cmd.read_pdbstr("""\ HEADER HYDROLASE 05-SEP-01 1JX2 \ TITLE CRYSTAL STRUCTURE OF THE NUCLEOTIDE-FREE DYNAMIN A GTPASE DOMAIN, \ TITLE 2 DETERMINED AS MYOSIN FUSION \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: MYOSIN-2 HEAVY CHAIN,DYNAMIN-A; \ COMPND 3 CHAIN: A; \ COMPND 4 FRAGMENT: CATALYTIC DOMAIN; \ COMPND 5 SYNONYM: MYOSIN II HEAVY CHAIN; \ COMPND 6 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; \ SOURCE 3 ORGANISM_COMMON: SLIME MOLD; \ SOURCE 4 ORGANISM_TAXID: 44689; \ SOURCE 5 GENE: MHCA, DDB_G0286355, DYMA, DDB_G0277849; \ SOURCE 6 EXPRESSION_SYSTEM: DICTYOSTELIUM DISCOIDEUM; \ SOURCE 7 EXPRESSION_SYSTEM_TAXID: 44689; \ SOURCE 8 EXPRESSION_SYSTEM_STRAIN: AX3-ORF+; \ SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; \ SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PDXA-HC; \ SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PM3 \ KEYWDS DYNAMIN, GTPASE, MYOSIN, FUSION-PROTEIN, DICTYOSTELIUM, HYDROLASE \ EXPDTA X-RAY DIFFRACTION \ AUTHOR H.H.NIEMANN,M.L.W.KNETSCH,A.SCHERER,D.J.MANSTEIN,F.J.KULL \ REVDAT 9 30-OCT-24 1JX2 1 REMARK \ REVDAT 8 16-AUG-23 1JX2 1 HETSYN \ REVDAT 7 29-JUL-20 1JX2 1 COMPND REMARK HETNAM LINK \ REVDAT 7 2 1 SITE \ REVDAT 6 04-OCT-17 1JX2 1 REMARK \ REVDAT 5 31-MAY-17 1JX2 1 COMPND SOURCE REMARK SEQADV \ REVDAT 5 2 1 SEQRES ATOM \ REVDAT 4 28-JUL-09 1JX2 1 HET HETATM \ REVDAT 3 24-FEB-09 1JX2 1 VERSN \ REVDAT 2 01-APR-03 1JX2 1 JRNL \ REVDAT 1 07-NOV-01 1JX2 0 \ JRNL AUTH H.H.NIEMANN,M.L.KNETSCH,A.SCHERER,D.J.MANSTEIN,F.J.KULL \ JRNL TITL CRYSTAL STRUCTURE OF A DYNAMIN GTPASE DOMAIN IN BOTH \ JRNL TITL 2 NUCLEOTIDE-FREE AND GDP-BOUND FORMS. \ JRNL REF EMBO J. V. 20 5813 2001 \ JRNL REFN ISSN 0261-4189 \ JRNL PMID 11689422 \ JRNL DOI 10.1093/EMBOJ/20.21.5813 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.30 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : CNS \ REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- \ REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, \ REMARK 3 : READ,RICE,SIMONSON,WARREN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : NULL \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.96 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 \ REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 380278.230 \ REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 \ REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.1 \ REMARK 3 NUMBER OF REFLECTIONS : 52742 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : EVERY-NTH \ REMARK 3 R VALUE (WORKING SET) : 0.197 \ REMARK 3 FREE R VALUE : 0.255 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.000 \ REMARK 3 FREE R VALUE TEST SET COUNT : 3692 \ REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 6 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.44 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.80 \ REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7879 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 \ REMARK 3 BIN FREE R VALUE : 0.2980 \ REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.00 \ REMARK 3 BIN FREE R VALUE TEST SET COUNT : 593 \ REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 8297 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 40 \ REMARK 3 SOLVENT ATOMS : 376 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : 22.60 \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.90 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 0.63000 \ REMARK 3 B22 (A**2) : -1.61000 \ REMARK 3 B33 (A**2) : 0.98000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : -0.24000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 \ REMARK 3 ESD FROM SIGMAA (A) : 0.18 \ REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 \ REMARK 3 \ REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.34 \ REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 BOND LENGTHS (A) : 0.008 \ REMARK 3 BOND ANGLES (DEGREES) : 1.200 \ REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 \ REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA \ REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELING. \ REMARK 3 METHOD USED : FLAT MODEL \ REMARK 3 KSOL : 0.37 \ REMARK 3 BSOL : 44.39 \ REMARK 3 \ REMARK 3 NCS MODEL : NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT \ REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL \ REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL \ REMARK 3 \ REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM \ REMARK 3 PARAMETER FILE 2 : ION.PARAM \ REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM \ REMARK 3 PARAMETER FILE 4 : NULL \ REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP \ REMARK 3 TOPOLOGY FILE 2 : ION.TOP \ REMARK 3 TOPOLOGY FILE 3 : WATER_REP.TOP \ REMARK 3 TOPOLOGY FILE 4 : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 1JX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-01. \ REMARK 100 THE DEPOSITION ID IS D_1000014285. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 13-OCT-00 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 8.5 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : ELETTRA \ REMARK 200 BEAMLINE : 5.2R \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : AREA DETECTOR \ REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR \ REMARK 200 DATA SCALING SOFTWARE : XDS \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52742 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 \ REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 \ REMARK 200 DATA REDUNDANCY : 3.700 \ REMARK 200 R MERGE (I) : 0.06700 \ REMARK 200 R SYM (I) : 0.05000 \ REMARK 200 FOR THE DATA SET : 19.3000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 \ REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 \ REMARK 200 R MERGE FOR SHELL (I) : 0.22000 \ REMARK 200 R SYM FOR SHELL (I) : 0.21500 \ REMARK 200 FOR SHELL : 4.980 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: CNS \ REMARK 200 STARTING MODEL: PDB ENTRY 1G8X, MYOSIN II CATALYTIC DOMAIN \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 50.00 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, TRIS, POTASSIUM CHLORIDE, \ REMARK 280 MAGNESIUM CHLORIDE, GLUCOSE, METHYL-PROPANE-DIOL, DITHIOTHREITOL, \ REMARK 280 EGTA, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.02000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 MET A 1 \ REMARK 465 HIS A 2 \ REMARK 465 HIS A 3 \ REMARK 465 HIS A 4 \ REMARK 465 HIS A 5 \ REMARK 465 HIS A 6 \ REMARK 465 HIS A 7 \ REMARK 465 HIS A 8 \ REMARK 465 ASP A 9 \ REMARK 465 GLY A 10 \ REMARK 465 THR A 11 \ REMARK 465 GLU A 12 \ REMARK 465 GLY A 31 \ REMARK 465 ASP A 32 \ REMARK 465 SER A 33 \ REMARK 465 ASP A 34 \ REMARK 465 LEU A 35 \ REMARK 465 ARG A 213 \ REMARK 465 ASN A 214 \ REMARK 465 GLN A 215 \ REMARK 465 ALA A 216 \ REMARK 465 ASN A 217 \ REMARK 465 GLY A 218 \ REMARK 465 PRO A 782 \ REMARK 465 ARG A 783 \ REMARK 465 GLY A 784 \ REMARK 465 SER A 785 \ REMARK 465 ARG A 837 \ REMARK 465 GLY A 838 \ REMARK 465 SER A 839 \ REMARK 465 GLY A 840 \ REMARK 465 ILE A 841 \ REMARK 465 VAL A 842 \ REMARK 465 THR A 843 \ REMARK 465 ARG A 844 \ REMARK 465 ARG A 893 \ REMARK 465 MET A 894 \ REMARK 465 THR A 895 \ REMARK 465 GLY A 896 \ REMARK 465 LYS A 897 \ REMARK 465 ASN A 898 \ REMARK 465 LYS A 899 \ REMARK 465 GLY A 900 \ REMARK 465 THR A 927 \ REMARK 465 LYS A 928 \ REMARK 465 VAL A 929 \ REMARK 465 PRO A 930 \ REMARK 465 VAL A 931 \ REMARK 465 GLY A 932 \ REMARK 465 ASP A 933 \ REMARK 465 GLN A 934 \ REMARK 465 PRO A 935 \ REMARK 465 ASP A 1092 \ REMARK 465 VAL A 1093 \ REMARK 465 GLN A 1094 \ REMARK 465 GLY A 1095 \ REMARK 465 GLU A 1096 \ REMARK 465 LEU A 1097 \ REMARK 465 SER A 1098 \ REMARK 465 THR A 1099 \ REMARK 465 TYR A 1100 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 LYS A 29 CG CD CE NZ \ REMARK 470 GLN A 30 CG CD OE1 NE2 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 GLU A 54 71.10 -109.57 \ REMARK 500 THR A 67 -153.14 -107.13 \ REMARK 500 ASP A 69 49.55 -143.74 \ REMARK 500 GLN A 79 120.42 178.19 \ REMARK 500 ASN A 89 72.13 -112.50 \ REMARK 500 ILE A 94 -18.39 -47.91 \ REMARK 500 GLU A 104 41.30 -94.26 \ REMARK 500 PRO A 144 60.37 -66.77 \ REMARK 500 HIS A 165 147.84 -170.34 \ REMARK 500 THR A 285 -5.23 73.34 \ REMARK 500 ALA A 411 72.25 -116.45 \ REMARK 500 SER A 476 -162.68 -115.29 \ REMARK 500 PRO A 547 -89.59 -37.61 \ REMARK 500 ASN A 548 45.77 -101.18 \ REMARK 500 LYS A 634 105.79 -49.44 \ REMARK 500 ALA A 676 56.38 34.90 \ REMARK 500 LYS A 677 69.39 -159.77 \ REMARK 500 ARG A 700 7.11 -63.26 \ REMARK 500 LEU A 780 21.22 -69.40 \ REMARK 500 ARG A 832 143.48 -174.38 \ REMARK 500 PHE A 834 2.89 -166.04 \ REMARK 500 PRO A 873 -38.82 -31.65 \ REMARK 500 ASN A 964 42.46 -94.07 \ REMARK 500 THR A 965 53.94 -154.60 \ REMARK 500 ASP A 966 -156.70 39.42 \ REMARK 500 LEU A 967 -36.28 -133.24 \ REMARK 500 SER A 970 -120.90 -70.82 \ REMARK 