cmd.read_pdbstr("""\ HEADER PROTEIN TRANSPORT 12-APR-10 3MJH \ TITLE CRYSTAL STRUCTURE OF HUMAN RAB5A IN COMPLEX WITH THE C2H2 ZINC FINGER \ TITLE 2 OF EEA1 \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-5A; \ COMPND 3 CHAIN: A, C; \ COMPND 4 FRAGMENT: RESIDUES 16-183; \ COMPND 5 EC: 3.6.5.2; \ COMPND 6 ENGINEERED: YES; \ COMPND 7 MOL_ID: 2; \ COMPND 8 MOLECULE: EARLY ENDOSOME ANTIGEN 1; \ COMPND 9 CHAIN: B, D; \ COMPND 10 FRAGMENT: C2H2-TYPE, RESIDUES 36-69; \ COMPND 11 SYNONYM: ENDOSOME-ASSOCIATED PROTEIN P162, ZINC FINGER FYVE DOMAIN- \ COMPND 12 CONTAINING PROTEIN 2; \ COMPND 13 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 3 ORGANISM_COMMON: HUMAN; \ SOURCE 4 ORGANISM_TAXID: 9606; \ SOURCE 5 GENE: RAB5, RAB5A; \ SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 8 EXPRESSION_SYSTEM_STRAIN: K12, BL21 (DE3)CODON PLUS RIL CELLS; \ SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; \ SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET15B, MODIFIED PET28A,PGEX; \ SOURCE 11 MOL_ID: 2; \ SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 13 ORGANISM_COMMON: HUMAN; \ SOURCE 14 ORGANISM_TAXID: 9606; \ SOURCE 15 GENE: EARLY ENDOSOMAL ANTIGEN1(EEA1), EEA1, ZFYVE2; \ SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 18 EXPRESSION_SYSTEM_STRAIN: K12, BL21(DE3)CODON PLUS RIL CELLS; \ SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; \ SOURCE 20 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET15B \ KEYWDS PROTEIN-ZINC FINGER COMPLEX, BETA BETA ALPHA FOLD, BETA HAIRPIN, \ KEYWDS 2 RAB5A GTPASE, EEA1, PROTEIN TRANSPORT \ EXPDTA X-RAY DIFFRACTION \ AUTHOR A.K.MISHRA,S.EATHIRAJ,D.G.LAMBRIGHT \ REVDAT 5 04-MAR-26 3MJH 1 REMARK \ REVDAT 4 21-FEB-24 3MJH 1 REMARK \ REVDAT 3 06-OCT-21 3MJH 1 REMARK SEQADV LINK \ REVDAT 2 14-JUL-10 3MJH 1 JRNL \ REVDAT 1 05-MAY-10 3MJH 0 \ JRNL AUTH A.MISHRA,S.EATHIRAJ,S.CORVERA,D.G.LAMBRIGHT \ JRNL TITL STRUCTURAL BASIS FOR RAB GTPASE RECOGNITION AND ENDOSOME \ JRNL TITL 2 TETHERING BY THE C2H2 ZINC FINGER OF EARLY ENDOSOMAL \ JRNL TITL 3 AUTOANTIGEN 1 (EEA1). \ JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 10866 2010 \ JRNL REFN ISSN 0027-8424 \ JRNL PMID 20534488 \ JRNL DOI 10.1073/PNAS.1000843107 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.03 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.3.0037 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 \ REMARK 3 COMPLETENESS FOR RANGE (%) : 89.0 \ REMARK 3 NUMBER OF REFLECTIONS : 21886 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 \ REMARK 3 R VALUE (WORKING SET) : 0.192 \ REMARK 3 FREE R VALUE : 0.260 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 \ REMARK 3 FREE R VALUE TEST SET COUNT : 1157 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 1174 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.10 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 \ REMARK 3 BIN FREE R VALUE SET COUNT : 68 \ REMARK 3 BIN FREE R VALUE : 0.3370 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 3138 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 68 \ REMARK 3 SOLVENT ATOMS : 312 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : 35.34 \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.19 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 2.53000 \ REMARK 3 B22 (A**2) : -1.26000 \ REMARK 3 B33 (A**2) : -1.27000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 0.00000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 0.275 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.351 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3253 ; 0.009 ; 0.022 \ REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4404 ; 1.203 ; 1.969 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 398 ; 5.839 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 149 ;38.652 ;25.168 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 555 ;15.684 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;13.815 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 488 ; 0.081 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2416 ; 0.004 ; 0.020 \ REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1534 ; 0.203 ; 0.200 \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2201 ; 0.299 ; 0.200 \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 261 ; 0.122 ; 0.200 \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.091 ; 0.200 \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.217 ; 0.200 \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.218 ; 0.200 \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2046 ; 0.608 ; 1.500 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3184 ; 1.037 ; 2.000 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 1.417 ; 3.000 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 2.213 ; 4.500 \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : BABINET MODEL WITH MASK \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS \ REMARK 4 \ REMARK 4 3MJH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-10. \ REMARK 100 THE DEPOSITION ID IS D_1000058621. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 06-DEC-07 \ REMARK 200 TEMPERATURE (KELVIN) : 298 \ REMARK 200 PH : 5.0 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : N \ REMARK 200 RADIATION SOURCE : ROTATING ANODE \ REMARK 200 BEAMLINE : NULL \ REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 \ REMARK 200 MONOCHROMATOR : OSMIC MIRRORS \ REMARK 200 OPTICS : MIRRORS \ REMARK 200 \ REMARK 200 DETECTOR TYPE : IMAGE PLATE \ REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO \ REMARK 200 DATA SCALING SOFTWARE : SCALEPACK \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27931 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 \ REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 \ REMARK 200 DATA REDUNDANCY : 4.500 \ REMARK 200 R MERGE (I) : NULL \ REMARK 200 R SYM (I) : 0.04200 \ REMARK 200 FOR THE DATA SET : 44.7000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL \ REMARK 200 COMPLETENESS FOR SHELL (%) : NULL \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: AMORE \ REMARK 200 STARTING MODEL: NULL \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 42.72 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000, 50MM SODIUM ACETATE, \ REMARK 280 0.2M SODIUM-POTASSIUM PHOSPHATE, 10% GLYCEROL, PH 5.0, VAPOR \ REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.0K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X+1/2,-Y,Z+1/2 \ REMARK 290 3555 -X,Y+1/2,-Z+1/2 \ REMARK 290 4555 X+1/2,-Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.20600 \ REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.74750 \ REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.19900 \ REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.74750 \ REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.20600 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.19900 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1120 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 9870 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 9960 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 ASN C 16 \ REMARK 465 SER D 36 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 ASP A 66 -1.65 72.21 \ REMARK 500 LEU A 137 39.23 -98.84 \ REMARK 500 SER A 167 1.35 95.16 \ REMARK 500 ASN B 68 -163.81 -163.27 \ REMARK 500 GLN C 121 72.27 -161.83 \ REMARK 500 ALA C 122 -177.22 -172.16 \ REMARK 500 LEU C 137 50.58 -97.09 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 MG A 201 MG \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 SER A 34 OG \ REMARK 620 2 THR A 52 OG1 82.4 \ REMARK 620 3 GTP A 200 O2G 170.8 89.9 \ REMARK 620 4 GTP A 200 O2B 92.3 174.6 95.2 \ REMARK 620 5 HOH A 302 O 91.2 91.4 93.9 90.1 \ REMARK 620 6 HOH A 306 O 84.0 87.5 90.8 90.6 175.2 \ REMARK 620 N 1 2 3 4 5 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 ZN B 70 ZN \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 CYS B 43 SG \ REMARK 620 2 CYS B 46 SG 119.8 \ REMARK 620 3 HIS B 59 NE2 105.3 111.3 \ REMARK 620 4 HIS B 64 NE2 96.2 117.7 104.7 \ REMARK 620 N 1 2 3 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 MG C 201 MG \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 SER C 34 OG \ REMARK 620 2 THR C 52 OG1 79.8 \ REMARK 620 3 GTP C 200 O2B 92.5 172.0 \ REMARK 620 4 GTP C 200 O2G 169.8 90.1 97.6 \ REMARK 620 5 HOH C 272 O 89.9 87.3 90.8 90.7 \ REMARK 620 6 HOH C 274 O 81.0 88.7 92.1 97.9 170.5 \ REMARK 620 N 1 2 3 4 5 