cmd.read_pdbstr("""\ HEADER VIRAL PROTEIN/INHIBITOR 17-JUL-15 5CMZ \ TITLE ARTIFICIAL HIV FUSION INHIBITOR AP3 FUSED TO THE C-TERMINUS OF GP41 \ TITLE 2 NHR \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; \ COMPND 3 CHAIN: A, C; \ COMPND 4 FRAGMENT: UNP RESIDUES 35-79; \ COMPND 5 SYNONYM: GO41; \ COMPND 6 ENGINEERED: YES; \ COMPND 7 MOL_ID: 2; \ COMPND 8 MOLECULE: ARTIFICIAL HIV ENTRY INHIBITOR AP3; \ COMPND 9 CHAIN: B, D; \ COMPND 10 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; \ SOURCE 3 ORGANISM_COMMON: HIV1; \ SOURCE 4 ORGANISM_TAXID: 11676; \ SOURCE 5 GENE: ENV; \ SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 8 MOL_ID: 2; \ SOURCE 9 SYNTHETIC: YES; \ SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; \ SOURCE 11 ORGANISM_TAXID: 32630 \ KEYWDS ENFUVIRTIDE, HIV FUSION INHIBITOR, AP3, GP41, 6-HB, VIRAL PROTEIN- \ KEYWDS 2 INHIBITOR COMPLEX \ EXPDTA X-RAY DIFFRACTION \ AUTHOR Y.ZHU,S.YE,R.ZHANG \ REVDAT 2 30-OCT-24 5CMZ 1 REMARK \ REVDAT 1 16-SEP-15 5CMZ 0 \ JRNL AUTH X.ZHU,Y.ZHU,S.YE,Q.WANG,W.XU,S.SU,Z.SUN,F.YU,Q.LIU,C.WANG, \ JRNL AUTH 2 T.ZHANG,Z.ZHANG,X.ZHANG,J.XU,L.DU,K.LIU,L.LU,R.ZHANG,S.JIANG \ JRNL TITL IMPROVED PHARMACOLOGICAL AND STRUCTURAL PROPERTIES OF HIV \ JRNL TITL 2 FUSION INHIBITOR AP3 OVER ENFUVIRTIDE: HIGHLIGHTING \ JRNL TITL 3 ADVANTAGES OF ARTIFICIAL PEPTIDE STRATEGY. \ JRNL REF SCI REP V. 5 13028 2015 \ JRNL REFN ESSN 2045-2322 \ JRNL PMID 26286358 \ JRNL DOI 10.1038/SREP13028 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.57 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : PHENIX 1.8.1_1168 \ REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN \ REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, \ REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, \ REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, \ REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, \ REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, \ REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT \ REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : ML \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.57 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.98 \ REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 \ REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 \ REMARK 3 NUMBER OF REFLECTIONS : 7574 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 \ REMARK 3 R VALUE (WORKING SET) : 0.245 \ REMARK 3 FREE R VALUE : 0.264 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.490 \ REMARK 3 FREE R VALUE TEST SET COUNT : 340 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). \ REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE \ REMARK 3 1 10.0000 - 3.2430 0.99 3841 174 0.2382 0.2520 \ REMARK 3 2 3.2430 - 2.5743 0.89 3393 166 0.2606 0.2908 \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL \ REMARK 3 SOLVENT RADIUS : 1.11 \ REMARK 3 SHRINKAGE RADIUS : 0.90 \ REMARK 3 K_SOL : NULL \ REMARK 3 B_SOL : NULL \ REMARK 3 \ REMARK 3 ERROR ESTIMATES. \ REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 \ REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.980 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : NULL \ REMARK 3 B22 (A**2) : NULL \ REMARK 3 B33 (A**2) : NULL \ REMARK 3 B12 (A**2) : NULL \ REMARK 3 B13 (A**2) : NULL \ REMARK 3 B23 (A**2) : NULL \ REMARK 3 \ REMARK 3 TWINNING INFORMATION. \ REMARK 3 FRACTION: NULL \ REMARK 3 OPERATOR: NULL \ REMARK 3 \ REMARK 3 DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 RMSD COUNT \ REMARK 3 BOND : 0.004 1367 \ REMARK 3 ANGLE : 0.471 1820 \ REMARK 3 CHIRALITY : 0.034 203 \ REMARK 3 PLANARITY : 0.001 226 \ REMARK 3 DIHEDRAL : 16.319 547 \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 NCS DETAILS \ REMARK 3 NUMBER OF NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 5CMZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUL-15. \ REMARK 100 THE DEPOSITION ID IS D_1000211900. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 26-SEP-14 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 6.5 \ REMARK 200 NUMBER OF CRYSTALS USED : NULL \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : SSRF \ REMARK 200 BEAMLINE : BL17U \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : PIXEL \ REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 \ REMARK 200 DATA SCALING SOFTWARE : HKL-2000 \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61523 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.570 \ REMARK 200 RESOLUTION RANGE LOW (A) : 38.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 \ REMARK 200 DATA REDUNDANCY : 7.700 \ REMARK 200 R MERGE (I) : NULL \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 27.2000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL \ REMARK 200 COMPLETENESS FOR SHELL (%) : NULL \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL \ REMARK 200 SOFTWARE USED: PHASER \ REMARK 200 STARTING MODEL: NULL \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 63.06 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M BIS-TRIS \ REMARK 280 PH 6.5, 25% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, \ REMARK 280 TEMPERATURE 289K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -Y,X-Y,Z \ REMARK 290 3555 -X+Y,-X,Z \ REMARK 290 4555 -X,-Y,Z+1/2 \ REMARK 290 5555 Y,-X+Y,Z+1/2 \ REMARK 290 6555 X-Y,X,Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 113.94850 \ REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 113.94850 \ REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 113.94850 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 12980 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 12740 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -22.20150 \ REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 38.45413 \ REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -44.40300 \ REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 \ REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 12690 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 14670 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -44.40300 \ REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 \ REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -22.20150 \ REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -38.45413 \ REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 375 \ REMARK 375 SPECIAL POSITION \ REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS \ REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL \ REMARK 375 POSITIONS. \ REMARK 375 \ REMARK 375 ATOM RES CSSEQI \ REMARK 375 HOH A 305 LIES ON A SPECIAL POSITION. \ REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 SER A 1 \ REMARK 465 GLY A 2 \ REMARK 465 GLU B 73 \ REMARK 465 SER B 74 \ REMARK 465 ILE B 75 \ REMARK 465 LYS B 76 \ REMARK 465 LYS B 77 \ REMARK 465 ILE D 75 \ REMARK 465 LYS D 76 \ REMARK 465 LYS D 77 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 CH3 ACE D 40 N MET D 41 1.65 \ REMARK 500 O HOH A 313 O HOH C 212 1.85 \ REMARK 500 O HOH C 202 O HOH C 214 2.11 \ REMARK 500 OD1 ASP C 44 O HOH C 201 2.12 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC \ REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 \ REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A \ REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 \ REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE \ REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. \ REMARK 500 \ REMARK 500 DISTANCE CUTOFF: \ REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS \ REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE \ REMARK 500 O HOH A 302 O HOH B 101 2565 2.17 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 ACE B 40 O - C - N ANGL. DEV. = -16.9 DEGREES \ REMARK 500 ACE D 40 O - C - N ANGL. DEV. = -26.2 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 GLN B 71 -68.95 -120.40 \ REMARK 500 GLN D 71 44.98 -73.03 \ REMARK 500 GLU D 73 35.90 -73.98 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC2 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC3 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLN C 45 and NH2 C \ REMARK 800 100 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC4 