cmd.read_pdbstr("""\ HEADER TOXIN/ANTITOXIN 19-SEP-18 6IFC \ TITLE CRYSTAL STRUCTURE OF VAPBC FROM SALMONELLA TYPHIMURIUM \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: TRNA(FMET)-SPECIFIC ENDONUCLEASE VAPC; \ COMPND 3 CHAIN: A, C, E, G; \ COMPND 4 SYNONYM: RNASE VAPC,TOXIN VAPC; \ COMPND 5 EC: 3.1.-.-; \ COMPND 6 ENGINEERED: YES; \ COMPND 7 MOL_ID: 2; \ COMPND 8 MOLECULE: ANTITOXIN VAPB; \ COMPND 9 CHAIN: B, F; \ COMPND 10 ENGINEERED: YES; \ COMPND 11 MOL_ID: 3; \ COMPND 12 MOLECULE: ANTITOXIN VAPB; \ COMPND 13 CHAIN: D, H; \ COMPND 14 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / \ SOURCE 3 ATCC 700720); \ SOURCE 4 ORGANISM_TAXID: 99287; \ SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; \ SOURCE 6 GENE: VAPC, STM3033; \ SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 9 MOL_ID: 2; \ SOURCE 10 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / \ SOURCE 11 ATCC 700720); \ SOURCE 12 ORGANISM_TAXID: 99287; \ SOURCE 13 STRAIN: LT2 / SGSC1412 / ATCC 700720; \ SOURCE 14 GENE: VAPB, STM3034; \ SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 17 MOL_ID: 3; \ SOURCE 18 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / \ SOURCE 19 ATCC 700720); \ SOURCE 20 ORGANISM_TAXID: 99287; \ SOURCE 21 STRAIN: LT2 / SGSC1412 / ATCC 700720; \ SOURCE 22 GENE: VAPB, STM3034; \ SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 \ KEYWDS TOXIN-ANTITOXIN, TOXIN-ANTITOXIN COMPLEX \ EXPDTA X-RAY DIFFRACTION \ AUTHOR D.W.PARK,B.J.LEE \ REVDAT 3 22-NOV-23 6IFC 1 LINK \ REVDAT 2 26-FEB-20 6IFC 1 JRNL \ REVDAT 1 29-JAN-20 6IFC 0 \ JRNL AUTH D.PARK,H.J.YOON,K.Y.LEE,S.J.PARK,S.H.CHEON,H.H.LEE,S.J.LEE, \ JRNL AUTH 2 B.J.LEE \ JRNL TITL CRYSTAL STRUCTURE OF PROTEOLYZED VAPBC AND DNA-BOUND VAPBC \ JRNL TITL 2 FROM SALMONELLA ENTERICA TYPHIMURIUM LT2 AND VAPC AS A \ JRNL TITL 3 PUTATIVE CA2+-DEPENDENT RIBONUCLEASE. \ JRNL REF FASEB J. V. 34 3051 2020 \ JRNL REFN ESSN 1530-6860 \ JRNL PMID 31908032 \ JRNL DOI 10.1096/FJ.201901989R \ REMARK 2 \ REMARK 2 RESOLUTION. 1.99 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.8.0049 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : NULL \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.47 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL \ REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 \ REMARK 3 NUMBER OF REFLECTIONS : 36229 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 \ REMARK 3 R VALUE (WORKING SET) : 0.175 \ REMARK 3 FREE R VALUE : 0.238 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 \ REMARK 3 FREE R VALUE TEST SET COUNT : 1905 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 2581 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.46 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 \ REMARK 3 BIN FREE R VALUE SET COUNT : 141 \ REMARK 3 BIN FREE R VALUE : 0.2690 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 4976 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 4 \ REMARK 3 SOLVENT ATOMS : 206 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.65 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 1.53000 \ REMARK 3 B22 (A**2) : -0.98000 \ REMARK 3 B33 (A**2) : -0.28000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : -0.17000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 0.211 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.751 