cmd.read_pdbstr("""\ HEADER TRANSCRIPTION/DNA 04-FEB-03 1NVP \ TITLE HUMAN TFIIA/TBP/DNA COMPLEX \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: 5'-D(*GP*GP*GP*GP*GP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*G)- \ COMPND 3 3'; \ COMPND 4 CHAIN: E; \ COMPND 5 ENGINEERED: YES; \ COMPND 6 MOL_ID: 2; \ COMPND 7 MOLECULE: 5'-D(*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*CP*CP*CP*CP*C)- \ COMPND 8 3'; \ COMPND 9 CHAIN: F; \ COMPND 10 ENGINEERED: YES; \ COMPND 11 MOL_ID: 3; \ COMPND 12 MOLECULE: TATA BOX BINDING PROTEIN; \ COMPND 13 CHAIN: A; \ COMPND 14 FRAGMENT: C-TERMINAL 181 AMINO ACIDS; \ COMPND 15 SYNONYM: TRANSCRIPTION INITIATION FACTOR TFIID, TATA-BOX FACTOR, TATA \ COMPND 16 SEQUENCE-BINDING PROTEIN, TBP; \ COMPND 17 ENGINEERED: YES; \ COMPND 18 MOL_ID: 4; \ COMPND 19 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA ALPHA CHAIN; \ COMPND 20 CHAIN: B; \ COMPND 21 FRAGMENT: N-TERMINAL 58 AMINO ACIDS; \ COMPND 22 SYNONYM: TFIIA P35 AND P19 SUBUNITS, TFIIA-42, TFIIAL; \ COMPND 23 ENGINEERED: YES; \ COMPND 24 MOL_ID: 5; \ COMPND 25 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA BETA CHAIN; \ COMPND 26 CHAIN: C; \ COMPND 27 FRAGMENT: C-TERMINAL 76 AMINO ACIDS; \ COMPND 28 SYNONYM: TFIIA P35 AND P19 SUBUNITS, TFIIA-42, TFIIAL; \ COMPND 29 ENGINEERED: YES; \ COMPND 30 MOL_ID: 6; \ COMPND 31 MOLECULE: TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN; \ COMPND 32 CHAIN: D; \ COMPND 33 SYNONYM: TFIIA P12 SUBUNIT, TFIIA-12, TFIIAS, TFIIA-GAMMA; \ COMPND 34 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 SYNTHETIC: YES; \ SOURCE 3 MOL_ID: 2; \ SOURCE 4 SYNTHETIC: YES; \ SOURCE 5 MOL_ID: 3; \ SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 7 ORGANISM_COMMON: HUMAN; \ SOURCE 8 ORGANISM_TAXID: 9606; \ SOURCE 9 GENE: TBP OR TFIID OR TF2D; \ SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 12 MOL_ID: 4; \ SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 14 ORGANISM_COMMON: HUMAN; \ SOURCE 15 ORGANISM_TAXID: 9606; \ SOURCE 16 GENE: GTF2A1 OR TF2A1; \ SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 18 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 19 MOL_ID: 5; \ SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 21 ORGANISM_COMMON: HUMAN; \ SOURCE 22 ORGANISM_TAXID: 9606; \ SOURCE 23 GENE: GTF2A1 OR TF2A1; \ SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 25 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 26 MOL_ID: 6; \ SOURCE 27 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 28 ORGANISM_COMMON: HUMAN; \ SOURCE 29 ORGANISM_TAXID: 9606; \ SOURCE 30 GENE: GTF2A2 OR TF2A2; \ SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 32 EXPRESSION_SYSTEM_TAXID: 562 \ KEYWDS TRANSCRIPTION REGULATION, DNA, COMPLEX, TRANSCRIPTION-DNA COMPLEX \ EXPDTA X-RAY DIFFRACTION \ AUTHOR M.BLEICHENBACHER,S.TAN,T.J.RICHMOND \ REVDAT 3 14-FEB-24 1NVP 1 REMARK SEQADV \ REVDAT 2 24-FEB-09 1NVP 1 VERSN \ REVDAT 1 21-OCT-03 1NVP 0 \ JRNL AUTH M.BLEICHENBACHER,S.TAN,T.J.RICHMOND \ JRNL TITL NOVEL INTERACTIONS BETWEEN THE COMPONENTS OF HUMAN AND YEAST \ JRNL TITL 2 TFIIA/TBP/DNA COMPLEXES. \ JRNL REF J.MOL.BIOL. V. 332 783 2003 \ JRNL REFN ISSN 0022-2836 \ JRNL PMID 12972251 \ JRNL DOI 10.1016/S0022-2836(03)00887-8 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.10 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : CNS \ REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- \ REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, \ REMARK 3 : READ,RICE,SIMONSON,WARREN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : NULL \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 \ REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL \ REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL \ REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 \ REMARK 3 NUMBER OF REFLECTIONS : 40386 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING SET) : 0.229 \ REMARK 3 FREE R VALUE : 0.247 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.100 \ REMARK 3 FREE R VALUE TEST SET COUNT : 3268 \ REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 6 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 \ REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6060 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 \ REMARK 3 BIN FREE R VALUE : 0.3190 \ REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.90 \ REMARK 3 BIN FREE R VALUE TEST SET COUNT : 519 \ REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 2936 \ REMARK 3 NUCLEIC ACID ATOMS : 691 \ REMARK 3 HETEROGEN ATOMS : 0 \ REMARK 3 SOLVENT ATOMS : 231 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : 30.50 \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.40 