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 ZN D 70 ZN \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 CYS D 43 SG \ REMARK 620 2 CYS D 46 SG 117.0 \ REMARK 620 3 HIS D 59 NE2 103.4 109.5 \ REMARK 620 4 HIS D 64 NE2 103.4 112.6 110.3 \ REMARK 620 N 1 2 3 \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 200 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC2 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC3 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 70 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC4 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP C 200 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC5 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC6 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 70 \ DBREF 3MJH A 16 183 UNP P20339 RAB5A_HUMAN 16 183 \ DBREF 3MJH B 36 69 UNP Q15075 EEA1_HUMAN 36 69 \ DBREF 3MJH C 16 183 UNP P20339 RAB5A_HUMAN 16 183 \ DBREF 3MJH D 36 69 UNP Q15075 EEA1_HUMAN 36 69 \ SEQADV 3MJH LEU A 79 UNP P20339 GLN 79 ENGINEERED MUTATION \ SEQADV 3MJH LEU C 79 UNP P20339 GLN 79 ENGINEERED MUTATION \ SEQRES 1 A 168 ASN LYS ILE CYS GLN PHE LYS LEU VAL LEU LEU GLY GLU \ SEQRES 2 A 168 SER ALA VAL GLY LYS SER SER LEU VAL LEU ARG PHE VAL \ SEQRES 3 A 168 LYS GLY GLN PHE HIS GLU PHE GLN GLU SER THR ILE GLY \ SEQRES 4 A 168 ALA ALA PHE LEU THR GLN THR VAL CYS LEU ASP ASP THR \ SEQRES 5 A 168 THR VAL LYS PHE GLU ILE TRP ASP THR ALA GLY LEU GLU \ SEQRES 6 A 168 ARG TYR HIS SER LEU ALA PRO MET TYR TYR ARG GLY ALA \ SEQRES 7 A 168 GLN ALA ALA ILE VAL VAL TYR ASP ILE THR ASN GLU GLU \ SEQRES 8 A 168 SER PHE ALA ARG ALA LYS ASN TRP VAL LYS GLU LEU GLN \ SEQRES 9 A 168 ARG GLN ALA SER PRO ASN ILE VAL ILE ALA LEU SER GLY \ SEQRES 10 A 168 ASN LYS ALA ASP LEU ALA ASN LYS ARG ALA VAL ASP PHE \ SEQRES 11 A 168 GLN GLU ALA GLN SER TYR ALA ASP ASP ASN SER LEU LEU \ SEQRES 12 A 168 PHE MET GLU THR SER ALA LYS THR SER MET ASN VAL ASN \ SEQRES 13 A 168 GLU ILE PHE MET ALA ILE ALA LYS LYS LEU PRO LYS \ SEQRES 1 B 34 SER SER SER GLU GLY PHE ILE CYS PRO GLN CYS MET LYS \ SEQRES 2 B 34 SER LEU GLY SER ALA ASP GLU LEU PHE LYS HIS TYR GLU \ SEQRES 3 B 34 ALA VAL HIS ASP ALA GLY ASN ASP \ SEQRES 1 C 168 ASN LYS ILE CYS GLN PHE LYS LEU VAL LEU LEU GLY GLU \ SEQRES 2 C 168 SER ALA VAL GLY LYS SER SER LEU VAL LEU ARG PHE VAL \ SEQRES 3 C 168 LYS GLY GLN PHE HIS GLU PHE GLN GLU SER THR ILE GLY \ SEQRES 4 C 168 ALA ALA PHE LEU THR GLN THR VAL CYS LEU ASP ASP THR \ SEQRES 5 C 168 THR VAL LYS PHE GLU ILE TRP ASP THR ALA GLY LEU GLU \ SEQRES 6 C 168 ARG TYR HIS SER LEU ALA PRO MET TYR TYR ARG GLY ALA \ SEQRES 7 C 168 GLN ALA ALA ILE VAL VAL TYR ASP ILE THR ASN GLU GLU \ SEQRES 8 C 168 SER PHE ALA ARG ALA LYS ASN TRP VAL LYS GLU LEU GLN \ SEQRES 9 C 168 ARG GLN ALA SER PRO ASN ILE VAL ILE ALA LEU SER GLY \ SEQRES 10 C 168 ASN LYS ALA ASP LEU ALA ASN LYS ARG ALA VAL ASP PHE \ SEQRES 11 C 168 GLN GLU ALA GLN SER TYR ALA ASP ASP ASN SER LEU LEU \ SEQRES 12 C 168 PHE MET GLU THR SER ALA LYS THR SER MET ASN VAL ASN \ SEQRES 13 C 168 GLU ILE PHE MET ALA ILE ALA LYS LYS LEU PRO LYS \ SEQRES 1 D 34 SER SER SER GLU GLY PHE ILE CYS PRO GLN CYS MET LYS \ SEQRES 2 D 34 SER LEU GLY SER ALA ASP GLU LEU PHE LYS HIS TYR GLU \ SEQRES 3 D 34 ALA VAL HIS ASP ALA GLY ASN ASP \ HET GTP A 200 32 \ HET MG A 201 1 \ HET ZN B 70 1 \ HET GTP C 200 32 \ HET MG C 201 1 \ HET ZN D 70 1 \ HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE \ HETNAM MG MAGNESIUM ION \ HETNAM ZN ZINC ION \ FORMUL 5 GTP 2(C10 H16 N5 O14 P3) \ FORMUL 6 MG 2(MG 2+) \ FORMUL 7 ZN 2(ZN 2+) \ FORMUL 11 HOH *312(H2 O) \ HELIX 1 1 GLY A 32 GLY A 43 1 12 \ HELIX 2 2 LEU A 79 SER A 84 5 6 \ HELIX 3 3 LEU A 85 ARG A 91 1 7 \ HELIX 4 4 ASN A 104 ALA A 122 1 19 \ HELIX 5 5 LYS A 134 ARG A 141 5 8 \ HELIX 6 6 ASP A 144 ASP A 154 1 11 \ HELIX 7 7 ASN A 169 LEU A 181 1 13 \ HELIX 8 8 SER B 52 HIS B 64 1 13 \ HELIX 9 9 GLY C 32 GLY C 43 1 12 \ HELIX 10 10 LEU C 79 SER C 84 5 6 \ HELIX 11 11 LEU C 85 ARG C 91 1 7 \ HELIX 12 12 ASN C 104 GLN C 121 1 18 \ HELIX 13 13 LEU C 137 ARG C 141 5 5 \ HELIX 14 14 ASP C 144 ASN C 155 1 12 \ HELIX 15 15 ASN C 169 LEU C 181 1 13 \ HELIX 16 16 SER D 52 HIS D 64 1 13 \ SHEET 1 A 8 LEU A 158 GLU A 161 0 \ SHEET 2 A 8 VAL A 127 ASN A 133 1 N LEU A 130 O LEU A 