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5070 ; 0.016 ; 0.019 \ REMARK 3 BOND LENGTHS OTHERS (A): 4824 ; 0.001 ; 0.020 \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6848 ; 1.590 ; 1.951 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): 11082 ; 0.837 ; 3.000 \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 6.165 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;35.912 ;23.388 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 892 ;15.613 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;19.388 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.092 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5698 ; 0.007 ; 0.021 \ REMARK 3 GENERAL PLANES OTHERS (A): 1182 ; 0.001 ; 0.020 \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2504 ; 3.002 ; 3.380 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2503 ; 2.994 ; 3.379 \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3116 ; 4.257 ; 5.042 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3117 ; 4.256 ; 5.044 \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2566 ; 3.919 ; 3.860 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2567 ; 3.918 ; 3.861 \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3733 ; 6.022 ; 5.616 \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6018 ; 8.057 ;27.512 \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5976 ; 8.056 ;27.451 \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : NULL \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS \ REMARK 4 \ REMARK 4 6IFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-SEP-18. \ REMARK 100 THE DEPOSITION ID IS D_1300008902. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 01-DEC-16 \ REMARK 200 TEMPERATURE (KELVIN) : 293 \ REMARK 200 PH : NULL \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : PAL/PLS \ REMARK 200 BEAMLINE : 5C (4A) \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : NONIUS KAPPA CCD \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 \ REMARK 200 DATA SCALING SOFTWARE : HKL-2000 \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38222 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 \ REMARK 200 RESOLUTION RANGE LOW (A) : 57.470 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 \ REMARK 200 DATA REDUNDANCY : 4.500 \ REMARK 200 R MERGE (I) : 0.09000 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 25.6100 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 \ REMARK 200 COMPLETENESS FOR SHELL (%) : NULL \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: MOLREP \ REMARK 200 STARTING MODEL: 3TND \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 42.53 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M CAPS/ \ REMARK 280 SODIUM HYDROXIDE PH 10.5, 2M AMMONIUM SULFATE, VAPOR DIFFUSION, \ REMARK 280 SITTING DROP, TEMPERATURE 293K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.47100 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 13610 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 13400 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 ILE D 39 \ REMARK 465 ILE H 39 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC \ REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 \ REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A \ REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 \ REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE \ REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. \ REMARK 500 \ REMARK 500 DISTANCE CUTOFF: \ REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS \ REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE \ REMARK 500 OE2 GLU C 68 OE1 GLN E 75 1554 2.14 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES \ REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES \ REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES \ REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 MET B 61 50.07 39.03 \ REMARK 500 LYS C 18 59.41 36.37 \ REMARK 500 SER C 31 -1.96 69.48 \ REMARK 500 ASP C 73 -169.50 -101.96 \ REMARK 500 GLU D 65 75.45 71.45 \ REMARK 500 SER E 31 -0.51 73.83 \ REMARK 500 ALA E 52 64.97 -115.41 \ REMARK 500 GLU F 65 102.98 65.22 \ REMARK 500 SER G 31 -0.91 72.87 \ REMARK 500 GLU H 65 65.75 77.24 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA A 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP A 7 OD2 \ REMARK 620 2 ASP A 98 OD1 112.7 \ REMARK 620 N 1 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA C 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP C 7 OD2 \ REMARK 620 2 ASP C 98 OD1 130.3 \ REMARK 620 N 1 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA E 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP E 7 OD2 \ REMARK 620 2 HOH E 316 O 100.2 \ REMARK 620 N 1 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA G 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP G 7 OD2 \ REMARK 620 2 ASP G 98 OD1 127.6 \ REMARK 620 N 1 \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC2 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC3 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC4 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 201 \ DBREF 6IFC A 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC B 46 67 UNP Q7CPV2 VAPB_SALTY 46 67 \ DBREF 6IFC C 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC D 39 67 UNP Q7CPV2 VAPB_SALTY 39 67 \ DBREF 6IFC E 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC F 46 67 UNP Q7CPV2 VAPB_SALTY 46 67 \ DBREF 6IFC G 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC H 39 67 UNP Q7CPV2 VAPB_SALTY 39 67 \ SEQRES 1 A 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 A 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 A 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 A 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 A 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 A 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 A 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 A 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 A 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 A 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 A 132 TRP CYS \ SEQRES 1 B 22 SER TRP ASP SER TRP PHE ASP GLY GLU GLY ALA SER THR \ SEQRES 2 B 22 ASP PHE MET SER THR ARG GLU GLN PRO \ SEQRES 1 C 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 C 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 C 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 C 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 C 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 C 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 