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : -2.37000 \ REMARK 3 B22 (A**2) : -10.15000 \ REMARK 3 B33 (A**2) : 12.52000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 0.00000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 \ REMARK 3 ESD FROM SIGMAA (A) : 0.26 \ REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 \ REMARK 3 \ REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. \ REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 \ REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 BOND LENGTHS (A) : 0.007 \ REMARK 3 BOND ANGLES (DEGREES) : 1.500 \ REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 \ REMARK 3 IMPROPER ANGLES (DEGREES) : 1.250 \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA \ REMARK 3 MAIN-CHAIN BOND (A**2) : 2.360 ; 2.000 \ REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.510 ; 3.000 \ REMARK 3 SIDE-CHAIN BOND (A**2) : 6.180 ; 4.000 \ REMARK 3 SIDE-CHAIN ANGLE (A**2) : 8.480 ; 6.000 \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELING. \ REMARK 3 METHOD USED : NULL \ REMARK 3 KSOL : NULL \ REMARK 3 BSOL : NULL \ REMARK 3 \ REMARK 3 NCS MODEL : NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT \ REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL \ REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL \ REMARK 3 \ REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM \ REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM \ REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM \ REMARK 3 PARAMETER FILE 4 : NULL \ REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP \ REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP \ REMARK 3 TOPOLOGY FILE 3 : WATER.TOP \ REMARK 3 TOPOLOGY FILE 4 : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: \ REMARK 3 REFINED ALSO WITH REFMAC BY MURSHUDOV, VAGIN, DODSON. \ REMARK 3 NO ELECTRON DENSITY VISIBLE FOR: \ REMARK 3 RESIDUES 339, CHAIN A \ REMARK 3 RESIDUES 2-8, CHAIN B \ REMARK 3 RESIDUES 52-58, CHAIN B \ REMARK 3 RESIDUES 301-329, CHAIN C \ REMARK 3 RESIDUE 2, CHAIN D \ REMARK 3 RESIDUES 100-109, CHAIN D \ REMARK 3 SIDE CHAINS FOR RESIDUES K12 OF CHAIN B. \ REMARK 3 SIDE CHAINS FOR RESIDUES D330, R363 OF CHAIN C. \ REMARK 3 SIDE CHAINS FOR RESIDUES Q50, R51, R53, T85, Q86 OF CHAIN D. \ REMARK 4 \ REMARK 4 1NVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-FEB-03. \ REMARK 100 THE DEPOSITION ID IS D_1000018256. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 21-MAR-97; 22-DEC-99 \ REMARK 200 TEMPERATURE (KELVIN) : 110; NULL \ REMARK 200 PH : 6.5 \ REMARK 200 NUMBER OF CRYSTALS USED : 3 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y; N \ REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG; ROTATING \ REMARK 200 ANODE \ REMARK 200 BEAMLINE : X11; NULL \ REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU200 \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.916, 0.909; 1.54 \ REMARK 200 MONOCHROMATOR : NULL; NULL \ REMARK 200 OPTICS : NULL; NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE \ REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO \ REMARK 200 DATA SCALING SOFTWARE : SCALEPACK \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40386 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 \ REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 \ REMARK 200 DATA REDUNDANCY : 5.600 \ REMARK 200 R MERGE (I) : 0.06500 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 25.6000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 \ REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 \ REMARK 200 R MERGE FOR SHELL (I) : 0.36200 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : 4.100 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: AMORE \ REMARK 200 STARTING MODEL: NULL \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 57.37 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, LITHIUM NITRATE, CALCIUM \ REMARK 280 CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X+1/2,-Y,Z+1/2 \ REMARK 290 3555 -X,Y+1/2,-Z+1/2 \ REMARK 290 4555 X+1/2,-Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.81200 \ REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.62800 \ REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.44200 \ REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.62800 \ REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.81200 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.44200 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B, C, D \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 THR A 339 \ REMARK 465 ALA B 2 \ REMARK 465 ASN B 3 \ REMARK 465 SER B 4 \ REMARK 465 ALA B 5 \ REMARK 465 ASN B 6 \ REMARK 465 THR B 7 \ REMARK 465 ASN B 8 \ REMARK 465 GLN B 52 \ REMARK 465 