158 \ SHEET 3 A 8 ALA A 95 ASP A 101 1 N ALA A 96 O ALA A 129 \ SHEET 4 A 8 LYS A 17 LEU A 26 1 N LEU A 26 O VAL A 99 \ SHEET 5 A 8 THR A 67 THR A 76 1 O LYS A 70 N CYS A 19 \ SHEET 6 A 8 ALA A 55 LEU A 64 -1 N LEU A 58 O ILE A 73 \ SHEET 7 A 8 GLU B 39 ILE B 42 -1 O GLY B 40 N ALA A 55 \ SHEET 8 A 8 SER B 49 LEU B 50 -1 O LEU B 50 N PHE B 41 \ SHEET 1 B 8 LEU C 158 GLU C 161 0 \ SHEET 2 B 8 VAL C 127 ASN C 133 1 N LEU C 130 O LEU C 158 \ SHEET 3 B 8 ALA C 95 ASP C 101 1 N ALA C 96 O ALA C 129 \ SHEET 4 B 8 ILE C 18 LEU C 26 1 N VAL C 24 O ILE C 97 \ SHEET 5 B 8 THR C 68 THR C 76 1 O GLU C 72 N LEU C 23 \ SHEET 6 B 8 ALA C 55 CYS C 63 -1 N LEU C 58 O ILE C 73 \ SHEET 7 B 8 GLU D 39 ILE D 42 -1 O GLY D 40 N ALA C 55 \ SHEET 8 B 8 SER D 49 LEU D 50 -1 O LEU D 50 N PHE D 41 \ LINK OG SER A 34 MG MG A 201 1555 1555 2.19 \ LINK OG1 THR A 52 MG MG A 201 1555 1555 2.03 \ LINK O2G GTP A 200 MG MG A 201 1555 1555 2.03 \ LINK O2B GTP A 200 MG MG A 201 1555 1555 2.10 \ LINK MG MG A 201 O HOH A 302 1555 1555 2.03 \ LINK MG MG A 201 O HOH A 306 1555 1555 2.31 \ LINK SG CYS B 43 ZN ZN B 70 1555 1555 2.27 \ LINK SG CYS B 46 ZN ZN B 70 1555 1555 2.28 \ LINK NE2 HIS B 59 ZN ZN B 70 1555 1555 2.05 \ LINK NE2 HIS B 64 ZN ZN B 70 1555 1555 2.26 \ LINK OG SER C 34 MG MG C 201 1555 1555 2.05 \ LINK OG1 THR C 52 MG MG C 201 1555 1555 2.25 \ LINK O2B GTP C 200 MG MG C 201 1555 1555 1.98 \ LINK O2G GTP C 200 MG MG C 201 1555 1555 2.05 \ LINK MG MG C 201 O HOH C 272 1555 1555 2.18 \ LINK MG MG C 201 O HOH C 274 1555 1555 2.10 \ LINK SG CYS D 43 ZN ZN D 70 1555 1555 2.32 \ LINK SG CYS D 46 ZN ZN D 70 1555 1555 2.43 \ LINK NE2 HIS D 59 ZN ZN D 70 1555 1555 1.96 \ LINK NE2 HIS D 64 ZN ZN D 70 1555 1555 2.07 \ SITE 1 AC1 26 HOH A 6 SER A 29 ALA A 30 VAL A 31 \ SITE 2 AC1 26 GLY A 32 LYS A 33 SER A 34 SER A 35 \ SITE 3 AC1 26 PHE A 45 HIS A 46 GLU A 47 GLN A 49 \ SITE 4 AC1 26 SER A 51 THR A 52 GLY A 78 ASN A 133 \ SITE 5 AC1 26 LYS A 134 ASP A 136 SER A 163 ALA A 164 \ SITE 6 AC1 26 LYS A 165 HOH A 196 MG A 201 HOH A 259 \ SITE 7 AC1 26 HOH A 302 HOH A 306 \ SITE 1 AC2 5 SER A 34 THR A 52 GTP A 200 HOH A 302 \ SITE 2 AC2 5 HOH A 306 \ SITE 1 AC3 4 CYS B 43 CYS B 46 HIS B 59 HIS B 64 \ SITE 1 AC4 26 HOH C 12 SER C 29 ALA C 30 VAL C 31 \ SITE 2 AC4 26 GLY C 32 LYS C 33 SER C 34 SER C 35 \ SITE 3 AC4 26 PHE C 45 HIS C 46 GLU C 47 GLN C 49 \ SITE 4 AC4 26 THR C 52 GLY C 78 ASN C 133 LYS C 134 \ SITE 5 AC4 26 ASP C 136 LEU C 137 SER C 163 ALA C 164 \ SITE 6 AC4 26 LYS C 165 HOH C 193 MG C 201 HOH C 272 \ SITE 7 AC4 26 HOH C 274 HOH C 306 \ SITE 1 AC5 5 SER C 34 THR C 52 GTP C 200 HOH C 272 \ SITE 2 AC5 5 HOH C 274 \ SITE 1 AC6 4 CYS D 43 CYS D 46 HIS D 59 HIS D 64 \ CRYST1 46.412 80.398 103.495 90.00 90.00 90.00 P 21 21 21 8 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.021546 0.000000 0.000000 0.00000 \ SCALE2 0.000000 0.012438 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.009662 0.00000 \ TER 1322 LYS A 183 \ TER 1578 ASP B 69 \ TER 2892 LYS C 183 \ ATOM 2893 N SER D 37 24.979 15.044 20.019 1.00 55.26 N \ ATOM 2894 CA SER D 37 24.828 13.557 19.929 1.00 55.22 C \ ATOM 2895 C SER D 37 23.511 13.053 20.536 1.00 55.10 C \ ATOM 2896 O SER D 37 23.226 11.852 20.494 1.00 55.00 O \ ATOM 2897 CB SER D 37 26.013 12.845 20.597 1.00 55.19 C \ ATOM 2898 OG SER D 37 27.253 13.304 20.090 1.00 55.20 O \ ATOM 2899 N SER D 38 22.725 13.963 21.110 1.00 54.65 N \ ATOM 2900 CA SER D 38 21.413 13.600 21.655 1.00 54.50 C \ ATOM 2901 C SER D 38 20.274 14.287 20.893 1.00 53.93 C \ ATOM 2902 O SER D 38 19.107 14.155 21.260 1.00 53.63 O \ ATOM 2903 CB SER D 38 21.327 13.900 23.158 1.00 54.57 C \ ATOM 2904 OG SER D 38 21.085 15.279 23.390 1.00 54.74 O \ ATOM 2905 N GLU D 39 20.626 15.025 19.838 1.00 53.44 N \ ATOM 2906 CA GLU D 39 19.635 15.555 18.902 1.00 52.77 C \ ATOM 2907 C GLU D 39 19.943 15.090 17.481 1.00 52.29 C \ ATOM 2908 O GLU D 39 21.095 14.786 17.131 1.00 52.08 O \ ATOM 2909 CB GLU D 39 19.531 17.094 18.958 1.00 52.97 C \ ATOM 2910 CG GLU D 39 18.282 17.653 18.228 1.00 52.60 C \ ATOM 2911 CD GLU D 39 18.274 19.170 18.071 1.00 52.97 C \ ATOM 2912 OE1 GLU D 39 18.380 19.893 19.093 1.00 51.07 O \ ATOM 2913 OE2 GLU D 39 18.132 19.638 16.917 1.00 53.49 O \ ATOM 2914 N GLY D 40 18.890 15.040 16.676 1.00 51.27 