500 ASP A 971 -64.43 -171.39 \ REMARK 500 MET A 996 -92.34 -70.40 \ REMARK 500 LYS A 998 -76.99 -48.64 \ REMARK 500 ARG A1009 -44.07 -141.23 \ REMARK 500 ILE A1011 90.68 -161.99 \ REMARK 500 LYS A1032 110.76 -39.50 \ REMARK 500 ARG A1035 20.03 49.35 \ REMARK 500 GLU A1036 -36.26 -136.00 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 MG A1202 MG \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 THR A 197 OG1 \ REMARK 620 2 SER A 248 OG 84.0 \ REMARK 620 3 ADP A1203 O2B 94.4 176.1 \ REMARK 620 4 HOH A1308 O 82.6 82.2 101.0 \ REMARK 620 5 HOH A1347 O 171.6 88.6 93.3 92.6 \ REMARK 620 6 HOH A1360 O 92.6 89.7 86.9 171.0 91.2 \ REMARK 620 N 1 2 3 4 5 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 1JWY RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF THE DYNAMIN A GTPASE DOMAIN COMPLEXED WITH GDP, \ REMARK 900 DETERMINED AS MYOSIN FUSION \ REMARK 999 \ REMARK 999 SEQUENCE \ REMARK 999 ACCORDING TO THE AUTHOR, ELECTRON DENSITY MAP CONFIRM \ REMARK 999 RESIDUE 260 TO BE SER AND RESIDUE 323 TO BE CYS. \ DBREF 1JX2 A 14 776 UNP P08799 MYS2_DICDI 3 765 \ DBREF 1JX2 A 786 1100 UNP Q94464 DYNA_DICDI 2 316 \ SEQADV 1JX2 MET A 1 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 HIS A 2 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 HIS A 3 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 HIS A 4 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 HIS A 5 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 HIS A 6 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 HIS A 7 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 HIS A 8 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 ASP A 9 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 GLY A 10 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 THR A 11 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 GLU A 12 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 ASP A 13 UNP P08799 EXPRESSION TAG \ SEQADV 1JX2 THR A 777 UNP P08799 LINKER \ SEQADV 1JX2 ARG A 778 UNP P08799 LINKER \ SEQADV 1JX2 GLY A 779 UNP P08799 LINKER \ SEQADV 1JX2 LEU A 780 UNP P08799 LINKER \ SEQADV 1JX2 VAL A 781 UNP P08799 LINKER \ SEQADV 1JX2 PRO A 782 UNP P08799 LINKER \ SEQADV 1JX2 ARG A 783 UNP P08799 LINKER \ SEQADV 1JX2 GLY A 784 UNP P08799 LINKER \ SEQADV 1JX2 SER A 785 UNP P08799 LINKER \ SEQRES 1 A 1100 MET HIS HIS HIS HIS HIS HIS HIS ASP GLY THR GLU ASP \ SEQRES 2 A 1100 PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS TYR LEU \ SEQRES 3 A 1100 LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS LEU THR \ SEQRES 4 A 1100 VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO ASP PRO \ SEQRES 5 A 1100 LYS GLU ARG ASP SER TYR GLU CYS GLY GLU ILE VAL SER \ SEQRES 6 A 1100 GLU THR SER ASP SER PHE THR PHE LYS THR VAL ASP GLY \ SEQRES 7 A 1100 GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN GLN ARG \ SEQRES 8 A 1100 ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SER GLU \ SEQRES 9 A 1100 LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS ASN LEU \ SEQRES 10 A 1100 ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR TYR SER \ SEQRES 11 A 1100 GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS ARG ILE \ SEQRES 12 A 1100 PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE LYS GLY \ SEQRES 13 A 1100 ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE ALA ILE \ SEQRES 14 A 1100 SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP ARG GLN \ SEQRES 15 A 1100 ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY ALA GLY \ SEQRES 16 A 1100 LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR LEU ALA \ SEQRES 17 A 1100 SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER GLY VAL \ SEQRES 18 A 1100 LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE LEU GLU \ SEQRES 19 A 1100 ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN ASN SER \ SEQRES 20 A 1100 SER ARG PHE GLY LYS PHE ILE GLU ILE GLN PHE ASN SER \ SEQRES 21 A 1100 ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER TYR LEU \ SEQRES 22 A 1100 LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU THR GLU \ SEQRES 23 A 1100 ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA GLY ALA \ SEQRES 24 A 1100 THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA GLY PRO \ SEQRES 25 A 1100 GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS VAL ASP \ SEQRES 26 A 1100 ILE LYS GLY VAL SER ASP SER GLU GLU PHE LYS ILE THR \ SEQRES 27 A 1100 ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN GLU GLU \ SEQRES 28 A 1100 GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE LEU HIS \ SEQRES 29 A 1100 LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY GLU GLY \ SEQRES 30 A 1100 ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA ALA SER \ SEQRES 31 A 1100 THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU LYS ALA \ SEQRES 32 A 1100 LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP LEU VAL \ SEQRES 33 A 1100 ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SER ARG \ SEQRES 34 A 1100 ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU PHE LEU \ SEQRES 35 A 1100 TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS GLN GLU \ SEQRES 36 A 1100 ARG LYS ALA TYR PHE ILE GLY VAL LEU ASP ILE SER GLY \ SEQRES 37 A 1100 PHE GLU ILE PHE LYS VAL ASN SER PHE GLU GLN LEU CYS \ SEQRES 38 A 1100 ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE PHE ASN \ SEQRES 39 A 1100 HIS HIS MET PHE LYS LEU GLU GLN GLU GLU TYR LEU LYS \ SEQRES 40 A 1100 GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY LEU ASP \ SEQRES 41 A 1100 SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG GLN PRO \ SEQRES 42 A 1100 PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER VAL PHE \ SEQRES 43 A 1100 PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS LEU HIS \ SEQRES 44 A 1100 SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU GLU PRO \ SEQRES 45 A 1100 ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS TYR ALA \ SEQRES 46 A 1100 GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU GLU LYS \ SEQRES 47 A 1100 ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU CYS PHE \ SEQRES 48 A 1100 LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU PHE ASN \ SEQRES 49 A 1100 ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY ALA ASN \ SEQRES 50 A 1100 PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN LEU ALA \ SEQRES 51 A 1100 SER LEU MET ALA THR LEU GLU THR THR ASN PRO HIS PHE \ SEQRES 52 A 1100 VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU PRO ALA \ SEQRES 53 A 1100 LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU ARG CYS \ SEQRES 54 A 1100 ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG LYS GLY \ SEQRES 55 A 1100 PHE PRO ASN ARG ILE ILE TYR ALA ASP PHE VAL LYS ARG \ SEQRES 56 A 1100 TYR TYR LEU LEU ALA PRO ASN VAL PRO ARG ASP ALA GLU \ SEQRES 57 A 1100 ASP SER GLN LYS ALA THR ASP ALA VAL LEU LYS HIS LEU \ SEQRES 58 A 1100 ASN ILE ASP PRO GLU GLN TYR ARG PHE GLY ILE THR LYS \ SEQRES 59 A 1100 ILE PHE PHE ARG ALA GLY GLN LEU ALA ARG ILE GLU GLU \ SEQRES 60 A 1100 ALA ARG GLU GLN ARG ILE SER GLU ILE THR ARG GLY LEU \ SEQRES 61 A 1100 VAL PRO ARG GLY SER ASP GLN LEU ILE PRO VAL ILE ASN \ SEQRES 62 A 1100 LYS LEU GLN ASP VAL PHE ASN THR LEU GLY SER ASP PRO \ SEQRES 63 A 1100 LEU ASP LEU PRO GLN ILE VAL VAL VAL GLY SER GLN SER \ SEQRES 64 A 1100 SER GLY LYS SER SER VAL LEU GLU ASN ILE VAL GLY ARG \ SEQRES 65 A 1100 ASP PHE LEU PRO ARG GLY SER GLY ILE VAL THR ARG ARG \ SEQRES 66 A 1100 PRO LEU ILE LEU GLN LEU THR HIS LEU PRO ILE ALA ASP \ SEQRES 67 A 1100 ASP GLY SER GLN THR GLN GLU TRP GLY GLU PHE LEU HIS \ SEQRES 68 A 1100 LYS PRO ASN ASP MET PHE TYR ASP PHE SER GLU ILE ARG \ SEQRES 69 A 1100 GLU GLU ILE ILE ARG ASP THR ASP ARG MET THR GLY LYS \ SEQRES 70 A 1100 ASN LYS GLY ILE SER ALA GLN PRO ILE ASN LEU LYS ILE \ SEQRES 71 A 1100 TYR SER PRO HIS VAL VAL ASN LEU THR LEU VAL ASP LEU \ SEQRES 72 A 1100 PRO GLY ILE THR LYS VAL PRO VAL GLY ASP GLN PRO THR \ SEQRES 73 A 1100 ASP ILE GLU GLN GLN ILE ARG ARG MET VAL MET ALA TYR \ SEQRES 74 A 1100 ILE LYS LYS GLN ASN ALA ILE ILE VAL ALA VAL THR PRO \ SEQRES 75 A 1100 ALA ASN THR ASP LEU ALA ASN SER ASP ALA LEU GLN LEU \ SEQRES 76 A 1100 ALA LYS GLU VAL ASP PRO GLU GLY LYS ARG THR ILE GLY \ SEQRES 77 A 1100 VAL ILE THR LYS LEU ASP LEU MET ASP LYS GLY THR ASP \ SEQRES 78 A 1100 ALA MET GLU VAL LEU THR GLY ARG VAL ILE PRO LEU THR \ SEQRES 79 A 1100 LEU GLY PHE ILE GLY VAL ILE ASN ARG SER GLN GLU ASP \ SEQRES 80 A 1100 ILE ILE ALA LYS LYS SER ILE ARG GLU SER LEU LYS SER \ SEQRES 81 A 1100 GLU ILE LEU TYR PHE LYS ASN HIS PRO ILE TYR LYS SER \ SEQRES 82 A 1100 ILE ALA ASN ARG SER GLY THR ALA TYR LEU SER LYS THR \ SEQRES 83 A 1100 LEU ASN LYS LEU LEU MET PHE HIS ILE ARG ASP THR LEU \ SEQRES 84 A 1100 PRO ASP LEU LYS VAL LYS VAL SER LYS MET LEU SER ASP \ SEQRES 85 A 1100 VAL GLN GLY GLU LEU SER THR TYR \ HET