C 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 C 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 C 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 C 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 C 132 TRP CYS \ SEQRES 1 D 29 ILE ILE THR PRO VAL GLY GLU SER TRP ASP SER TRP PHE \ SEQRES 2 D 29 ASP GLY GLU GLY ALA SER THR ASP PHE MET SER THR ARG \ SEQRES 3 D 29 GLU GLN PRO \ SEQRES 1 E 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 E 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 E 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 E 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 E 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 E 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 E 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 E 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 E 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 E 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 E 132 TRP CYS \ SEQRES 1 F 22 SER TRP ASP SER TRP PHE ASP GLY GLU GLY ALA SER THR \ SEQRES 2 F 22 ASP PHE MET SER THR ARG GLU GLN PRO \ SEQRES 1 G 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 G 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 G 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 G 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 G 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 G 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 G 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 G 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 G 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 G 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 G 132 TRP CYS \ SEQRES 1 H 29 ILE ILE THR PRO VAL GLY GLU SER TRP ASP SER TRP PHE \ SEQRES 2 H 29 ASP GLY GLU GLY ALA SER THR ASP PHE MET SER THR ARG \ SEQRES 3 H 29 GLU GLN PRO \ HET CA A 201 1 \ HET CA C 201 1 \ HET CA E 201 1 \ HET CA G 201 1 \ HETNAM CA CALCIUM ION \ FORMUL 9 CA 4(CA 2+) \ FORMUL 13 HOH *206(H2 O) \ HELIX 1 AA1 ASP A 7 LYS A 18 1 12 \ HELIX 2 AA2 PRO A 19 ASN A 29 1 11 \ HELIX 3 AA3 SER A 37 SER A 50 1 14 \ HELIX 4 AA4 ALA A 52 ARG A 66 1 15 \ HELIX 5 AA5 ASP A 73 LYS A 90 1 18 \ HELIX 6 AA6 GLY A 95 ARG A 108 1 14 \ HELIX 7 AA7 ASN A 116 GLU A 121 1 6 \ HELIX 8 AA8 TRP B 47 ASP B 52 1 6 \ HELIX 9 AA9 ASP C 7 LYS C 18 1 12 \ HELIX 10 AB1 PRO C 19 ASN C 29 1 11 \ HELIX 11 AB2 SER C 37 SER C 50 1 14 \ HELIX 12 AB3 ALA C 52 SER C 65 1 14 \ HELIX 13 AB4 ASP C 73 GLY C 91 1 19 \ HELIX 14 AB5 GLY C 95 ARG C 108 1 14 \ HELIX 15 AB6 ASN C 116 ARG C 122 1 7 \ HELIX 16 AB7 SER D 46 ASP D 52 1 7 \ HELIX 17 AB8 ASP E 7 LYS E 18 1 12 \ HELIX 18 AB9 PRO E 19 ASN E 29 1 11 \ HELIX 19 AC1 SER E 37 SER E 50 1 14 \ HELIX 20 AC2 ALA E 52 ARG E 66 1 15 \ HELIX 21 AC3 ASP E 73 GLY E 91 1 19 \ HELIX 22 AC4 GLY E 95 ARG E 108 1 14 \ HELIX 23 AC5 ASN E 116 GLU E 121 1 6 \ HELIX 24 AC6 TRP F 47 ASP F 52 1 6 \ HELIX 25 AC7 ASP G 7 LYS G 18 1 12 \ HELIX 26 AC8 PRO G 19 ASN G 29 1 11 \ HELIX 27 AC9 SER G 37 SER G 50 1 14 \ HELIX 28 AD1 ALA G 52 SER G 65 1 14 \ HELIX 29 AD2 ASP G 73 GLY G 91 1 19 \ HELIX 30 AD3 GLY G 95 ARG G 108 1 14 \ HELIX 31 AD4 ASN G 116 GLU G 121 1 6 \ HELIX 32 AD5 SER H 46 GLY H 53 1 8 \ SHEET 1 AA110 GLU A 68 LEU A 70 0 \ SHEET 2 AA110 MET A 33 SER A 36 1 N ILE A 35 O LEU