N \ ATOM 2915 CA GLY D 40 18.983 14.634 15.296 1.00 50.13 C \ ATOM 2916 C GLY D 40 18.019 13.500 15.052 1.00 49.23 C \ ATOM 2917 O GLY D 40 17.013 13.338 15.766 1.00 48.69 O \ ATOM 2918 N PHE D 41 18.346 12.693 14.051 1.00 48.05 N \ ATOM 2919 CA PHE D 41 17.461 11.631 13.617 1.00 46.47 C \ ATOM 2920 C PHE D 41 17.824 10.327 14.313 1.00 45.59 C \ ATOM 2921 O PHE D 41 18.350 9.385 13.707 1.00 45.91 O \ ATOM 2922 CB PHE D 41 17.493 11.543 12.098 1.00 46.20 C \ ATOM 2923 CG PHE D 41 17.303 12.870 11.425 1.00 45.42 C \ ATOM 2924 CD1 PHE D 41 18.365 13.494 10.774 1.00 45.21 C \ ATOM 2925 CD2 PHE D 41 16.070 13.517 11.465 1.00 44.50 C \ ATOM 2926 CE1 PHE D 41 18.196 14.721 10.148 1.00 45.32 C \ ATOM 2927 CE2 PHE D 41 15.893 14.747 10.842 1.00 45.30 C \ ATOM 2928 CZ PHE D 41 16.959 15.352 10.180 1.00 45.02 C \ ATOM 2929 N ILE D 42 17.545 10.305 15.614 1.00 44.09 N \ ATOM 2930 CA ILE D 42 17.834 9.168 16.482 1.00 42.42 C \ ATOM 2931 C ILE D 42 16.571 8.324 16.649 1.00 41.49 C \ ATOM 2932 O ILE D 42 15.480 8.865 16.863 1.00 40.72 O \ ATOM 2933 CB ILE D 42 18.332 9.653 17.856 1.00 42.74 C \ ATOM 2934 CG1 ILE D 42 19.557 10.559 17.674 1.00 42.92 C \ ATOM 2935 CG2 ILE D 42 18.641 8.468 18.792 1.00 42.67 C \ ATOM 2936 CD1 ILE D 42 19.624 11.707 18.644 1.00 44.48 C \ ATOM 2937 N CYS D 43 16.716 7.005 16.526 1.00 39.79 N \ ATOM 2938 CA CYS D 43 15.584 6.092 16.709 1.00 39.56 C \ ATOM 2939 C CYS D 43 15.195 5.956 18.185 1.00 39.67 C \ ATOM 2940 O CYS D 43 16.011 5.555 19.005 1.00 39.24 O \ ATOM 2941 CB CYS D 43 15.859 4.716 16.089 1.00 39.47 C \ ATOM 2942 SG CYS D 43 14.541 3.527 16.402 1.00 37.06 S \ ATOM 2943 N PRO D 44 13.944 6.313 18.522 1.00 39.76 N \ ATOM 2944 CA PRO D 44 13.447 6.267 19.887 1.00 40.38 C \ ATOM 2945 C PRO D 44 13.249 4.869 20.464 1.00 41.12 C \ ATOM 2946 O PRO D 44 13.077 4.735 21.679 1.00 41.41 O \ ATOM 2947 CB PRO D 44 12.099 6.982 19.787 1.00 40.42 C \ ATOM 2948 CG PRO D 44 11.676 6.783 18.383 1.00 39.34 C \ ATOM 2949 CD PRO D 44 12.932 6.853 17.596 1.00 39.86 C \ ATOM 2950 N GLN D 45 13.271 3.843 19.617 1.00 41.52 N \ ATOM 2951 CA GLN D 45 13.053 2.484 20.090 1.00 42.47 C \ ATOM 2952 C GLN D 45 14.354 1.768 20.479 1.00 42.82 C \ ATOM 2953 O GLN D 45 14.395 1.104 21.507 1.00 42.89 O \ ATOM 2954 CB GLN D 45 12.233 1.663 19.084 1.00 42.52 C \ ATOM 2955 CG GLN D 45 11.667 0.350 19.656 1.00 44.32 C \ ATOM 2956 CD GLN D 45 10.590 0.554 20.718 1.00 46.09 C \ ATOM 2957 OE1 GLN D 45 9.918 1.588 20.764 1.00 47.36 O \ ATOM 2958 NE2 GLN D 45 10.418 -0.444 21.571 1.00 47.11 N \ ATOM 2959 N CYS D 46 15.405 1.916 19.676 1.00 43.20 N \ ATOM 2960 CA CYS D 46 16.678 1.253 19.967 1.00 44.19 C \ ATOM 2961 C CYS D 46 17.867 2.201 20.184 1.00 45.16 C \ ATOM 2962 O CYS D 46 18.960 1.744 20.511 1.00 45.39 O \ ATOM 2963 CB CYS D 46 17.015 0.234 18.875 1.00 43.86 C \ ATOM 2964 SG CYS D 46 17.541 0.973 17.337 1.00 41.48 S \ ATOM 2965 N MET D 47 17.639 3.503 19.992 1.00 46.08 N \ ATOM 2966 CA MET D 47 18.647 4.571 20.199 1.00 47.39 C \ ATOM 2967 C MET D 47 19.716 4.702 19.101 1.00 48.10 C \ ATOM 2968 O MET D 47 20.651 5.498 19.231 1.00 48.11 O \ ATOM 2969 CB MET D 47 19.287 4.500 21.592 1.00 47.27 C \ ATOM 2970 CG MET D 47 18.294 4.583 22.742 1.00 47.56 C \ ATOM 2971 SD MET D 47 17.220 6.034 22.702 1.00 47.67 S \ ATOM 2972 CE MET D 47 18.411 7.360 22.905 1.00 46.70 C \ ATOM 2973 N LYS D 48 19.537 3.969 18.004 1.00 48.70 N \ ATOM 2974 CA LYS D 48 20.432 4.051 16.861 1.00 49.14 C \ ATOM 2975 C LYS D 48 20.268 5.454 16.271 1.00 49.63 C \ ATOM 2976 O LYS D 48 19.192 5.961 16.182 1.00 49.60 O \ ATOM 2977 CB LYS D 48 20.049 3.026 15.811 1.00 20.00 C \ ATOM 2978 CG LYS D 48 20.308 1.602 16.257 1.00 20.00 C \ ATOM 2979 CD LYS D 48 20.066 0.525 15.157 1.00 20.00 C \ ATOM 2980 CE LYS D 48 21.097 0.619 14.061 1.00 20.00 C \ ATOM 2981 NZ LYS D 48 22.372 0.192 14.661 1.00 20.00 N \ ATOM 2982 N SER D 49 21.350 6.090 15.846 1.00 50.12 N \ ATOM 2983 CA SER D 49 21.312 7.390 15.234 1.00 50.62 C \ ATOM 2984 C SER D 49 21.650 7.281 13.769 1.00 50.83 C \ ATOM 2985 O SER D 49 22.550 6.558 13.405 1.00 51.17 O \ ATOM 2986 CB SER D 49 22.301 8.309 15.918 1.00 50.75 C \ ATOM 2987 OG SER D 49 22.564 9.450 15.171 1.00 51.13 O \ ATOM 2988 N LEU D 50 20.915 8.002 12.921 1.00 51.10 N \ ATOM 2989 CA LEU D 50 21.047 