS ALA LYS LYS PRO VAL GLN MET PRO GLY ALA TYR \ SEQRES 19 B 272 ASN VAL ASP ARG LYS LEU ASP ILE THR SER HIS ASN GLU \ SEQRES 20 B 272 ASP TYR THR VAL VAL GLU GLN TYR GLU ARG SER GLU GLY \ SEQRES 21 B 272 ARG HIS SER THR GLY GLY MET ASP GLU LEU TYR LYS \ MODRES 7OIN NRQ B 67 GLN CHROMOPHORE \ MODRES 7OIN NRQ B 67 TYR CHROMOPHORE \ MODRES 7OIN NRQ B 67 GLY CHROMOPHORE \ HET NRQ B 67 23 \ HET SO4 B 301 5 \ HET NA B 302 1 \ HET NA B 303 1 \ HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) \ HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- \ HETNAM 3 NRQ YL}ACETIC ACID \ HETNAM SO4 SULFATE ION \ HETNAM NA SODIUM ION \ HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) \ FORMUL 1 NRQ C16 H17 N3 O4 S \ FORMUL 2 SO4 O4 S 2- \ FORMUL 3 NA 2(NA 1+) \ FORMUL 5 HOH *272(H2 O) \ HELIX 1 AA1 GLY B 5 ILE B 9 5 5 \ HELIX 2 AA2 SER B 58 PHE B 66 5 9 \ HELIX 3 AA3 HIS B 85 PHE B 89 5 5 \ SHEET 1 AA113 THR B 142 LEU B 145 0 \ SHEET 2 AA113 VAL B 158 LEU B 169 -1 O ARG B 168 N GLY B 144 \ SHEET 3 AA113 ARG B 174 ALA B 185 -1 O THR B 181 N GLY B 161 \ SHEET 4 AA113 PHE B 93 PHE B 101 -1 N LYS B 94 O LYS B 184 \ SHEET 5 AA113 ALA B 106 GLU B 116 -1 O VAL B 109 N ARG B 97 \ SHEET 6 AA113 THR B 119 THR B 129 -1 O THR B 119 N GLU B 116 \ SHEET 7 AA113 MET B 13 MET B 23 1 N SER B 22 O GLY B 128 \ SHEET 8 AA113 HIS B 26 ARG B 37 -1 O PHE B 28 N GLY B 21 \ SHEET 9 AA113 THR B 42 LYS B 51 -1 O LYS B 48 N GLU B 31 \ SHEET 10 AA113 VAL B 212 ARG B 222 -1 O VAL B 213 N LEU B 47 \ SHEET 11 AA113 TYR B 195 HIS B 206 -1 N ASN B 196 O ARG B 222 \ SHEET 12 AA113 ASP B 148 GLU B 155 -1 N LEU B 152 O TYR B 195 \ SHEET 13 AA113 VAL B 158 LEU B 169 -1 O ASP B 162 N ARG B 151 \ LINK C PHE B 66 N1 NRQ B 67 1555 1555 1.28 \ LINK C3 NRQ B 67 N SER B 71 1555 1555 1.34 \ LINK OE2 GLU B 217 NA NA B 303 1555 1555 3.03 \ LINK NA NA B 302 O HOH B 498 1555 1555 3.00 \ LINK NA NA B 302 O HOH B 614 1555 1555 2.72 \ CISPEP 1 GLY B 53 PRO B 54 0 -10.85 \ CISPEP 2 PHE B 89 PRO B 90 0 -2.43 \ CRYST1 84.519 45.357 59.042 90.00 102.34 90.00 C 1 2 1 4 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.011832 0.000000 0.002588 0.00000 \ SCALE2 0.000000 0.022047 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.017337 0.00000 \ TER 1874 TYR B 232 \ CONECT 511 520 \ CONECT 520 511 525 \ CONECT 521 522 \ CONECT 522 521 523 \ CONECT 523 522 524 \ CONECT 524 523 525 \ CONECT 525 520 524 526 \ CONECT 526 525 527 539 \ CONECT 527 526 536 \ CONECT 528 531 \ CONECT 529 530 534 \ CONECT 530 529 531 \ CONECT 531 528 530 532 \ CONECT 532 531 533 \ CONECT 533 532 534 \ CONECT 534 529 533 535 \ CONECT 535 534 536 \ CONECT 536 527 535 537 \ CONECT 537 536 538 539 \ CONECT 538 537 \ CONECT 539 526 537 540 \ CONECT 540 539 541 \ CONECT 541 540 542 543 \ CONECT 542 541 \ CONECT 543 541 \ CONECT 1762 1881 \ CONECT 1875 1876 1877 1878 1879 \ CONECT 1876 1875 \ CONECT 1877 1875 \ CONECT 1878 1875 \ CONECT 1879 1875 \ CONECT 1880 1979 2095 \ CONECT 1881 1762 \ CONECT 1979 1880 \ CONECT 2095 1880 \ MASTER 389 0 4 3 13 0 0 6 2080 1 35 21 \ END \ """, "7oinchainA") cmd.hide("all") cmd.color('grey70', "7oinchainA") cmd.show('cartoon', "7oinchainA") cmd.center("7oinchainA", state=0, origin=1) cmd.zoom("7oinchainA", animate=-1) cmd.select("e7oinA1", "c. A & i. 2-231") cmd.color("red", "e7oinA1") cmd.disable("e7oinA1")