A 70 \ SHEET 3 AA110 PHE A 4 LEU A 6 1 N LEU A 6 O CYS A 34 \ SHEET 4 AA110 VAL A 111 VAL A 113 1 O VAL A 111 N MET A 5 \ SHEET 5 AA110 ARG A 127 GLU A 129 1 O ARG A 127 N VAL A 112 \ SHEET 6 AA110 ILE E 128 ASP E 130 1 O ASP E 130 N ILE A 128 \ SHEET 7 AA110 VAL E 111 VAL E 113 1 N VAL E 112 O GLU E 129 \ SHEET 8 AA110 PHE E 4 LEU E 6 1 N MET E 5 O VAL E 111 \ SHEET 9 AA110 MET E 33 SER E 36 1 O CYS E 34 N LEU E 6 \ SHEET 10 AA110 GLU E 68 LEU E 70 1 O LEU E 70 N ILE E 35 \ SHEET 1 AA2 5 GLU C 68 LEU C 70 0 \ SHEET 2 AA2 5 MET C 33 SER C 36 1 N ILE C 35 O LEU C 70 \ SHEET 3 AA2 5 PHE C 4 LEU C 6 1 N LEU C 6 O CYS C 34 \ SHEET 4 AA2 5 VAL C 111 VAL C 113 1 O VAL C 111 N MET C 5 \ SHEET 5 AA2 5 ILE C 128 GLU C 129 1 O GLU C 129 N VAL C 112 \ SHEET 1 AA3 5 GLU G 68 LEU G 70 0 \ SHEET 2 AA3 5 MET G 33 SER G 36 1 N ILE G 35 O LEU G 70 \ SHEET 3 AA3 5 PHE G 4 LEU G 6 1 N LEU G 6 O CYS G 34 \ SHEET 4 AA3 5 VAL G 111 VAL G 113 1 O VAL G 111 N MET G 5 \ SHEET 5 AA3 5 ILE G 128 GLU G 129 1 O GLU G 129 N VAL G 112 \ LINK OD2 ASP A 7 CA CA A 201 1555 1555 2.74 \ LINK OD1 ASP A 98 CA CA A 201 1555 1555 2.64 \ LINK OD2 ASP C 7 CA CA C 201 1555 1555 2.57 \ LINK OD1 ASP C 98 CA CA C 201 1555 1555 2.99 \ LINK OD2 ASP E 7 CA CA E 201 1555 1555 2.89 \ LINK CA CA E 201 O HOH E 316 1555 1555 2.99 \ LINK OD2 ASP G 7 CA CA G 201 1555 1555 2.88 \ LINK OD1 ASP G 98 CA CA G 201 1555 1555 2.78 \ SITE 1 AC1 5 ASP A 7 THR A 8 ASP A 98 ILE A 101 \ SITE 2 AC1 5 ARG B 64 \ SITE 1 AC2 5 ASP C 7 THR C 8 ASN C 9 ASP C 98 \ SITE 2 AC2 5 ARG D 64 \ SITE 1 AC3 6 ASP E 7 THR E 8 ASN E 9 ASP E 98 \ SITE 2 AC3 6 HOH E 316 ARG F 64 \ SITE 1 AC4 5 ASP G 7 THR G 8 ASN G 9 ASP G 98 \ SITE 2 AC4 5 ARG H 64 \ CRYST1 53.956 114.942 53.998 90.00 114.12 90.00 P 1 21 1 8 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.018534 0.000000 0.008299 0.00000 \ SCALE2 0.000000 0.008700 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.020291 0.00000 \ TER 1046 CYS A 132 \ ATOM 1047 N SER B 46 -14.071 -15.409 -5.073 1.00 60.35 N \ ATOM 1048 CA SER B 46 -14.869 -15.366 -3.799 1.00 51.32 C \ ATOM 1049 C SER B 46 -14.073 -14.619 -2.757 1.00 42.46 C \ ATOM 1050 O SER B 46 -12.838 -14.471 -2.904 1.00 42.92 O \ ATOM 1051 CB SER B 46 -15.117 -16.809 -3.297 1.00 53.09 C \ ATOM 1052 OG SER B 46 -13.884 -17.548 -3.174 1.00 44.26 O \ ATOM 1053 N TRP B 47 -14.702 -14.235 -1.648 1.00 38.58 N \ ATOM 1054 CA TRP B 47 -13.867 -13.881 -0.475 1.00 36.12 C \ ATOM 1055 C TRP B 47 -13.188 -15.127 0.094 1.00 32.88 C \ ATOM 1056 O TRP B 47 -12.100 -15.035 0.584 1.00 30.37 O \ ATOM 1057 CB TRP B 47 -14.629 -13.167 0.643 1.00 33.25 C \ ATOM 1058 CG TRP B 47 -14.822 -11.716 0.407 1.00 28.71 C \ ATOM 1059 CD1 TRP B 47 -15.993 -11.108 0.108 1.00 28.02 C \ ATOM 1060 CD2 TRP B 47 -13.837 -10.684 0.478 1.00 26.94 C \ ATOM 1061 NE1 TRP B 47 -15.814 -9.766 -0.021 1.00 29.26 N \ ATOM 1062 CE2 TRP B 47 -14.496 -9.471 0.198 1.00 27.11 C \ ATOM 1063 CE3 TRP B 47 -12.461 -10.666 0.746 1.00 29.32 C \ ATOM 1064 CZ2 TRP B 47 -13.853 -8.277 0.159 1.00 27.41 C \ ATOM 1065 CZ3 TRP B 47 -11.808 -9.459 0.694 1.00 30.66 C \ ATOM 1066 CH2 TRP B 47 -12.505 -8.269 0.429 1.00 28.24 C \ ATOM 1067 N ASP B 48 -13.855 -16.267 0.050 1.00 36.50 N \ ATOM 1068 CA ASP B 48 -13.307 -17.524 0.614 1.00 37.14 C \ ATOM 1069 C ASP B 48 -11.910 -17.837 0.073 1.00 34.95 