7.935 11.461 1.00 50.85 C \ ATOM 2990 C LEU D 50 21.199 9.325 10.826 1.00 50.78 C \ ATOM 2991 O LEU D 50 20.692 10.319 11.350 1.00 50.60 O \ ATOM 2992 CB LEU D 50 19.866 7.168 10.840 1.00 51.05 C \ ATOM 2993 CG LEU D 50 19.600 5.757 11.389 1.00 50.98 C \ ATOM 2994 CD1 LEU D 50 18.390 5.759 12.315 1.00 51.32 C \ ATOM 2995 CD2 LEU D 50 19.397 4.750 10.280 1.00 51.16 C \ ATOM 2996 N GLY D 51 21.894 9.380 9.691 1.00 50.44 N \ ATOM 2997 CA GLY D 51 22.307 10.647 9.074 1.00 49.92 C \ ATOM 2998 C GLY D 51 21.239 11.553 8.478 1.00 49.65 C \ ATOM 2999 O GLY D 51 21.525 12.706 8.136 1.00 49.72 O \ ATOM 3000 N SER D 52 20.017 11.043 8.346 1.00 49.19 N \ ATOM 3001 CA SER D 52 18.923 11.794 7.733 1.00 48.60 C \ ATOM 3002 C SER D 52 17.558 11.282 8.190 1.00 47.89 C \ ATOM 3003 O SER D 52 17.452 10.173 8.714 1.00 47.79 O \ ATOM 3004 CB SER D 52 19.033 11.744 6.206 1.00 48.88 C \ ATOM 3005 OG SER D 52 18.948 10.410 5.738 1.00 49.92 O \ ATOM 3006 N ALA D 53 16.532 12.070 7.961 1.00 47.21 N \ ATOM 3007 CA ALA D 53 15.187 11.707 8.362 1.00 46.92 C \ ATOM 3008 C ALA D 53 14.682 10.563 7.519 1.00 46.57 C \ ATOM 3009 O ALA D 53 14.042 9.666 7.995 1.00 46.30 O \ ATOM 3010 CB ALA D 53 14.273 12.864 8.239 1.00 46.73 C \ ATOM 3011 N ASP D 54 14.969 10.618 6.245 1.00 46.19 N \ ATOM 3012 CA ASP D 54 14.630 9.531 5.381 1.00 46.08 C \ ATOM 3013 C ASP D 54 15.221 8.221 5.870 1.00 45.07 C \ ATOM 3014 O ASP D 54 14.516 7.269 6.020 1.00 44.66 O \ ATOM 3015 CB ASP D 54 15.062 9.860 3.976 1.00 46.59 C \ ATOM 3016 CG ASP D 54 13.919 10.049 3.084 1.00 48.50 C \ ATOM 3017 OD1 ASP D 54 13.540 11.201 2.883 1.00 49.83 O \ ATOM 3018 OD2 ASP D 54 13.369 9.037 2.615 1.00 50.41 O \ ATOM 3019 N GLU D 55 16.524 8.192 6.108 1.00 44.23 N \ ATOM 3020 CA GLU D 55 17.189 7.049 6.679 1.00 43.49 C \ ATOM 3021 C GLU D 55 16.493 6.525 7.939 1.00 42.11 C \ ATOM 3022 O GLU D 55 16.318 5.362 8.102 1.00 41.70 O \ ATOM 3023 CB GLU D 55 18.634 7.379 7.010 1.00 43.81 C \ ATOM 3024 CG GLU D 55 19.606 7.439 5.849 1.00 45.20 C \ ATOM 3025 CD GLU D 55 20.985 7.953 6.257 1.00 45.41 C \ ATOM 3026 OE1 GLU D 55 21.147 9.146 6.514 1.00 47.92 O \ ATOM 3027 OE2 GLU D 55 21.918 7.159 6.330 1.00 48.80 O \ ATOM 3028 N LEU D 56 16.123 7.413 8.830 1.00 40.78 N \ ATOM 3029 CA LEU D 56 15.489 7.061 10.097 1.00 39.31 C \ ATOM 3030 C LEU D 56 14.144 6.361 9.870 1.00 38.67 C \ ATOM 3031 O LEU D 56 13.865 5.333 10.491 1.00 38.35 O \ ATOM 3032 CB LEU D 56 15.298 8.321 10.959 1.00 39.23 C \ ATOM 3033 CG LEU D 56 14.438 8.216 12.225 1.00 38.47 C \ ATOM 3034 CD1 LEU D 56 14.951 7.126 13.201 1.00 37.63 C \ ATOM 3035 CD2 LEU D 56 14.340 9.570 12.908 1.00 38.74 C \ ATOM 3036 N PHE D 57 13.320 6.939 8.997 1.00 38.39 N \ ATOM 3037 CA PHE D 57 11.998 6.389 8.699 1.00 38.36 C \ ATOM 3038 C PHE D 57 12.111 5.002 8.079 1.00 38.20 C \ ATOM 3039 O PHE D 57 11.348 4.104 8.424 1.00 37.99 O \ ATOM 3040 CB PHE D 57 11.185 7.329 7.804 1.00 38.36 C \ ATOM 3041 CG PHE D 57 9.782 6.831 7.507 1.00 38.72 C \ ATOM 3042 CD1 PHE D 57 8.757 6.985 8.442 1.00 38.69 C \ ATOM 3043 CD2 PHE D 57 9.493 6.210 6.291 1.00 38.53 C \ ATOM 3044 CE1 PHE D 57 7.460 6.527 8.171 1.00 38.22 C \ ATOM 3045 CE2 PHE D 57 8.188 5.746 6.007 1.00 37.84 C \ ATOM 3046 CZ PHE D 57 7.178 5.910 6.947 1.00 37.50 C \ ATOM 3047 N LYS D 58 13.074 4.831 7.177 1.00 38.20 N \ ATOM 3048 CA LYS D 58 13.352 3.517 6.600 1.00 38.31 C \ ATOM 3049 C LYS D 58 13.831 2.491 7.633 1.00 37.63 C \ ATOM 3050 O LYS D 58 13.397 1.342 7.597 1.00 37.54 O \ ATOM 3051 CB LYS D 58 14.315 3.633 5.416 1.00 38.73 C \ ATOM 3052 CG LYS D 58 13.604 4.003 4.117 1.00 40.54 C \ ATOM 3053 CD LYS D 58 14.556 4.575 3.086 1.00 42.90 C \ ATOM 3054 CE LYS D 58 13.811 5.442 2.084 1.00 44.25 C \ ATOM 3055 NZ LYS D 58 14.762 6.151 1.183 1.00 45.12 N \ ATOM 3056 N HIS D 59 14.687 2.905 8.569 1.00 36.71 N \ ATOM 3057 CA HIS D 59 15.108 2.010 9.658 1.00 35.70 C \ ATOM 3058 C HIS D 59 13.935 1.602 10.523 1.00 35.55 C \ ATOM 3059 O HIS D 59 13.755 0.426 10.811 1.00 35.39 O \ ATOM 3060 CB HIS D 59 16.208 2.640 10.538 1.00 35.58 C \ ATOM 3061 CG HIS D 59 16.270 2.082 11.937 1.00 32.82 C \ ATOM 3062 ND1 HIS D 59 16.905 0.894 12.241 1.00 31.82 N \ ATOM 3063 CD2 HIS D 59 15.798 2.563 13.112 1.00 32.35 C \ ATOM 3064 CE1 HIS D 59 16.803 0.658 13.539 1.00 31.90 C \ ATOM 