SER B 53 \ REMARK 465 ARG B 54 \ REMARK 465 ALA B 55 \ REMARK 465 VAL B 56 \ REMARK 465 ASP B 57 \ REMARK 465 GLY B 58 \ REMARK 465 GLY C 301 \ REMARK 465 SER C 302 \ REMARK 465 GLY C 303 \ REMARK 465 ALA C 304 \ REMARK 465 GLU C 305 \ REMARK 465 ASP C 306 \ REMARK 465 GLY C 307 \ REMARK 465 GLN C 308 \ REMARK 465 VAL C 309 \ REMARK 465 GLU C 310 \ REMARK 465 GLU C 311 \ REMARK 465 GLU C 312 \ REMARK 465 PRO C 313 \ REMARK 465 LEU C 314 \ REMARK 465 ASN C 315 \ REMARK 465 SER C 316 \ REMARK 465 GLU C 317 \ REMARK 465 ASP C 318 \ REMARK 465 ASP C 319 \ REMARK 465 VAL C 320 \ REMARK 465 SER C 321 \ REMARK 465 ASP C 322 \ REMARK 465 GLU C 323 \ REMARK 465 GLU C 324 \ REMARK 465 GLY C 325 \ REMARK 465 GLN C 326 \ REMARK 465 GLU C 327 \ REMARK 465 LEU C 328 \ REMARK 465 PHE C 329 \ REMARK 465 ALA D 2 \ REMARK 465 GLY D 100 \ REMARK 465 LYS D 101 \ REMARK 465 ASN D 102 \ REMARK 465 THR D 103 \ REMARK 465 GLY D 104 \ REMARK 465 SER D 105 \ REMARK 465 ASN D 106 \ REMARK 465 THR D 107 \ REMARK 465 THR D 108 \ REMARK 465 GLU D 109 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 THR A 338 O \ REMARK 470 LYS B 12 CG CD CE NZ \ REMARK 470 ASP C 330 CG OD1 OD2 \ REMARK 470 ARG C 363 CG CD NE CZ NH1 NH2 \ REMARK 470 GLN D 50 CG CD OE1 NE2 \ REMARK 470 ARG D 51 CG CD NE CZ NH1 NH2 \ REMARK 470 ARG D 53 CG CD NE CZ NH1 NH2 \ REMARK 470 THR D 85 OG1 CG2 \ REMARK 470 GLU D 86 CG CD OE1 OE2 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 DG E 2 N9 - C1' - C2' ANGL. DEV. = 9.6 DEGREES \ REMARK 500 DG E 7 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES \ REMARK 500 DT F 3 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES \ REMARK 500 DC F 14 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES \ REMARK 500 LEU D 87 N - CA - C ANGL. DEV. = 19.3 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 LYS A 249 -166.37 -112.88 \ REMARK 500 LYS C 346 -129.17 55.14 \ REMARK 500 ASP C 355 66.75 39.44 \ REMARK 500 GLN D 4 31.04 -80.15 \ REMARK 500 ARG D 51 -70.23 -86.06 \ REMARK 500 ARG D 53 29.84 -156.91 \ REMARK 500 VAL D 84 -64.00 -2.59 \ REMARK 500 THR D 85 40.29 -72.05 \ REMARK 500 GLU D 86 -165.67 71.23 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: PLANAR GROUPS \ REMARK 500 \ REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL \ REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE \ REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN \ REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS \ REMARK 500 AN RMSD GREATER THAN THIS VALUE \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 M RES CSSEQI RMS TYPE \ REMARK 500 DG E 1 0.07 SIDE CHAIN \ REMARK 500 DG E 2 0.07 SIDE CHAIN \ REMARK 500 DA E 10 0.05 SIDE CHAIN \ REMARK 500 DC F 15 0.07 SIDE CHAIN \ REMARK 500 \ REMARK 500 REMARK: NULL \ DBREF 1NVP A 159 339 UNP P20226 TBP_HUMAN 159 339 \ DBREF 1NVP B 2 58 UNP P52655 TF2AA_HUMAN 2 58 \ DBREF 1NVP C 303 376 UNP P52655 TF2AA_HUMAN 303 376 \ DBREF 1NVP D 2 109 UNP P52657 T2AG_HUMAN 2 109 \ DBREF 1NVP E 1 17 PDB 1NVP 1NVP 1 17 \ DBREF 1NVP F 1 17 PDB 1NVP 1NVP 1 17 \ SEQADV 1NVP GLY C 301 UNP P52655 CLONING ARTIFACT \ SEQADV 1NVP SER C 302 UNP P52655 CLONING ARTIFACT \ SEQRES 1 E 17 DG DG DG DG DG DG DG DC DT DA DT DA DA \ SEQRES 2 E 17 DA DA DG DG \ SEQRES 1 F 17 DC DC DT DT DT DT DA DT DA DG DC DC DC \ SEQRES 2 F 17 DC DC DC DC \ SEQRES 1 A 181 SER GLY ILE VAL PRO GLN LEU GLN ASN ILE VAL SER THR \ SEQRES 2 A 181 VAL ASN LEU GLY CYS LYS LEU ASP LEU LYS THR ILE ALA \ SEQRES 3 A 181 LEU ARG ALA ARG ASN ALA GLU TYR ASN PRO LYS ARG PHE \ SEQRES 4 A 181 ALA ALA VAL ILE MET ARG ILE ARG GLU PRO ARG THR THR \ SEQRES 5 A 181 ALA LEU ILE PHE SER SER GLY LYS MET VAL CYS THR GLY \ SEQRES 6 A 181 ALA LYS SER GLU GLU GLN SER ARG LEU ALA ALA ARG LYS \ SEQRES 7 A 181 TYR ALA ARG VAL VAL GLN LYS LEU GLY PHE PRO ALA LYS \ SEQRES 8 A 181 PHE LEU ASP PHE LYS ILE GLN ASN MET VAL GLY SER CYS \ SEQRES 9 A 181 ASP VAL LYS PHE PRO ILE ARG LEU GLU GLY LEU VAL LEU \ SEQRES 10 A 181 THR HIS GLN GLN PHE SER SER TYR GLU PRO GLU LEU PHE \ SEQRES 11 A 181 PRO GLY LEU ILE TYR ARG MET ILE LYS PRO ARG ILE VAL \ SEQRES 12 A 181 LEU LEU ILE PHE VAL SER GLY LYS VAL VAL LEU THR GLY \ SEQRES 13 A 181 ALA LYS VAL ARG ALA GLU ILE TYR GLU ALA PHE GLU ASN \ SEQRES 14 A 181 ILE TYR PRO ILE LEU LYS GLY PHE ARG LYS THR THR \ SEQRES 1 B 57 ALA ASN SER ALA ASN THR ASN THR VAL PRO LYS LEU TYR \ SEQRES 2 B 57 ARG SER VAL ILE GLU ASP VAL ILE ASN ASP VAL ARG ASP \ SEQRES 3 B 57 ILE PHE LEU ASP ASP GLY VAL ASP GLU GLN VAL LEU MET \ SEQRES 4 B 57 GLU LEU LYS THR LEU TRP GLU ASN LYS LEU MET GLN SER \ SEQRES 5 B 57 ARG ALA VAL ASP GLY \ SEQRES 1 C 76 GLY SER GLY ALA GLU ASP GLY GLN VAL GLU GLU GLU PRO \ SEQRES 2 C 76 LEU ASN SER GLU ASP ASP VAL SER ASP GLU