BGC A1201 12 \ HET MG A1202 1 \ HET ADP A1203 27 \ HETNAM BGC BETA-D-GLUCOPYRANOSE \ HETNAM MG MAGNESIUM ION \ HETNAM ADP ADENOSINE-5'-DIPHOSPHATE \ HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE \ FORMUL 2 BGC C6 H12 O6 \ FORMUL 3 MG MG 2+ \ FORMUL 4 ADP C10 H15 N5 O10 P2 \ FORMUL 5 HOH *376(H2 O) \ HELIX 1 1 SER A 20 LYS A 27 1 8 \ HELIX 2 2 PHE A 36 SER A 41 1 6 \ HELIX 3 3 PRO A 93 ASP A 97 5 5 \ HELIX 4 4 ASP A 101 LEU A 105 5 5 \ HELIX 5 5 ASN A 109 GLN A 123 1 15 \ HELIX 6 6 THR A 147 LYS A 155 1 9 \ HELIX 7 7 HIS A 165 ARG A 181 1 17 \ HELIX 8 8 GLY A 195 ALA A 211 1 17 \ HELIX 9 9 GLY A 220 GLY A 237 1 18 \ HELIX 10 10 LYS A 276 PHE A 281 1 6 \ HELIX 11 11 TYR A 289 ALA A 299 1 11 \ HELIX 12 12 THR A 300 HIS A 308 1 9 \ HELIX 13 13 GLY A 311 PHE A 315 5 5 \ HELIX 14 14 SER A 330 GLY A 346 1 17 \ HELIX 15 15 SER A 348 ASN A 367 1 20 \ HELIX 16 16 LYS A 383 GLY A 394 1 12 \ HELIX 17 17 ASN A 396 GLU A 406 1 11 \ HELIX 18 18 ASN A 421 CYS A 453 1 33 \ HELIX 19 19 SER A 476 LYS A 509 1 34 \ HELIX 20 20 ASP A 516 ASP A 520 5 5 \ HELIX 21 21 SER A 521 GLY A 530 1 10 \ HELIX 22 22 GLY A 535 VAL A 545 1 11 \ HELIX 23 23 THR A 550 SER A 563 1 14 \ HELIX 24 24 ASP A 594 ASP A 601 1 8 \ HELIX 25 25 GLN A 604 ASP A 613 1 10 \ HELIX 26 26 ASP A 616 ASP A 625 1 10 \ HELIX 27 27 ASP A 625 SER A 630 1 6 \ HELIX 28 28 THR A 640 GLU A 657 1 18 \ HELIX 29 29 GLU A 679 ASN A 690 1 12 \ HELIX 30 30 TYR A 709 TYR A 717 1 9 \ HELIX 31 31 LEU A 718 ALA A 720 5 3 \ HELIX 32 32 ASP A 729 LEU A 741 1 13 \ HELIX 33 33 ASP A 744 GLU A 746 5 3 \ HELIX 34 34 GLY A 760 ILE A 776 1 17 \ HELIX 35 35 GLN A 787 ASN A 800 1 14 \ HELIX 36 36 GLY A 821 GLY A 831 1 11 \ HELIX 37 37 ASP A 879 ASP A 892 1 14 \ HELIX 38 38 ASP A 937 LYS A 951 1 15 \ HELIX 39 39 ASP A 971 ASP A 980 1 10 \ HELIX 40 40 LYS A 992 MET A 996 5 5 \ HELIX 41 41 ALA A 1002 THR A 1007 1 6 \ HELIX 42 42 SER A 1024 ALA A 1030 1 7 \ HELIX 43 43 GLU A 1036 ASN A 1047 1 12 \ HELIX 44 44 ILE A 1050 ARG A 1057 5 8 \ HELIX 45 45 SER A 1058 LEU A 1090 1 33 \ HELIX 46 46 THR A 777 VAL A 781 5 5 \ SHEET 1 A 5 GLN A 79 LYS A 84 0 \ SHEET 2 A 5 SER A 70 THR A 75 -1 N PHE A 71 O VAL A 83 \ SHEET 3 A 5 GLU A 59 GLU A 66 -1 N GLU A 62 O LYS A 74 \ SHEET 4 A 5 ARG A 44 TYR A 48 -1 N ARG A 44 O ILE A 63 \ SHEET 5 A 5 ASN A 89 GLN A 90 -1 O ASN A 89 N TRP A 47 \ SHEET 1 B 7 TYR A 127 TYR A 129 0 \ SHEET 2 B 7 PHE A 133 VAL A 137 -1 O VAL A 135 N THR A 128 \ SHEET 3 B 7 ASN A 660 ILE A 667 1 O ARG A 665 N LEU A 134 \ SHEET 4 B 7 GLN A 184 GLY A 190 1 N LEU A 187 O HIS A 662 \ SHEET 5 B 7 TYR A 459 ASP A 465 1 O GLY A 462 N GLN A 184 \ SHEET 6 B 7 GLY A 251 PHE A 258 -1 N LYS A 252 O ASP A 465 \ SHEET 7 B 7 ILE A 264 TYR A 272 -1 O TYR A 272 N GLY A 251 \ SHEET 1 C 2 ASN A 238 ALA A 239 0 \ SHEET 2 C 2 SER A 247 SER A 248 -1 O SER A 247 N ALA A 239 \ SHEET 1 D 2 GLU A 371 LYS A 372 0 \ SHEET 2 D 2 ALA A 378 VAL A 379 -1 O VAL A 379 N GLU A 371 \ SHEET 1 E 2 ARG A 408 