3065 NE2 HIS D 59 16.141 1.659 14.097 1.00 29.00 N \ ATOM 3066 N TYR D 60 13.149 2.587 10.951 1.00 35.42 N \ ATOM 3067 CA TYR D 60 12.024 2.333 11.854 1.00 35.52 C \ ATOM 3068 C TYR D 60 10.965 1.416 11.225 1.00 35.33 C \ ATOM 3069 O TYR D 60 10.404 0.560 11.900 1.00 35.68 O \ ATOM 3070 CB TYR D 60 11.385 3.654 12.293 1.00 35.09 C \ ATOM 3071 CG TYR D 60 10.402 3.507 13.429 1.00 35.64 C \ ATOM 3072 CD1 TYR D 60 10.830 3.594 14.758 1.00 35.16 C \ ATOM 3073 CD2 TYR D 60 9.044 3.291 13.185 1.00 34.90 C \ ATOM 3074 CE1 TYR D 60 9.944 3.466 15.810 1.00 35.67 C \ ATOM 3075 CE2 TYR D 60 8.144 3.158 14.239 1.00 35.60 C \ ATOM 3076 CZ TYR D 60 8.606 3.243 15.548 1.00 36.16 C \ ATOM 3077 OH TYR D 60 7.736 3.127 16.603 1.00 36.78 O \ ATOM 3078 N GLU D 61 10.688 1.615 9.941 1.00 35.40 N \ ATOM 3079 CA GLU D 61 9.719 0.783 9.215 1.00 35.68 C \ ATOM 3080 C GLU D 61 10.225 -0.658 9.075 1.00 36.19 C \ ATOM 3081 O GLU D 61 9.467 -1.605 9.227 1.00 36.84 O \ ATOM 3082 CB GLU D 61 9.403 1.383 7.834 1.00 35.03 C \ ATOM 3083 CG GLU D 61 8.623 2.709 7.839 1.00 33.17 C \ ATOM 3084 CD GLU D 61 7.272 2.626 8.548 1.00 32.97 C \ ATOM 3085 OE1 GLU D 61 6.239 2.583 7.863 1.00 33.07 O \ ATOM 3086 OE2 GLU D 61 7.231 2.606 9.794 1.00 32.80 O \ ATOM 3087 N ALA D 62 11.517 -0.809 8.807 1.00 36.93 N \ ATOM 3088 CA ALA D 62 12.124 -2.120 8.627 1.00 37.18 C \ ATOM 3089 C ALA D 62 12.200 -2.914 9.925 1.00 37.62 C \ ATOM 3090 O ALA D 62 12.011 -4.130 9.919 1.00 37.60 O \ ATOM 3091 CB ALA D 62 13.517 -1.981 8.012 1.00 37.28 C \ ATOM 3092 N VAL D 63 12.471 -2.233 11.038 1.00 37.54 N \ ATOM 3093 CA VAL D 63 12.813 -2.933 12.280 1.00 37.55 C \ ATOM 3094 C VAL D 63 11.702 -2.882 13.338 1.00 37.15 C \ ATOM 3095 O VAL D 63 11.445 -3.871 14.039 1.00 37.12 O \ ATOM 3096 CB VAL D 63 14.178 -2.420 12.848 1.00 37.60 C \ ATOM 3097 CG1 VAL D 63 14.619 -3.225 14.052 1.00 38.47 C \ ATOM 3098 CG2 VAL D 63 15.250 -2.461 11.769 1.00 38.22 C \ ATOM 3099 N HIS D 64 11.031 -1.739 13.445 1.00 36.92 N \ ATOM 3100 CA HIS D 64 10.129 -1.507 14.567 1.00 36.52 C \ ATOM 3101 C HIS D 64 8.658 -1.435 14.170 1.00 36.74 C \ ATOM 3102 O HIS D 64 7.769 -1.473 15.030 1.00 36.39 O \ ATOM 3103 CB HIS D 64 10.539 -0.224 15.293 1.00 36.71 C \ ATOM 3104 CG HIS D 64 11.958 -0.229 15.769 1.00 36.17 C \ ATOM 3105 ND1 HIS D 64 12.424 -1.126 16.703 1.00 36.29 N \ ATOM 3106 CD2 HIS D 64 13.012 0.549 15.437 1.00 36.48 C \ ATOM 3107 CE1 HIS D 64 13.705 -0.901 16.928 1.00 37.42 C \ ATOM 3108 NE2 HIS D 64 14.086 0.116 16.177 1.00 36.85 N \ ATOM 3109 N ASP D 65 8.411 -1.302 12.871 1.00 36.54 N \ ATOM 3110 CA ASP D 65 7.058 -1.182 12.353 1.00 36.61 C \ ATOM 3111 C ASP D 65 6.908 -2.064 11.111 1.00 37.15 C \ ATOM 3112 O ASP D 65 6.484 -1.604 10.050 1.00 36.44 O \ ATOM 3113 CB ASP D 65 6.758 0.284 12.039 1.00 36.00 C \ ATOM 3114 CG ASP D 65 5.309 0.530 11.641 1.00 34.19 C \ ATOM 3115 OD1 ASP D 65 4.386 -0.152 12.162 1.00 31.42 O \ ATOM 3116 OD2 ASP D 65 5.103 1.435 10.803 1.00 31.06 O \ ATOM 3117 N ALA D 66 7.295 -3.331 11.255 1.00 37.83 N \ ATOM 3118 CA ALA D 66 7.215 -4.301 10.165 1.00 38.96 C \ ATOM 3119 C ALA D 66 6.060 -5.278 10.375 1.00 39.90 C \ ATOM 3120 O ALA D 66 5.781 -6.109 9.518 1.00 39.30 O \ ATOM 3121 CB ALA D 66 8.522 -5.089 10.040 1.00 39.08 C \ ATOM 3122 N GLY D 67 5.396 -5.164 11.525 1.00 41.55 N \ ATOM 3123 CA GLY D 67 4.153 -5.877 11.809 1.00 44.16 C \ ATOM 3124 C GLY D 67 4.270 -7.379 11.981 1.00 45.96 C \ ATOM 3125 O GLY D 67 3.447 -8.132 11.437 1.00 46.36 O \ ATOM 3126 N ASN D 68 5.292 -7.813 12.726 1.00 47.35 N \ ATOM 3127 CA ASN D 68 5.482 -9.230 13.070 1.00 48.94 C \ ATOM 3128 C ASN D 68 5.842 -9.447 14.546 1.00 49.79 C \ ATOM 3129 O ASN D 68 6.023 -10.584 14.999 1.00 50.04 O \ ATOM 3130 CB ASN D 68 6.532 -9.871 12.150 1.00 49.35 C \ ATOM 3131 CG ASN D 68 6.134 -9.816 10.688 1.00 49.80 C \ ATOM 3132 OD1 ASN D 68 6.852 -9.258 9.856 1.00 51.04 O \ ATOM 3133 ND2 ASN D 68 4.979 -10.391 10.370 1.00 49.59 N \ ATOM 3134 N ASP D 69 5.930 -8.342 15.288 1.00 50.67 N \ ATOM 3135 CA ASP D 69 6.279 -8.364 16.703 1.00 51.13 C \ ATOM 3136 C ASP D 69 5.031 -8.138 17.559 1.00 51.30 C \ ATOM 3137 O ASP D 69 5.088 -7.500 18.611 1.00 51.50 O \ ATOM 3138 CB ASP D 69 7.379 -7.323 17.017 1.00 51.41 C \ ATOM 3139 CG ASP D 69 6.984 -5.885 16.636 1.00 51.56 C \ ATOM 3140 OD1 ASP D 69 5.777 -5.570 16.535 1.00 52.83 O \ ATOM 3141 OD2 ASP D 69 7.897 -5.055 16.449 1.00 51.56 O \ TER 3142 ASP D 69 \ HETATM 3210 ZN ZN D 70 15.602 1.505 15.978 1.00 40.21 ZN \ HETATM 3495 O HOH D 14 8.877 -4.678 13.188 1.00 39.60 O \ HETATM 3496 O HOH D 71 16.402 12.757 5.129 1.00 38.10 O \ HETATM 3497 O HOH D 72 18.404 19.206 23.692 1.00 38.52 O \ HETATM 3498 O HOH D 73 6.715 2.396 5.257 1.00 33.59 O \ HETATM 3499 O HOH D 85 11.823 0.625 5.410 1.00 37.43 O \ HETATM 3500 O HOH D 119 5.198 -13.364 13.878 1.00 60.13 O \ HETATM 3501 O HOH D 150 17.158 14.922 6.368 1.00 46.34 O \ HETATM 3502 O HOH D 188 19.611 15.961 6.195 1.00 57.32 O \ HETATM 3503 O HOH D 191 36.283 3.535 27.470 1.00 71.08 O \ HETATM 3504 O HOH D 197 21.963 2.170 19.306 1.00 59.16 O \ HETATM 3505 O HOH D 201 13.237 13.923 3.103 1.00 59.99 O \ HETATM 3506 O HOH D 210 23.746 5.895 21.252 1.00 51.17 O \ HETATM 3507 O HOH D 214 22.284 14.858 12.274 1.00 55.91 O \ HETATM 3508 O HOH D 222 5.446 -3.836 14.460 1.00 43.16 O \ HETATM 3509 O HOH D 238 23.360 11.024 5.093 1.00 53.84 O \ HETATM 3510 O HOH D 253 20.777 6.033 25.209 1.00 56.43 O \ HETATM 3511 O HOH D 259 10.639 9.730 5.112 1.00 50.97 O \ HETATM 3512 O HOH D 265 17.145 16.857 2.694 1.00 56.45 O \ HETATM 3513 O HOH D 267 24.316 12.905 11.256 1.00 63.73 O \ HETATM 3514 O HOH D 269 18.842 5.657 -0.699 1.00 52.78 O \ HETATM 3515 O HOH D 274 12.060 9.552 -2.764 1.00 53.29 O \ HETATM 3516 O HOH D 278 21.231 12.763 13.454 1.00 50.67 O \ HETATM 3517 O HOH D 281 23.805 14.995 16.210 1.00 62.15 O \ HETATM 3518 O HOH D 285 11.716 -5.606 7.772 1.00 37.30 O \ HETATM 3519 O HOH D 288 19.502 16.735 23.991 1.00 42.69 O \ HETATM 3520 O HOH D 304 26.138 18.301 19.725 1.00 66.19 O \ HETATM 3521 O HOH D 309 22.566 19.564 13.697 1.00 57.48 O \ HETATM 3522 O HOH D 317 20.272 -1.345 13.435 1.00 72.76 O \ CONECT 141 3175 \ CONECT 292 3175 \ CONECT 1378 3176 \ CONECT 1400 3176 \ CONECT 1501 3176 \ CONECT 1544 3176 \ CONECT 1711 3209 \ CONECT 1862 3209 \ CONECT 2942 3210 \ CONECT 2964 3210 \ CONECT 3065 3210 \ CONECT 3108 3210 \ CONECT 3143 3144 3145 3146 3147 \ CONECT 3144 3143 \ CONECT 3145 3143 3175 \ CONECT 3146 3143 \ CONECT 3147 3143 3148 \ CONECT 3148 3147 3149 3150 3151 \ CONECT 3149 3148 \ CONECT 3150 3148 3175 \ CONECT 3151 3148 3152 \ CONECT 3152 3151 3153 3154 3155 \ CONECT 3153 3152 \ CONECT 3154 3152 \ CONECT 3155 3152 3156 \ CONECT 3156 3155 3157 \ CONECT 3157 3156 3158 3159 \ CONECT 3158 3157 3163 \ CONECT 3159 3157 3160 3161 \ CONECT 3160 3159 \ CONECT 3161 3159 3162 3163 \ CONECT 3162 3161 \ CONECT 3163 3158 3161 3164 \ CONECT 3164 3163 3165 3174 \ CONECT 3165 3164 3166 \ CONECT 3166 3165 3167 \ CONECT 3167 3166 3168 3174 \ CONECT 3168 3167 3169 3170 \ CONECT 3169 3168 \ CONECT 3170 3168 3171 \ CONECT 3171 3170 3172 3173 \ CONECT 3172 3171 \ CONECT 3173 3171 3174 \ CONECT 3174 3164 3167 3173 \ CONECT 3175 141 292 3145 3150 \ CONECT 3175 3334 3338 \ CONECT 3176 1378 1400 1501 1544 \ CONECT 3177 3178 3179 3180 3181 \ CONECT 3178 3177 \ CONECT 3179 3177 3209 \ CONECT 3180 3177 \ CONECT 3181 3177 3182 \ CONECT 3182 3181 3183 3184 3185 \ CONECT 3183 3182 \ CONECT 3184 3182 3209 \ CONECT 3185 3182 3186 \ CONECT 3186 3185 3187 3188 3189 \ CONECT 3187 3186 \ CONECT 3188 3186 \ CONECT 3189 3186 3190 \ CONECT 3190 3189 3191 \ CONECT 3191 3190 3192 3193 \ CONECT 3192 3191 3197 \ CONECT 3193 3191 3194 3195 \ CONECT 3194 3193 \ CONECT 3195 3193 3196 3197 \ CONECT 3196 3195 \ CONECT 3197 3192 3195 3198 \ CONECT 3198 3197 3199 3208 \ CONECT 3199 3198 3200 \ CONECT 3200 3199 3201 \ CONECT 3201 3200 3202 3208 \ CONECT 3202 3201 3203 3204 \ CONECT 3203 3202 \ CONECT 3204 3202 3205 \ CONECT 3205 3204 3206 3207 \ CONECT 3206 3205 \ CONECT 3207 3205 3208 \ CONECT 3208 3198 3201 3207 \ CONECT 3209 1711 1862 3179 3184 \ CONECT 3209 3468 3470 \ CONECT 3210 2942 2964 3065 3108 \ CONECT 3334 3175 \ CONECT 3338 3175 \ CONECT 3468 3209 \ CONECT 3470 3209 \ MASTER 354 0 6 16 16 0 20 6 3518 4 86 32 \ END \ """, "3mjhchainD") cmd.hide("all") cmd.color('grey70', "3mjhchainD") cmd.show('cartoon', "3mjhchainD") cmd.center("3mjhchainD", state=0, origin=1) cmd.zoom("3mjhchainD", animate=-1) cmd.select("e3mjhD1", "c. D & i. 37-69") cmd.color("red", "e3mjhD1") cmd.disable("e3mjhD1")