GLU GLY GLN \ SEQRES 3 C 76 GLU LEU PHE ASP THR GLU ASN VAL VAL VAL CYS GLN TYR \ SEQRES 4 C 76 ASP LYS ILE HIS ARG SER LYS ASN LYS TRP LYS PHE HIS \ SEQRES 5 C 76 LEU LYS ASP GLY ILE MET ASN LEU ASN GLY ARG ASP TYR \ SEQRES 6 C 76 ILE PHE SER LYS ALA ILE GLY ASP ALA GLU TRP \ SEQRES 1 D 108 ALA TYR GLN LEU TYR ARG ASN THR THR LEU GLY ASN SER \ SEQRES 2 D 108 LEU GLN GLU SER LEU ASP GLU LEU ILE GLN SER GLN GLN \ SEQRES 3 D 108 ILE THR PRO GLN LEU ALA LEU GLN VAL LEU LEU GLN PHE \ SEQRES 4 D 108 ASP LYS ALA ILE ASN ALA ALA LEU ALA GLN ARG VAL ARG \ SEQRES 5 D 108 ASN ARG VAL ASN PHE ARG GLY SER LEU ASN THR TYR ARG \ SEQRES 6 D 108 PHE CYS ASP ASN VAL TRP THR PHE VAL LEU ASN ASP VAL \ SEQRES 7 D 108 GLU PHE ARG GLU VAL THR GLU LEU ILE LYS VAL ASP LYS \ SEQRES 8 D 108 VAL LYS ILE VAL ALA CYS ASP GLY LYS ASN THR GLY SER \ SEQRES 9 D 108 ASN THR THR GLU \ FORMUL 7 HOH *231(H2 O) \ HELIX 1 1 ASP A 179 ALA A 187 1 9 \ HELIX 2 2 SER A 226 LEU A 244 1 19 \ HELIX 3 3 ARG A 269 HIS A 277 1 9 \ HELIX 4 4 VAL A 317 GLY A 334 1 18 \ HELIX 5 5 THR B 9 GLY B 33 1 25 \ HELIX 6 6 ASP B 35 MET B 51 1 17 \ HELIX 7 7 TYR D 3 ASN D 8 5 6 \ HELIX 8 8 THR D 9 SER D 25 1 17 \ HELIX 9 9 THR D 29 ARG D 51 1 23 \ SHEET 1 A17 SER A 281 SER A 282 0 \ SHEET 2 A17 LEU A 291 MET A 295 -1 N ILE A 292 O SER A 282 \ SHEET 3 A17 ILE A 300 ILE A 304 -1 O ILE A 300 N MET A 295 \ SHEET 4 A17 LYS A 309 ALA A 315 -1 O VAL A 311 N LEU A 303 \ SHEET 5 A17 LEU A 251 ASP A 263 -1 O MET A 258 N ALA A 315 \ SHEET 6 A17 GLN A 164 ASN A 173 -1 N GLN A 164 O SER A 261 \ SHEET 7 A17 LYS A 218 THR A 222 -1 N MET A 219 O VAL A 172 \ SHEET 8 A17 THR A 209 ILE A 213 -1 O THR A 210 N THR A 222 \ SHEET 9 A17 PHE A 197 ILE A 204 -1 O VAL A 200 N ILE A 213 \ SHEET 10 A17 ALA A 190 ASN A 193 -1 O GLU A 191 N ILE A 201 \ SHEET 11 A17 ARG D 55 CYS D 68 1 O TYR D 65 N ALA A 190 \ SHEET 12 A17 ARG C 363 GLU C 375 1 O LYS C 369 N VAL D 56 \ SHEET 13 A17 LYS C 348 LEU C 360 -1 N TRP C 349 O ALA C 374 \ SHEET 14 A17 VAL C 334 SER C 345 -1 O VAL C 334 N ASN C 359 \ SHEET 15 A17 LEU D 87 CYS D 98 1 O LYS D 94 N VAL C 335 \ SHEET 16 A17 VAL D 71 ARG D 82 -1 O TRP D 72 N ALA D 97 \ SHEET 17 A17 ARG D 55 CYS D 68 -1 O ASN D 57 N ARG D 82 \ CISPEP 1 GLU A 206 PRO A 207 0 -0.26 \ CISPEP 2 LYS A 297 PRO A 298 0 -0.40 \ CRYST1 59.624 90.884 125.256 90.00 90.00 90.00 P 21 21 21 4 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.016772 0.000000 0.000000 0.00000 \ SCALE2 0.000000 0.011003 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.007984 0.00000 \ TER 360 DG E 17 \ TER 693 DC F 17 \ TER 2122 THR A 338 \ ATOM 2123 N THR B 9 19.513 72.968 23.613 1.00 96.67 N \ ATOM 2124 CA THR B 9 20.912 72.726 23.159 1.00 96.08 C \ ATOM 2125 C THR B 9 20.954 72.450 21.659 1.00 95.31 C \ ATOM 2126 O THR B 9 22.016 72.183 21.099 1.00 95.19 O \ ATOM 2127 CB THR B 9 21.540 71.526 23.904 1.00 96.93 C \ ATOM 2128 OG1 THR B 9 22.926 71.417 23.555 1.00 97.87 O \ ATOM 2129 CG2 THR B 9 20.825 70.232 23.532 1.00 98.76 C \ ATOM 2130 N VAL B 10 19.794 72.513 21.012 1.00 94.61 N \ ATOM 2131 CA VAL B 10 19.708 72.273 19.576 1.00 92.90 C \ ATOM 2132 C VAL B 10 19.695 73.575 18.782 1.00 92.71 C \ ATOM 2133 O VAL B 10 20.366 73.683 17.753 1.00 93.34 O \ ATOM 2134 CB VAL B 10 18.461 71.437 19.218 1.00 92.63 C \ ATOM 2135 CG1 VAL B 10 18.235 71.448 17.711 1.00 90.06 C \ ATOM 2136 CG2 VAL B 10 18.651 70.007 19.700 1.00 92.21 C \ ATOM 2137 N PRO B 11 18.918 74.577 19.229 1.00 91.57 N \ ATOM 2138 CA PRO B 11 18.931 75.820 18.453 1.00 89.42 C \ ATOM 2139 C PRO B 11 20.361 76.344 18.457 1.00 86.50 C \ ATOM 2140 O PRO B 11 20.834 76.922 17.480 1.00 85.92 O \ ATOM 2141 CB PRO B 11 17.981 76.723 19.233 1.00 90.24 C \ ATOM 2142 CG PRO B 11 17.000 75.751 19.811 1.00 91.00 C \ ATOM 2143 CD PRO B 11 17.904 74.638 20.298 1.00 92.07 C \ ATOM 2144 N LYS B 12 21.043 76.108 19.574 1.00 84.34 N \ ATOM 2145 CA LYS B 12 22.424 76.530 19.757 1.00 82.11 C \ ATOM 2146 C LYS B 12 23.340 75.930 18.697 1.00 79.96 C \ ATOM 2147 O LYS B 12 24.132 76.641 18.083 1.00 78.96 O \ ATOM 2148 CB LYS B 12 22.907 76.134 21.148 1.00 85.24 C \ ATOM 2149 N LEU B 13 23.235 74.621 18.483 1.00 80.58 N \ ATOM 2150 CA LEU B 13 24.073 73.957 17.490 1.00 78.85 C \ ATOM 2151 C LEU B 13 23.799 74.534 16.112 1.00 76.63 C \ ATOM 2152 O LEU B 13 24.723 74.787 15.340 1.00 76.06 O \ ATOM 2153 CB LEU B 13 23.811 72.448 17.463 1.00 81.72 C \ ATOM 2154 CG LEU B 13 24.727 71.690 16.493 1.00 83.22 C \ ATOM 2155 CD1 LEU B 13 25.738 70.872 17.280 1.00 83.00 C \ ATOM 2156 CD2 LEU B 13 23.901 70.794 15.585 1.00 83.93 C \ ATOM 2157 N TYR B 14 22.522 74.737 15.805 1.00 76.48 N \ ATOM 2158 CA TYR B 14 22.144 75.284 14.511 1.00 77.78 C \ ATOM 2159 C TYR B 14 22.732 76.676 14.310 1.00 77.52 C \ ATOM 2160 O TYR B 14 23.272 76.969 13.242 1.00 76.42 O \ ATOM 2161 CB TYR B 14 20.618 75.310 14.368 1.00 77.91 C \ ATOM 2162 CG TYR B 14 20.000 73.933 14.244 1.00 83.41 C \ ATOM 2163 CD1 TYR B 14 18.631 73.778 14.033 1.00 87.88 C \ ATOM 2164 CD2 TYR B 14 20.786 72.781 14.333 1.00 85.98 C \ ATOM 2165 CE1 TYR B 14 18.058 72.508 13.913 1.00 89.47 C \ ATOM 2166 CE2 TYR B 14 20.226 71.511 14.217 1.00 89.47 C \ ATOM 2167 CZ TYR B 14 18.862 71.381 14.006 1.00 90.88 C \ ATOM 2168 OH TYR B 14 18.308 70.128 13.886 1.00 88.88 O \ ATOM 2169 N ARG B 15 22.638 77.533 15.326 1.00 76.91 N \ ATOM 2170 CA ARG B 15 23.207 78.873 15.208 1.00 78.78 C \ ATOM 2171 C ARG B 15 24.681 78.667 14.926 1.00 76.60 C \ ATOM 2172 O ARG B 15 25.236 79.219 13.977 1.00 79.40 O \ ATOM 2173 CB ARG B 15 23.061 79.670 16.510 1.00 83.59 C \ ATOM 2174 CG ARG B 15 21.635 79.919 16.944 1.00 91.38 C \ ATOM 2175 CD ARG B 15 20.819 80.509 15.814 1.00100.45 C \ ATOM 2176 NE ARG B 15 19.392 80.430 16.099 1.00106.87 N \ ATOM 2177 CZ ARG B 15 18.470 80.115 15.195 1.00110.27 C \ ATOM 2178 NH1 ARG B 15 18.827 79.850 13.945 1.00107.34 N \ ATOM 2179 NH2 ARG B 15 17.193 80.056 15.543 1.00113.16 N \ ATOM 2180 N SER B 16 25.297 77.844 15.763 1.00 72.40 N \ ATOM 2181 CA SER B 16 26.710 77.535 15.651 1.00 70.79 C \ ATOM 2182 C SER B 16 27.089 77.133 14.232 1.00 68.38 C \ ATOM 2183 O SER B 16 28.048 77.660 13.667 1.00 69.00 O \ ATOM 2184 CB SER B 16 27.069 76.412 16.624 1.00 73.32 C \ ATOM 2185 OG SER B 16 28.469 76.220 16.680 1.00 81.89 O \ ATOM 2186 N VAL B 17 26.334 76.204 13.652 1.00 65.06 N \ ATOM 2187 CA VAL B 17 26.621 75.746 12.297 1.00 63.18 C \ ATOM 2188 C VAL B 17 26.367 76.817 11.243 1.00 60.35 C \ ATOM 2189 O VAL B 17 27.154 76.975 10.310 1.00 59.49 O \ ATOM 2190 CB VAL B 17 25.793 74.492 11.939 1.00 60.74 C \ ATOM 2191 CG1 VAL B 17 26.024 74.114 10.483 1.00 56.18 C \ ATOM 2192 CG2 VAL B 17 26.186 73.339 12.849 1.00 62.48 C \ ATOM 2193 N ILE B 18 25.262 77.542 11.375 1.00 61.28 N \ ATOM 2194 CA ILE B 18 24.949 78.595 10.416 1.00 64.28 C \ ATOM 2195 C ILE B 18 26.067 79.640 10.426 1.00 64.32 C \ ATOM 2196 O ILE B 18 26.545 80.061 9.371 1.00 62.45 O \ ATOM 2197 CB ILE B 18 23.589 79.268 10.741 1.00 65.95 C \ ATOM 2198 CG1 ILE B 18 22.449 78.269 10.507 1.00 68.31 C \ ATOM 2199 CG2 ILE B 18 23.393 80.507 9.871 1.00 66.79 C \ ATOM 2200 CD1 ILE B 18 21.056 78.830 10.737 1.00 60.48 C \ ATOM 2201 N GLU B 19 26.494 80.038 11.621 1.00 64.76 N \ ATOM 2202 CA GLU B 19 27.562 81.023 11.751 1.00 67.63 C \ ATOM 2203 C GLU B 19 28.820 80.533 11.056 1.00 65.30 C \ ATOM 2204 O GLU B 19 29.371 81.221 10.196 1.00 63.36 O \ ATOM 2205 CB GLU B 19 27.871 81.299 13.226 1.00 72.74 C \ ATOM 2206 CG GLU B 19 26.744 81.979 13.995 1.00 84.09 C \ ATOM 2207 CD GLU B 19 26.286 83.281 13.353 1.00 91.48 C \ ATOM 2208 OE1 GLU B 19 26.936 83.741 12.387 1.00 93.49 O \ ATOM 2209 OE2 GLU B 19 25.276 83.849 13.820 1.00 92.45 O \ ATOM 2210 N ASP B 20 29.267 79.337 11.430 1.00 64.32 N \ ATOM 2211 CA ASP B 20 30.465 78.757 10.839 1.00 64.31 C \ ATOM 2212 C ASP B 20 30.373 78.666 9.322 1.00 60.46 C \ ATOM 2213 O ASP B 20 31.304 79.055 8.617 1.00 60.95 O \ ATOM 2214 CB ASP B 20 30.736 77.366 11.426 1.00 70.49 C \ ATOM 2215 CG ASP B 20 31.077 77.413 12.905 1.00 78.45 C \ ATOM 2216 OD1 ASP B 20 31.322 78.525 13.420 1.00 81.22 O \ ATOM 2217 OD2 ASP B 20 31.109 76.343 13.550 1.00 81.41 O \ ATOM 2218 N VAL B 21 29.254 78.158 8.814 1.00 57.36 N \ ATOM 2219 CA VAL B 21 29.093 78.033 7.369 1.00 56.44 C \ ATOM 2220 C VAL B 21 29.121 79.396 6.684 1.00 53.46 C \ ATOM 2221 O VAL B 21 29.811 79.582 5.682 1.00 49.82 O \ ATOM 2222 CB VAL B 21 27.767 77.324 6.994 1.00 60.91 C \ ATOM 2223 CG1 VAL B 21 27.625 77.271 5.474 1.00 53.57 C \ ATOM 2224 CG2 VAL B 21 27.741 75.912 7.581 1.00 55.65 C \ ATOM 2225 N ILE B 22 28.361 80.347 7.220 1.00 57.93 N \ ATOM 2226 CA ILE B 22 28.318 81.685 6.637 1.00 59.09 C \ ATOM 2227 C ILE B 22 29.720 82.290 6.632 1.00 59.12 C \ ATOM 2228 O ILE B 22 30.182 82.794 5.609 1.00 58.35 O \ ATOM 2229 CB ILE B 22 27.348 82.603 7.411 1.00 57.96 C \ ATOM 2230 CG1 ILE B 22 25.922 82.057 7.295 1.00 55.16 C \ ATOM 2231 CG2 ILE B 22 27.408 84.023 6.851 1.00 64.77 C \ ATOM 2232 CD1 ILE B 22 25.429 81.914 5.858 1.00 57.65 C \ ATOM 2233 N ASN B 23 30.402 82.224 7.769 1.00 59.30 N \ ATOM 2234 CA ASN B 23 31.756 82.756 7.843 1.00 60.18 C \ ATOM 2235 C ASN B 23 32.676 82.048 6.856 1.00 58.57 C \ ATOM 2236 O ASN B 23 33.472 82.687 6.170 1.00 56.56 O \ ATOM 2237 CB ASN B 23 32.331 82.609 9.255 1.00 60.72 C \ ATOM 2238 CG ASN B 23 31.746 83.609 10.231 1.00 68.82 C \ ATOM 2239 OD1 ASN B 23 31.430 84.741 9.861 1.00 70.31 O \ ATOM 2240 ND2 ASN B 23 31.617 83.205 11.489 1.00 70.35 N \ ATOM 2241 N ASP B 24 32.557 80.727 6.764 1.00 59.37 