C \ ATOM 1070 O ASP B 48 -11.017 -18.186 0.829 1.00 30.04 O \ ATOM 1071 CB ASP B 48 -14.227 -18.691 0.276 1.00 38.81 C \ ATOM 1072 CG ASP B 48 -15.547 -18.641 1.055 1.00 44.99 C \ ATOM 1073 OD1 ASP B 48 -15.851 -17.633 1.718 1.00 46.00 O \ ATOM 1074 OD2 ASP B 48 -16.284 -19.643 1.016 1.00 51.92 O \ ATOM 1075 N SER B 49 -11.740 -17.683 -1.230 1.00 32.57 N \ ATOM 1076 CA SER B 49 -10.472 -17.952 -1.865 1.00 34.51 C \ ATOM 1077 C SER B 49 -9.391 -16.963 -1.474 1.00 33.32 C \ ATOM 1078 O SER B 49 -8.197 -17.326 -1.387 1.00 31.41 O \ ATOM 1079 CB SER B 49 -10.620 -17.979 -3.374 1.00 37.92 C \ ATOM 1080 OG SER B 49 -10.706 -16.672 -3.896 1.00 43.47 O \ ATOM 1081 N TRP B 50 -9.792 -15.721 -1.179 1.00 28.57 N \ ATOM 1082 CA TRP B 50 -8.849 -14.747 -0.662 1.00 28.78 C \ ATOM 1083 C TRP B 50 -8.498 -15.091 0.786 1.00 28.35 C \ ATOM 1084 O TRP B 50 -7.338 -15.055 1.184 1.00 24.36 O \ ATOM 1085 CB TRP B 50 -9.411 -13.320 -0.757 1.00 28.70 C \ ATOM 1086 CG TRP B 50 -8.440 -12.307 -0.289 1.00 25.87 C \ ATOM 1087 CD1 TRP B 50 -7.412 -11.754 -1.017 1.00 22.68 C \ ATOM 1088 CD2 TRP B 50 -8.357 -11.738 1.005 1.00 26.35 C \ ATOM 1089 NE1 TRP B 50 -6.733 -10.898 -0.266 1.00 22.00 N \ ATOM 1090 CE2 TRP B 50 -7.249 -10.879 0.997 1.00 23.44 C \ ATOM 1091 CE3 TRP B 50 -9.106 -11.865 2.173 1.00 24.83 C \ ATOM 1092 CZ2 TRP B 50 -6.908 -10.113 2.076 1.00 24.85 C \ ATOM 1093 CZ3 TRP B 50 -8.722 -11.139 3.266 1.00 26.10 C \ ATOM 1094 CH2 TRP B 50 -7.655 -10.277 3.223 1.00 23.67 C \ ATOM 1095 N PHE B 51 -9.491 -15.470 1.573 1.00 27.17 N \ ATOM 1096 CA PHE B 51 -9.215 -15.756 2.988 1.00 26.61 C \ ATOM 1097 C PHE B 51 -8.362 -16.999 3.106 1.00 28.67 C \ ATOM 1098 O PHE B 51 -7.557 -17.100 4.046 1.00 27.84 O \ ATOM 1099 CB PHE B 51 -10.480 -15.936 3.839 1.00 28.02 C \ ATOM 1100 CG PHE B 51 -11.037 -14.653 4.359 1.00 28.47 C \ ATOM 1101 CD1 PHE B 51 -11.733 -13.813 3.522 1.00 28.20 C \ ATOM 1102 CD2 PHE B 51 -10.860 -14.282 5.692 1.00 30.24 C \ ATOM 1103 CE1 PHE B 51 -12.216 -12.617 3.989 1.00 28.74 C \ ATOM 1104 CE2 PHE B 51 -11.350 -13.088 6.166 1.00 30.66 C \ ATOM 1105 CZ PHE B 51 -12.029 -12.258 5.319 1.00 26.92 C \ ATOM 1106 N ASP B 52 -8.463 -17.909 2.131 1.00 28.48 N \ ATOM 1107 CA ASP B 52 -7.713 -19.140 2.286 1.00 30.61 C \ ATOM 1108 C ASP B 52 -6.428 -19.140 1.486 1.00 31.18 C \ ATOM 1109 O ASP B 52 -5.705 -20.131 1.511 1.00 36.77 O \ ATOM 1110 CB ASP B 52 -8.600 -20.304 1.882 1.00 29.04 C \ ATOM 1111 CG ASP B 52 -9.773 -20.512 2.847 1.00 33.91 C \ ATOM 1112 OD1 ASP B 52 -9.833 -19.972 3.996 1.00 33.85 O \ ATOM 1113 OD2 ASP B 52 -10.645 -21.294 2.449 1.00 44.74 O \ ATOM 1114 N GLY B 53 -6.153 -18.063 0.760 1.00 28.01 N \ ATOM 1115 CA GLY B 53 -5.082 -18.062 -0.221 1.00 27.70 C \ ATOM 1116 C GLY B 53 -3.746 -17.565 0.316 1.00 26.74 C \ ATOM 1117 O GLY B 53 -3.336 -17.826 1.445 1.00 27.02 O \ ATOM 1118 N GLU B 54 -3.067 -16.820 -0.514 1.00 27.79 N \ ATOM 1119 CA GLU B 54 -1.821 -16.229 -0.161 1.00 30.45 C \ ATOM 1120 C GLU B 54 -1.940 -15.395 1.145 1.00 27.80 C \ ATOM 1121 O GLU B 54 -2.908 -14.649 1.353 1.00 28.77 O \ ATOM 1122 CB GLU B 54 -1.332 -15.375 -1.347 1.00 35.45 C \ ATOM 1123 CG GLU B 54 0.169 -15.058 -1.303 1.00 40.69 C \ ATOM 1124 CD GLU B 54 0.691 -14.501 -2.619 1.00 50.03 C \ ATOM 1125 OE1 GLU B 54 1.919 -14.382 -2.764 1.00 58.81 O \ ATOM 1126 OE2 GLU B 54 -0.114 -14.196 -3.530 1.00 51.99 O \ ATOM 1127 N GLY B 55 -0.975 -15.565 2.050 1.00 23.81 N \ ATOM 1128 CA GLY B 55 -0.908 -14.821 3.314 1.00 22.44 C \ ATOM 1129 C GLY B 55 0.178 -13.769 3.168 1.00 26.44 C \ ATOM 1130 O GLY B 55 1.179 -13.990 2.463 1.00 29.49 O \ ATOM 1131 N ALA B 56 -0.048 -12.645 3.827 1.00 25.08 N \ ATOM 1132 CA ALA B 56 0.886 -11.605 4.021 1.00 27.46 C \ ATOM 1133 C ALA B 56 1.996 -12.064 4.971 1.00 29.15 C \ ATOM 1134 O ALA B 56 1.763 -12.918 5.847 1.00 28.96 O \ ATOM 1135 CB ALA B 56 0.170 -10.425 4.638 1.00 28.35 C \ ATOM 1136 N SER B 57 3.171 -11.496 4.798 1.00 26.61 N \ ATOM 1137 CA SER B 57 4.312 -11.754 5.713 1.00 29.38 C \ ATOM 1138 C SER B 57 3.974 -11.194 7.105 1.00 32.96 C \ ATOM 1139 O SER B 57 3.147 -10.254 7.242 1.00 32.50 O \ ATOM 1140 CB SER B 57 5.613 -11.167 5.147 1.00 28.37 C \ ATOM 1141 OG SER B 57 5.580 -9.742 4.967 1.00 29.67 O \ ATOM 1142 N THR B 58 4.553 -11.772 8.153 1.00 30.26 N \ ATOM 1143 CA THR B 58 4.095 -11.440 9.521 1.00 31.19 C \ ATOM 1144 C THR B 58 4.440 -9.989 9.903 1.00 31.91 C \ ATOM 1145 O THR B 58 3.846 -9.418 10.772 1.00 29.94 O \ ATOM 1146 CB THR B 58 4.699 -12.406 10.582 1.00 34.53 C \ ATOM 1147 OG1 THR B 58 6.113 -12.405 10.459 1.00 35.43 O \ ATOM 1148 CG2 THR B 58 4.240 -13.783 10.366 1.00 33.13 C \ ATOM 1149 N ASP B 59 5.419 -9.392 9.249 1.00 33.27 N \ ATOM 1150 CA ASP B 59 5.753 -7.986 9.503 1.00 33.63 C \ ATOM 1151 C ASP B 59 4.748 -6.961 8.895 1.00 34.62 C \ ATOM 1152 O ASP B 59 4.694 -5.788 9.320 1.00 28.19 O \ ATOM 1153 CB ASP B 59 7.145 -7.675 8.962 1.00 33.16 C \ ATOM 1154 CG ASP B 59 7.248 -7.853 7.455 1.00 33.65 C \ ATOM 1155 OD1 ASP B 59 6.989 -8.980 6.959 1.00 37.52 O \ ATOM 1156 OD2 ASP B 59 7.571 -6.867 6.764 1.00 35.99 O \ ATOM 1157 N PHE B 60 3.981 -7.375 7.903 1.00 29.93 N \ ATOM 1158 CA PHE B 60 3.088 -6.416 7.227 1.00 30.57 C \ ATOM 1159 C PHE B 60 2.313 -5.517 8.199 1.00 29.64 C \ ATOM 1160 O PHE B 60 1.510 -6.018 8.967 1.00 30.27 O \ ATOM 1161 CB PHE B 60 2.096 -7.166 6.373 1.00 28.18 C \ ATOM 1162 CG PHE B 60 1.070 -6.299 5.733 1.00 25.75 C \ ATOM 1163 CD1 PHE B 60 1.390 -5.526 4.637 1.00 26.41 C \ ATOM 1164 CD2 PHE B 60 -0.247 -6.327 6.178 1.00 25.44 C \ ATOM 1165 CE1 PHE B 60 0.404 -4.767 3.989 1.00 26.61 C \ ATOM 1166 CE2 PHE B 60 -1.231 -5.529 5.589 1.00 25.88 C \ ATOM 1167 CZ PHE B 60 -0.919 -4.759 4.477 1.00 25.63 C \ ATOM 1168 N MET B 61 2.578 -4.212 8.146 1.00 26.65 N \ ATOM 1169 CA MET B 61 1.916 -3.218 8.991 1.00 30.63 C \ ATOM 1170 C MET B 61 1.683 -3.692 10.414 1.00 34.64 C \ ATOM 1171 O MET B 61 0.535 -3.637 10.915 1.00 33.02 O \ ATOM 1172 CB MET B 61 0.555 -2.866 8.361 1.00 31.52 C \ ATOM 1173 CG MET B 61 0.776 -2.300 6.981 1.00 32.72 C \ ATOM 1174 SD MET B 61 -0.678 -1.584 6.219 1.00 35.17 S \ ATOM 1175 CE MET B 61 -0.465 0.103 6.832 1.00 34.97 C \ ATOM 1176 N SER B 62 2.740 -4.212 11.036 1.00 32.68 N \ ATOM 1177 CA SER B 62 2.636 -4.700 12.402 1.00 38.69 C \ ATOM 1178 C SER B 62 2.520 -3.475 13.351 1.00 46.19 C \ ATOM 1179 O SER B 62 1.926 -3.564 14.436 1.00 40.58 O \ ATOM 1180 CB SER B 62 3.798 -5.658 12.735 1.00 41.28 C \ ATOM 1181 OG SER B 62 5.043 -5.083 12.399 1.00 45.91 O \ ATOM 1182 N THR B 63 3.027 -2.325 12.899 1.00 48.41 N \ ATOM 1183 CA THR B 63 2.488 -1.034 13.322 1.00 57.71 C \ ATOM 1184 C THR B 63 1.989 -0.226 12.097 1.00 57.71 C \ ATOM 1185 