ALA A 411 0 \ SHEET 2 E 2 ASP A 414 ALA A 417 -1 O ASP A 414 N ALA A 411 \ SHEET 1 F 3 TYR A 569 GLU A 570 0 \ SHEET 2 F 3 GLU A 578 HIS A 583 -1 O GLY A 580 N GLU A 570 \ SHEET 3 F 3 GLY A 586 GLU A 591 -1 O TYR A 590 N PHE A 579 \ SHEET 1 G 3 ASN A 705 ILE A 708 0 \ SHEET 2 G 3 LYS A 754 PHE A 757 -1 O PHE A 757 N ASN A 705 \ SHEET 3 G 3 TYR A 748 PHE A 750 -1 N ARG A 749 O PHE A 756 \ SHEET 1 H 8 TRP A 866 PHE A 869 0 \ SHEET 2 H 8 ILE A 906 SER A 912 -1 O LYS A 909 N GLU A 868 \ SHEET 3 H 8 LEU A 847 HIS A 853 1 N THR A 852 O ILE A 910 \ SHEET 4 H 8 LEU A 918 ASP A 922 -1 O LEU A 920 N LEU A 849 \ SHEET 5 H 8 GLN A 811 GLY A 816 1 N VAL A 814 O VAL A 921 \ SHEET 6 H 8 ALA A 955 PRO A 962 1 O VAL A 958 N VAL A 813 \ SHEET 7 H 8 THR A 986 THR A 991 1 O ILE A 987 N ILE A 957 \ SHEET 8 H 8 PHE A1017 GLY A1019 1 O ILE A1018 N ILE A 990 \ LINK C ILE A 776 N THR A 777 1555 1555 1.33 \ LINK OG1 THR A 197 MG MG A1202 1555 1555 2.19 \ LINK OG SER A 248 MG MG A1202 1555 1555 2.24 \ LINK MG MG A1202 O2B ADP A1203 1555 1555 2.25 \ LINK MG MG A1202 O HOH A1308 1555 1555 2.20 \ LINK MG MG A1202 O HOH A1347 1555 1555 2.24 \ LINK MG MG A1202 O HOH A1360 1555 1555 2.37 \ CISPEP 1 GLN A 532 PRO A 533 0 0.33 \ CRYST1 54.450 62.040 181.200 90.00 94.79 90.00 P 1 21 1 2 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.018365 0.000000 0.001539 0.00000 \ SCALE2 0.000000 0.016119 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.005538 0.00000 \ TER 8298 SER A1091 \ CONECT 1475 8311 \ CONECT 1814 8311 \ CONECT 6047 6053 \ CONECT 6053 6047 \ CONECT 8299 8300 8304 8306 \ CONECT 8300 8299 8301 8307 \ CONECT 8301 8300 8302 8308 \ CONECT 8302 8301 8303 8309 \ CONECT 8303 8302 8310 \ CONECT 8304 8299 8305 8309 \ CONECT 8305 8304 \ CONECT 8306 8299 \ CONECT 8307 8300 \ CONECT 8308 8301 \ CONECT 8309 8302 8304 \ CONECT 8310 8303 \ CONECT 8311 1475 1814 8314 8346 \ CONECT 8311 8385 8398 \ CONECT 8312 8313 8314 8315 8319 \ CONECT 8313 8312 \ CONECT 8314 8311 8312 \ CONECT 8315 8312 \ CONECT 8316 8317 8318 8319 8320 \ CONECT 8317 8316 \ CONECT 8318 8316 \ CONECT 8319 8312 8316 \ CONECT 8320 8316 8321 \ CONECT 8321 8320 8322 \ CONECT 8322 8321 8323 8324 \ CONECT 8323 8322 8328 \ CONECT 8324 8322 8325 8326 \ CONECT 8325 8324 \ CONECT 8326 8324 8327 8328 \ CONECT 8327 8326 \ CONECT 8328 8323 8326 8329 \ CONECT 8329 8328 8330 8338 \ CONECT 8330 8329 8331 \ CONECT 8331 8330 8332 \ CONECT 8332 8331 8333 8338 \ CONECT 8333 8332 8334 8335 \ CONECT 8334 8333 \ CONECT 8335 8333 8336 \ CONECT 8336 8335 8337 \ CONECT 8337 8336 8338 \ CONECT 8338 8329 8332 8337 \ CONECT 8346 8311 \ CONECT 8385 8311 \ CONECT 8398 8311 \ MASTER 359 0 3 46 32 0 0 6 8713 1 48 85 \ END \ """, "1jx2chainB") cmd.hide("all") cmd.color('grey70', "1jx2chainB") cmd.show('cartoon', "1jx2chainB") cmd.center("1jx2chainB", state=0, origin=1) cmd.zoom("1jx2chainB", animate=-1) cmd.select("e1jx2B1", "c. B & i. 2-306") cmd.color("red", "e1jx2B1") cmd.disable("e1jx2B1")