N \ ATOM 2242 CA ASP B 24 33.422 79.963 5.872 1.00 59.28 C \ ATOM 2243 C ASP B 24 33.175 80.072 4.372 1.00 58.49 C \ ATOM 2244 O ASP B 24 34.017 79.639 3.586 1.00 60.68 O \ ATOM 2245 CB ASP B 24 33.430 78.489 6.285 1.00 63.10 C \ ATOM 2246 CG ASP B 24 34.347 78.225 7.464 1.00 68.33 C \ ATOM 2247 OD1 ASP B 24 35.560 78.495 7.342 1.00 76.04 O \ ATOM 2248 OD2 ASP B 24 33.862 77.751 8.511 1.00 65.61 O \ ATOM 2249 N VAL B 25 32.048 80.644 3.956 1.00 54.47 N \ ATOM 2250 CA VAL B 25 31.785 80.779 2.521 1.00 55.68 C \ ATOM 2251 C VAL B 25 31.950 82.219 2.018 1.00 55.14 C \ ATOM 2252 O VAL B 25 31.928 82.478 0.811 1.00 52.64 O \ ATOM 2253 CB VAL B 25 30.361 80.284 2.146 1.00 59.41 C \ ATOM 2254 CG1 VAL B 25 30.193 78.816 2.558 1.00 63.54 C \ ATOM 2255 CG2 VAL B 25 29.308 81.158 2.811 1.00 52.09 C \ ATOM 2256 N ARG B 26 32.116 83.148 2.952 1.00 52.22 N \ ATOM 2257 CA ARG B 26 32.290 84.558 2.613 1.00 53.59 C \ ATOM 2258 C ARG B 26 33.345 84.737 1.518 1.00 55.00 C \ ATOM 2259 O ARG B 26 33.066 85.329 0.471 1.00 53.13 O \ ATOM 2260 CB ARG B 26 32.668 85.343 3.878 1.00 55.11 C \ ATOM 2261 CG ARG B 26 32.761 86.856 3.698 1.00 56.11 C \ ATOM 2262 CD ARG B 26 32.634 87.574 5.037 1.00 59.88 C \ ATOM 2263 NE ARG B 26 31.239 87.792 5.412 1.00 66.17 N \ ATOM 2264 CZ ARG B 26 30.662 87.312 6.511 1.00 77.91 C \ ATOM 2265 NH1 ARG B 26 31.358 86.571 7.363 1.00 74.68 N \ ATOM 2266 NH2 ARG B 26 29.386 87.583 6.762 1.00 78.92 N \ ATOM 2267 N ASP B 27 34.547 84.203 1.736 1.00 56.16 N \ ATOM 2268 CA ASP B 27 35.605 84.332 0.739 1.00 56.47 C \ ATOM 2269 C ASP B 27 35.227 83.738 -0.605 1.00 56.67 C \ ATOM 2270 O ASP B 27 35.606 84.269 -1.652 1.00 54.28 O \ ATOM 2271 CB ASP B 27 36.905 83.681 1.223 1.00 61.39 C \ ATOM 2272 CG ASP B 27 37.523 84.416 2.395 1.00 72.03 C \ ATOM 2273 OD1 ASP B 27 37.245 85.624 2.553 1.00 68.18 O \ ATOM 2274 OD2 ASP B 27 38.295 83.788 3.150 1.00 80.21 O \ ATOM 2275 N ILE B 28 34.481 82.636 -0.586 1.00 58.38 N \ ATOM 2276 CA ILE B 28 34.079 81.996 -1.837 1.00 57.90 C \ ATOM 2277 C ILE B 28 33.143 82.919 -2.603 1.00 54.54 C \ ATOM 2278 O ILE B 28 33.252 83.059 -3.820 1.00 51.63 O \ ATOM 2279 CB ILE B 28 33.363 80.652 -1.591 1.00 63.72 C \ ATOM 2280 CG1 ILE B 28 34.235 79.751 -0.712 1.00 70.67 C \ ATOM 2281 CG2 ILE B 28 33.082 79.968 -2.926 1.00 70.20 C \ ATOM 2282 CD1 ILE B 28 33.640 78.379 -0.451 1.00 67.43 C \ ATOM 2283 N PHE B 29 32.210 83.537 -1.884 1.00 54.37 N \ ATOM 2284 CA PHE B 29 31.277 84.469 -2.508 1.00 55.21 C \ ATOM 2285 C PHE B 29 32.080 85.620 -3.106 1.00 56.24 C \ ATOM 2286 O PHE B 29 31.862 86.022 -4.253 1.00 57.35 O \ ATOM 2287 CB PHE B 29 30.289 85.020 -1.476 1.00 52.18 C \ ATOM 2288 CG PHE B 29 29.050 84.185 -1.308 1.00 55.56 C \ ATOM 2289 CD1 PHE B 29 27.788 84.767 -1.428 1.00 58.07 C \ ATOM 2290 CD2 PHE B 29 29.137 82.824 -1.019 1.00 55.53 C \ ATOM 2291 CE1 PHE B 29 26.627 84.009 -1.258 1.00 61.02 C \ ATOM 2292 CE2 PHE B 29 27.982 82.056 -0.847 1.00 60.12 C \ ATOM 2293 CZ PHE B 29 26.724 82.651 -0.968 1.00 56.33 C \ ATOM 2294 N LEU B 30 33.027 86.129 -2.323 1.00 53.79 N \ ATOM 2295 CA LEU B 30 33.869 87.237 -2.761 1.00 54.43 C \ ATOM 2296 C LEU B 30 34.705 86.858 -3.975 1.00 52.13 C \ ATOM 2297 O LEU B 30 34.784 87.621 -4.939 1.00 52.30 O \ ATOM 2298 CB LEU B 30 34.761 87.705 -1.605 1.00 51.30 C \ ATOM 2299 CG LEU B 30 33.972 88.288 -0.423 1.00 58.80 C \ ATOM 2300 CD1 LEU B 30 34.893 88.591 0.745 1.00 61.74 C \ ATOM 2301 CD2 LEU B 30 33.249 89.547 -0.874 1.00 61.08 C \ ATOM 2302 N ASP B 31 35.310 85.671 -3.942 1.00 52.16 N \ ATOM 2303 CA ASP B 31 36.133 85.208 -5.061 1.00 54.20 C \ ATOM 2304 C ASP B 31 35.304 85.041 -6.324 1.00 55.20 C \ ATOM 2305 O ASP B 31 35.818 85.131 -7.438 1.00 53.54 O \ ATOM 2306 CB ASP B 31 36.813 83.876 -4.723 1.00 56.65 C \ ATOM 2307 CG ASP B 31 37.811 84.005 -3.592 1.00 60.18 C \ ATOM 2308 OD1 ASP B 31 38.150 85.151 -3.226 1.00 60.22 O \ ATOM 2309 OD2 ASP B 31 38.265 82.965 -3.072 1.00 61.66 O \ ATOM 2310 N ASP B 32 34.014 84.789 -6.141 1.00 56.97 N \ ATOM 2311 CA ASP B 32 33.108 84.619 -7.268 1.00 61.31 C \ ATOM 2312 C ASP B 32 32.556 85.956 -7.752 1.00 60.79 C \ ATOM 2313 O ASP B 32 31.958 86.038 -8.822 1.00 61.11 O \ ATOM 2314 CB ASP B 32 31.965 83.679 -6.878 1.00 62.94 C \ ATOM 2315 CG ASP B 32 32.224 82.247 -7.309 1.00 68.44 C \ ATOM 2316 OD1 ASP B 32 31.771 81.320 -6.606 1.00 76.96 O \ ATOM 2317 OD2 ASP B 32 32.873 82.054 -8.361 1.00 70.86 O \ ATOM 2318 N GLY B 33 32.765 87.003 -6.962 1.00 61.51 N \ ATOM 2319 CA GLY B 33 32.282 88.313 -7.349 1.00 59.75 C \ ATOM 2320 C GLY B 33 30.846 88.547 -6.935 1.00 59.21 C \ ATOM 2321 O GLY B 33 30.151 89.385 -7.510 1.00 59.69 O \ ATOM 2322 N VAL B 34 30.392 87.798 -5.937 1.00 57.91 N \ ATOM 2323 CA VAL B 34 29.032 87.955 -5.451 1.00 59.90 