O THR B 63 2.568 -0.263 10.994 1.00 63.11 O \ ATOM 1186 CB THR B 63 3.495 -0.226 14.161 1.00 60.12 C \ ATOM 1187 OG1 THR B 63 4.803 -0.368 13.599 1.00 70.86 O \ ATOM 1188 CG2 THR B 63 3.512 -0.742 15.616 1.00 63.47 C \ ATOM 1189 N ARG B 64 0.889 0.483 12.293 1.00 50.83 N \ ATOM 1190 CA ARG B 64 0.231 1.170 11.184 1.00 53.00 C \ ATOM 1191 C ARG B 64 0.975 2.442 10.656 1.00 55.74 C \ ATOM 1192 O ARG B 64 1.003 2.736 9.423 1.00 52.47 O \ ATOM 1193 CB ARG B 64 -1.195 1.502 11.600 1.00 43.93 C \ ATOM 1194 CG ARG B 64 -1.811 2.492 10.643 1.00 43.46 C \ ATOM 1195 CD ARG B 64 -3.187 2.773 11.121 1.00 39.35 C \ ATOM 1196 NE ARG B 64 -3.791 3.793 10.300 1.00 37.35 N \ ATOM 1197 CZ ARG B 64 -4.988 4.260 10.561 1.00 37.65 C \ ATOM 1198 NH1 ARG B 64 -5.609 3.778 11.615 1.00 39.97 N \ ATOM 1199 NH2 ARG B 64 -5.558 5.183 9.797 1.00 34.14 N \ ATOM 1200 N GLU B 65 1.562 3.183 11.600 1.00 60.30 N \ ATOM 1201 CA GLU B 65 2.425 4.349 11.321 1.00 61.95 C \ ATOM 1202 C GLU B 65 1.650 5.553 10.765 1.00 63.44 C \ ATOM 1203 O GLU B 65 2.102 6.221 9.828 1.00 56.95 O \ ATOM 1204 CB GLU B 65 3.619 3.981 10.411 1.00 67.02 C \ ATOM 1205 CG GLU B 65 4.415 2.765 10.887 1.00 71.16 C \ ATOM 1206 CD GLU B 65 5.724 2.553 10.124 1.00 81.79 C \ ATOM 1207 OE1 GLU B 65 5.797 2.914 8.929 1.00 88.22 O \ ATOM 1208 OE2 GLU B 65 6.693 2.023 10.714 1.00 83.24 O \ ATOM 1209 N GLN B 66 0.493 5.823 11.373 1.00 58.44 N \ ATOM 1210 CA GLN B 66 -0.250 7.064 11.162 1.00 61.42 C \ ATOM 1211 C GLN B 66 0.428 8.272 11.864 1.00 67.21 C \ ATOM 1212 O GLN B 66 0.450 8.318 13.092 1.00 66.62 O \ ATOM 1213 CB GLN B 66 -1.683 6.918 11.688 1.00 51.09 C \ ATOM 1214 CG GLN B 66 -2.504 8.182 11.505 1.00 47.68 C \ ATOM 1215 CD GLN B 66 -3.972 7.998 11.837 1.00 40.80 C \ ATOM 1216 OE1 GLN B 66 -4.806 8.506 11.152 1.00 30.80 O \ ATOM 1217 NE2 GLN B 66 -4.275 7.242 12.888 1.00 47.92 N \ ATOM 1218 N PRO B 67 0.968 9.250 11.088 1.00 69.02 N \ ATOM 1219 CA PRO B 67 1.568 10.448 11.680 1.00 72.90 C \ ATOM 1220 C PRO B 67 0.552 11.570 11.872 1.00 66.95 C \ ATOM 1221 O PRO B 67 0.480 12.147 12.956 1.00 71.93 O \ ATOM 1222 CB PRO B 67 2.624 10.854 10.641 1.00 74.07 C \ ATOM 1223 CG PRO B 67 2.051 10.400 9.335 1.00 72.89 C \ ATOM 1224 CD PRO B 67 1.076 9.278 9.614 1.00 72.06 C \ TER 1225 PRO B 67 \ TER 2271 CYS C 132 \ TER 2492 PRO D 67 \ TER 3538 CYS E 132 \ TER 3717 PRO F 67 \ TER 4763 CYS G 132 \ TER 4984 PRO H 67 \ HETATM 5039 O HOH B 101 -4.884 -13.925 -0.148 1.00 33.94 O \ HETATM 5040 O HOH B 102 0.802 -10.121 8.668 1.00 29.15 O \ HETATM 5041 O HOH B 103 -7.424 -20.002 -1.818 1.00 35.28 O \ HETATM 5042 O HOH B 104 -7.604 -15.933 -3.809 1.00 54.58 O \ HETATM 5043 O HOH B 105 -5.426 -18.633 5.267 1.00 27.03 O \ HETATM 5044 O HOH B 106 -4.269 -16.454 -3.211 1.00 39.28 O \ CONECT 60 4985 \ CONECT 776 4985 \ CONECT 1285 4986 \ CONECT 2001 4986 \ CONECT 2552 4987 \ CONECT 3777 4988 \ CONECT 4493 4988 \ CONECT 4985 60 776 \ CONECT 4986 1285 2001 \ CONECT 4987 2552 5129 \ CONECT 4988 3777 4493 \ CONECT 5129 4987 \ MASTER 370 0 4 32 20 0 8 6 5186 8 12 54 \ END \ """, "6ifcchainB") cmd.hide("all") cmd.color('grey70', "6ifcchainB") cmd.show('cartoon', "6ifcchainB") cmd.center("6ifcchainB", state=0, origin=1) cmd.zoom("6ifcchainB", animate=-1) cmd.select("e6ifcB1", "c. B & i. 46-67") cmd.color("red", "e6ifcB1") cmd.disable("e6ifcB1")