C \ ATOM 2324 C VAL B 34 29.041 88.952 -4.301 1.00 60.49 C \ ATOM 2325 O VAL B 34 29.843 88.844 -3.372 1.00 56.62 O \ ATOM 2326 CB VAL B 34 28.431 86.604 -4.974 1.00 54.90 C \ ATOM 2327 CG1 VAL B 34 27.062 86.836 -4.339 1.00 50.53 C \ ATOM 2328 CG2 VAL B 34 28.300 85.651 -6.161 1.00 50.87 C \ ATOM 2329 N ASP B 35 28.146 89.930 -4.381 1.00 62.09 N \ ATOM 2330 CA ASP B 35 28.049 90.957 -3.358 1.00 63.13 C \ ATOM 2331 C ASP B 35 27.783 90.329 -2.002 1.00 63.83 C \ ATOM 2332 O ASP B 35 26.978 89.407 -1.879 1.00 63.20 O \ ATOM 2333 CB ASP B 35 26.926 91.938 -3.699 1.00 66.18 C \ ATOM 2334 CG ASP B 35 26.930 93.164 -2.803 1.00 69.31 C \ ATOM 2335 OD1 ASP B 35 26.762 93.017 -1.574 1.00 67.89 O \ ATOM 2336 OD2 ASP B 35 27.104 94.279 -3.334 1.00 78.84 O \ ATOM 2337 N GLU B 36 28.459 90.840 -0.982 1.00 60.60 N \ ATOM 2338 CA GLU B 36 28.286 90.324 0.362 1.00 60.34 C \ ATOM 2339 C GLU B 36 26.837 90.413 0.829 1.00 59.72 C \ ATOM 2340 O GLU B 36 26.446 89.736 1.782 1.00 58.59 O \ ATOM 2341 CB GLU B 36 29.199 91.072 1.328 1.00 62.08 C \ ATOM 2342 CG GLU B 36 29.047 90.651 2.767 1.00 72.60 C \ ATOM 2343 CD GLU B 36 30.365 90.647 3.499 1.00 82.71 C \ ATOM 2344 OE1 GLU B 36 31.322 91.284 3.006 1.00 87.78 O \ ATOM 2345 OE2 GLU B 36 30.442 90.013 4.570 1.00 87.72 O \ ATOM 2346 N GLN B 37 26.037 91.248 0.168 1.00 56.24 N \ ATOM 2347 CA GLN B 37 24.632 91.367 0.546 1.00 56.19 C \ ATOM 2348 C GLN B 37 23.929 90.034 0.295 1.00 53.16 C \ ATOM 2349 O GLN B 37 23.089 89.609 1.082 1.00 54.86 O \ ATOM 2350 CB GLN B 37 23.920 92.468 -0.252 1.00 52.38 C \ ATOM 2351 CG GLN B 37 24.310 93.889 0.133 1.00 65.72 C \ ATOM 2352 CD GLN B 37 23.276 94.915 -0.309 1.00 70.29 C \ ATOM 2353 OE1 GLN B 37 22.876 94.949 -1.474 1.00 73.63 O \ ATOM 2354 NE2 GLN B 37 22.841 95.756 0.623 1.00 56.39 N \ ATOM 2355 N VAL B 38 24.272 89.387 -0.812 1.00 50.72 N \ ATOM 2356 CA VAL B 38 23.671 88.102 -1.147 1.00 52.13 C \ ATOM 2357 C VAL B 38 23.974 87.101 -0.035 1.00 52.38 C \ ATOM 2358 O VAL B 38 23.110 86.321 0.362 1.00 53.18 O \ ATOM 2359 CB VAL B 38 24.224 87.562 -2.470 1.00 49.87 C \ ATOM 2360 CG1 VAL B 38 23.475 86.286 -2.872 1.00 55.08 C \ ATOM 2361 CG2 VAL B 38 24.100 88.622 -3.546 1.00 54.44 C \ ATOM 2362 N LEU B 39 25.199 87.131 0.479 1.00 54.15 N \ ATOM 2363 CA LEU B 39 25.565 86.217 1.547 1.00 54.23 C \ ATOM 2364 C LEU B 39 24.608 86.396 2.718 1.00 57.35 C \ ATOM 2365 O LEU B 39 24.089 85.418 3.268 1.00 55.89 O \ ATOM 2366 CB LEU B 39 26.999 86.470 2.017 1.00 54.37 C \ ATOM 2367 CG LEU B 39 27.482 85.535 3.137 1.00 58.70 C \ ATOM 2368 CD1 LEU B 39 27.516 84.101 2.623 1.00 59.75 C \ ATOM 2369 CD2 LEU B 39 28.865 85.955 3.617 1.00 61.44 C \ ATOM 2370 N MET B 40 24.369 87.650 3.096 1.00 53.47 N \ ATOM 2371 CA MET B 40 23.481 87.940 4.214 1.00 53.89 C \ ATOM 2372 C MET B 40 22.046 87.517 3.918 1.00 51.36 C \ ATOM 2373 O MET B 40 21.300 87.153 4.825 1.00 52.90 O \ ATOM 2374 CB MET B 40 23.527 89.434 4.559 1.00 55.18 C \ ATOM 2375 CG MET B 40 24.920 89.943 4.898 1.00 67.42 C \ ATOM 2376 SD MET B 40 25.798 88.882 6.073 1.00 76.90 S \ ATOM 2377 CE MET B 40 24.958 89.296 7.608 1.00 69.51 C \ ATOM 2378 N GLU B 41 21.653 87.576 2.654 1.00 51.61 N \ ATOM 2379 CA GLU B 41 20.306 87.168 2.291 1.00 55.72 C \ ATOM 2380 C GLU B 41 20.221 85.657 2.546 1.00 55.03 C \ ATOM 2381 O GLU B 41 19.228 85.159 3.081 1.00 53.51 O \ ATOM 2382 CB GLU B 41 20.026 87.470 0.817 1.00 58.01 C \ ATOM 2383 CG GLU B 41 18.541 87.624 0.507 1.00 70.42 C \ ATOM 2384 CD GLU B 41 18.254 87.728 -0.978 1.00 78.79 C \ ATOM 2385 OE1 GLU B 41 19.020 88.413 -1.689 1.00 85.43 O \ ATOM 2386 OE2 GLU B 41 17.253 87.131 -1.433 1.00 82.96 O \ ATOM 2387 N LEU B 42 21.280 84.941 2.173 1.00 54.73 N \ ATOM 2388 CA LEU B 42 21.339 83.493 2.378 1.00 51.58 C \ ATOM 2389 C LEU B 42 21.086 83.193 3.841 1.00 52.08 C \ ATOM 2390 O LEU B 42 20.154 82.464 4.180 1.00 49.95 O \ ATOM 2391 CB LEU B 42 22.712 82.946 1.979 1.00 47.65 C \ ATOM 2392 CG LEU B 42 22.922 81.435 2.133 1.00 53.56 C \ ATOM 2393 CD1 LEU B 42 21.914 80.690 1.264 1.00 56.70 C \ ATOM 2394 CD2 LEU B 42 24.347 81.072 1.726 1.00 47.81 C \ ATOM 2395 N LYS B 43 21.910 83.767 4.712 1.00 52.24 N \ ATOM 2396 CA LYS B 43 21.759 83.551 6.144 1.00 51.64 C \ ATOM 2397 C LYS B 43 20.338 83.834 6.610 1.00 53.31 C \ ATOM 2398 O LYS B 43 19.774 83.072 7.402 1.00 52.15 O \ ATOM 2399 CB LYS B 43 22.720 84.438 6.934 1.00 56.10 C \ ATOM 2400 CG LYS B 43 22.669 84.169 8.429 1.00 59.60 C \ ATOM 2401 CD LYS B 43 23.603 85.068 9.215 1.00 65.82 C \ ATOM 2402 CE LYS B 43 24.037 84.367 10.491 1.00 73.37 C \ ATOM 2403 NZ LYS B 43 24.336 85.300 11.609 1.00 77.04 N \ ATOM 2404 N THR B 44 19.763 84.933 6.127 1.00 53.73 N \ ATOM 2405 CA THR B 44 18.408 85.311 6.516 1.00 58.82 C \ ATOM 2406 C THR B 44 17.387 84.295 6.017 1.00 60.48 C \ ATOM 2407 O THR B 44 16.545 83.833 6.784 1.00 59.02 O \ ATOM 2408 CB THR B 44 18.035 86.714 5.977 1.00 60.20 C \ ATOM 2409 OG1 THR B 44 18.929 87.687 6.530 1.00 63.91 O \ ATOM 2410 CG2 THR B 44 16.610 87.077 6.367 1.00 60.07 C \ ATOM 2411 N LEU B 45 17.456 83.962 4.730 1.00 61.34 N \ ATOM 2412 CA LEU B 45 16.545 82.980 4.145 1.00 62.31 C \ ATOM 2413 C LEU B 45 16.627 81.689 4.954 1.00 60.67 C \ ATOM 2414 O LEU B 45 15.613 81.118 5.358 1.00 58.24 O \ ATOM 2415 CB LEU B 45 16.938 82.677 2.697 1.00 63.27 C \ ATOM 2416 CG LEU B 45 16.652 83.712 1.610 1.00 69.95 C \ ATOM 2417 CD1 LEU B 45 17.230 83.236 0.286 1.00 62.48 C \ ATOM 2418 CD2 LEU B 45 15.149 83.918 1.489 1.00 73.64 C \ ATOM 2419 N TRP B 46 17.860 81.255 5.194 1.00 59.99 N \ ATOM 2420 CA TRP B 46 18.148 80.036 5.933 1.00 62.06 C \ ATOM 2421 C TRP B 46 17.617 80.037 7.365 1.00 65.23 C \ ATOM 2422 O TRP B 46 16.918 79.105 7.771 1.00 66.02 O \ ATOM 2423 CB TRP B 46 19.661 79.799 5.937 1.00 61.68 C \ ATOM 2424 CG TRP B 46 20.080 78.452 6.450 1.00 62.98 C \ ATOM 2425 CD1 TRP B 46 19.265 77.409 6.805 1.00 59.80 C \ ATOM 2426 CD2 TRP B 46 21.423 77.996 6.650 1.00 58.19 C \ ATOM 2427 NE1 TRP B 46 20.020 76.333 7.212 1.00 59.39 N \ ATOM 2428 CE2 TRP B 46 21.348 76.665 7.127 1.00 60.27 C \ ATOM 2429 CE3 TRP B 46 22.685 78.581 6.472 1.00 53.04 C \ ATOM 2430 CZ2 TRP B 46 22.487 75.909 7.428 1.00 54.37 C \ ATOM 2431 CZ3 TRP B 46 23.821 77.830 6.772 1.00 60.28 C \ ATOM 2432 CH2 TRP B 46 23.711 76.506 7.245 1.00 65.40 C \ ATOM 2433 N GLU B 47 17.944 81.073 8.130 1.00 67.47 N \ ATOM 2434 CA GLU B 47 17.495 81.157 9.517 1.00 69.03 C \ ATOM 2435 C GLU B 47 15.976 81.202 9.632 1.00 71.24 C \ ATOM 2436 O GLU B 47 15.393 80.584 10.524 1.00 71.92 O \ ATOM 2437 CB GLU B 47 18.087 82.393 10.197 1.00 67.35 C \ ATOM 2438 CG GLU B 47 19.596 82.491 10.100 1.00 72.63 C \ ATOM 2439 CD GLU B 47 20.154 83.683 10.852 1.00 73.15 C \ ATOM 2440 OE1 GLU B 47 19.457 84.717 10.920 1.00 78.29 O \ ATOM 2441 OE2 GLU B 47 21.292 83.590 11.359 1.00 65.31 O \ ATOM 2442 N ASN B 48 15.333 81.934 8.730 1.00 72.40 N \ ATOM 2443 CA ASN B 48 13.886 82.051 8.773 1.00 73.85 C \ ATOM 2444 C ASN B 48 13.199 80.756 8.378 1.00 75.24 C \ ATOM 2445 O ASN B 48 12.127 80.436 8.893 1.00 75.66 O \ ATOM 2446 CB ASN B 48 13.415 83.199 7.878 1.00 76.40 C \ ATOM 2447 CG ASN B 48 13.989 84.538 8.306 1.00 79.60 C \ ATOM 2448 OD1 ASN B 48 14.192 84.788 9.496 1.00 77.44 O \ ATOM 2449 ND2 ASN B 48 14.244 85.411 7.338 1.00 81.92 N \ ATOM 2450 N LYS B 49 13.804 80.005 7.467 1.00 75.16 N \ ATOM 2451 CA LYS B 49 13.197 78.748 7.074 1.00 74.79 C \ ATOM 2452 C LYS B 49 13.199 77.790 8.252 1.00 77.78 C \ ATOM 2453 O LYS B 49 12.293 76.967 8.389 1.00 78.78 O \ ATOM 2454 CB LYS B 49 13.906 78.162 5.856 1.00 69.24 C \ ATOM 2455 CG LYS B 49 13.077 78.405 4.617 1.00 67.03 C \ ATOM 2456 CD LYS B 49 13.853 78.437 3.326 1.00 72.54 C \ ATOM 2457 CE LYS B 49 12.968 79.057 2.252 1.00 74.57 C \ ATOM 2458 NZ LYS B 49 13.502 78.905 0.878 1.00 77.87 N \ ATOM 2459 N LEU B 50 14.200 77.915 9.119 1.00 79.28 N \ ATOM 2460 CA LEU B 50 14.263 77.075 10.306 1.00 83.21 C \ ATOM 2461 C LEU B 50 13.027 77.357 11.149 1.00 86.70 C \ ATOM 2462 O LEU B 50 12.395 76.438 11.670 1.00 87.15 O \ ATOM 2463 CB LEU B 50 15.524 77.370 11.120 1.00 80.58 C \ ATOM 2464 CG LEU B 50 16.748 76.522 10.780 1.00 77.98 C \ ATOM 2465 CD1 LEU B 50 17.928 76.944 11.646 1.00 75.83 C \ ATOM 2466 CD2 LEU B 50 16.418 75.049 11.004 1.00 73.20 C \ ATOM 2467 N MET B 51 12.683 78.636 11.280 1.00 90.03 N \ ATOM 2468 CA MET B 51 11.502 79.021 12.044 1.00 93.15 C \ ATOM 2469 C MET B 51 10.247 78.647 11.263 1.00 93.82 C \ ATOM 2470 O MET B 51 9.409 77.908 11.821 1.00 94.78 O \ ATOM 2471 CB MET B 51 11.497 80.526 12.328 1.00 96.74 C \ ATOM 2472 CG MET B 51 12.538 80.988 13.335 1.00103.23 C \ ATOM 2473 SD MET B 51 12.266 82.699 13.864 1.00114.11 S \ ATOM 2474 CE MET B 51 12.977 83.601 12.482 1.00109.36 C \ TER 2475 MET B 51 \ TER 2861 TRP C 376 \ TER 3633 ASP D 99 \ HETATM 3826 O HOH B 74 35.258 82.458 4.298 1.00 67.44 O \ HETATM 3827 O HOH B 93 29.663 74.073 14.985 1.00 75.05 O \ HETATM 3828 O HOH B 103 31.738 90.962 -3.820 1.00 59.97 O \ HETATM 3829 O HOH B 146 21.644 87.986 7.752 1.00 67.33 O \ HETATM 3830 O HOH B 204 26.348 89.993 -6.248 1.00 54.76 O \ HETATM 3831 O HOH B 211 33.407 80.372 12.234 1.00 89.87 O \ HETATM 3832 O HOH B 215 30.981 92.632 -1.192 1.00 60.75 O \ MASTER 371 0 0 9 17 0 0 6 3858 6 0 38 \ END \ """, "1nvpchainB") cmd.hide("all") cmd.color('grey70', "1nvpchainB") cmd.show('cartoon', "1nvpchainB") cmd.center("1nvpchainB", state=0, origin=1) cmd.zoom("1nvpchainB", animate=-1) cmd.select("e1nvpB1", "c. B & i. 9-51") cmd.color("red", "e1nvpB1") cmd.disable("e1nvpB1")