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ACE D 40 and MET D \ REMARK 800 41 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 5CMU RELATED DB: PDB \ REMARK 900 RELATED ID: 5CN0 RELATED DB: PDB \ DBREF 5CMZ A 1 45 UNP Q1HMR5 Q1HMR5_9HIV1 35 79 \ DBREF 5CMZ B 40 77 PDB 5CMZ 5CMZ 40 77 \ DBREF 5CMZ C 1 45 UNP Q1HMR5 Q1HMR5_9HIV1 35 79 \ DBREF 5CMZ D 40 77 PDB 5CMZ 5CMZ 40 77 \ SEQADV 5CMZ NH2 A 100 UNP Q1HMR5 AMIDATION \ SEQADV 5CMZ NH2 C 100 UNP Q1HMR5 AMIDATION \ SEQRES 1 A 46 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA \ SEQRES 2 A 46 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP \ SEQRES 3 A 46 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU ALA VAL GLU \ SEQRES 4 A 46 ARG TYR LEU LYS ASP GLN NH2 \ SEQRES 1 B 38 ACE MET THR TRP GLU GLU TRP ASP LYS LYS ILE GLU GLU \ SEQRES 2 B 38 LEU ILE LYS LYS SER GLU GLU LEU ILE LYS LYS ILE GLU \ SEQRES 3 B 38 GLU GLN ILE LYS LYS GLN GLU GLU SER ILE LYS LYS \ SEQRES 1 C 46 SER GLY ILE VAL GLN GLN GLN ASN ASN LEU LEU ARG ALA \ SEQRES 2 C 46 ILE GLU ALA GLN GLN HIS LEU LEU GLN LEU THR VAL TRP \ SEQRES 3 C 46 GLY ILE LYS GLN LEU GLN ALA ARG ILE LEU ALA VAL GLU \ SEQRES 4 C 46 ARG TYR LEU LYS ASP GLN NH2 \ SEQRES 1 D 38 ACE MET THR TRP GLU GLU TRP ASP LYS LYS ILE GLU GLU \ SEQRES 2 D 38 LEU ILE LYS LYS SER GLU GLU LEU ILE LYS LYS ILE GLU \ SEQRES 3 D 38 GLU GLN ILE LYS LYS GLN GLU GLU SER ILE LYS LYS \ HET NH2 A 100 1 \ HET ACE B 40 3 \ HET NH2 C 100 1 \ HET ACE D 40 3 \ HET SO4 A 201 5 \ HET EDO A 202 4 \ HET P4G A 203 11 \ HETNAM NH2 AMINO GROUP \ HETNAM ACE ACETYL GROUP \ HETNAM SO4 SULFATE ION \ HETNAM EDO 1,2-ETHANEDIOL \ HETNAM P4G 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE \ HETSYN EDO ETHYLENE GLYCOL \ FORMUL 1 NH2 2(H2 N) \ FORMUL 2 ACE 2(C2 H4 O) \ FORMUL 5 SO4 O4 S 2- \ FORMUL 6 EDO C2 H6 O2 \ FORMUL 7 P4G C8 H18 O3 \ FORMUL 8 HOH *37(H2 O) \ HELIX 1 AA1 ILE A 3 GLN A 45 1 43 \ HELIX 2 AA2 THR B 42 LYS B 70 1 29 \ HELIX 3 AA3 ILE C 3 GLN C 45 1 43 \ HELIX 4 AA4 THR D 42 GLN D 71 1 30 \ LINK C GLN A 45 N NH2 A 100 1555 1555 1.21 \ LINK C ACE B 40 N MET B 41 1555 1555 1.33 \ LINK C GLN C 45 N NH2 C 100 1555 1555 1.33 \ LINK C ACE D 40 N MET D 41 1555 1555 1.30 \ SITE 1 AC1 6 ARG A 40 LYS A 43 HOH A 301 HOH A 304 \ SITE 2 AC1 6 ARG C 40 LYS C 43 \ SITE 1 AC2 3 ALA A 37 ASP A 44 HOH A 310 \ SITE 1 AC3 4 TYR C 41 LEU C 42 LYS C 43 ASP C 44 \ SITE 1 AC4 5 TRP C 26 THR D 42 GLU D 45 TRP D 46 \ SITE 2 AC4 5 LYS D 49 \ CRYST1 44.403 44.403 227.897 90.00 90.00 120.00 P 63 12 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.022521 0.013003 0.000000 0.00000 \ SCALE2 0.000000 0.026005 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.004388 0.00000 \ TER 366 NH2 A 100 \ TER 654 GLU B 72 \ TER 1034 NH2 C 100 \ HETATM 1035 C ACE D 40 -38.871 -6.158 14.447 1.00 85.88 C \ HETATM 1036 O ACE D 40 -39.023 -5.212 13.693 1.00 91.83 O \ HETATM 1037 CH3 ACE D 40 -38.709 -7.554 13.896 1.00 89.31 C \ ATOM 1038 N MET D 41 -37.612 -6.358 14.179 1.00 88.34 N \ ATOM 1039 CA MET D 41 -36.630 -5.526 14.864 1.00 76.09 C \ ATOM 1040 C MET D 41 -35.613 -4.968 13.870 1.00 67.50 C \ ATOM 1041 O MET D 41 -35.230 -5.643 12.915 1.00 68.15 O \ ATOM 1042 CB MET D 41 -35.924 -6.331 15.956 1.00 71.03 C \ ATOM 1043 CG MET D 41 -35.044 -5.506 16.878 1.00 77.08 C \ ATOM 1044 SD MET D 41 -34.203 -6.523 18.106 1.00 72.85 S \ ATOM 1045 CE MET D 41 -33.337 -5.266 19.040 1.00 60.30 C \ ATOM 1046 N THR D 42 -35.184 -3.730 14.099 1.00 72.08 N \ ATOM 1047 CA THR D 42 -34.251 -3.052 13.204 1.00 66.90 C \ ATOM 1048 C THR D 42 -32.837 -3.051 13.788 1.00 69.68 C \ ATOM 1049 O THR D 42 -32.663 -3.010 15.006 1.00 68.58 O \ ATOM 1050 CB THR D 42 -34.708 -1.601 12.937 1.00 70.43 C \ ATOM 1051 OG1 THR D 42 -36.058 -1.605 12.457 1.00 87.70 O \ ATOM 1052 CG2 THR D 42 -33.815 -0.919 11.909 1.00 74.93 C \ ATOM 1053 N TRP D 43 -31.832 -3.102 12.917 1.00 63.79 N \ ATOM 1054 CA TRP D 43 -30.438 -3.048 13.345 1.00 57.13 C \ ATOM 1055 C TRP D 43 -30.082 -1.714 13.996 1.00 61.55 C \ ATOM 1056 O TRP D 43 -29.071 -1.607 14.687 1.00 70.75 O \ ATOM 1057 CB TRP D 43 -29.498 -3.331 12.169 1.00 54.65 C \ ATOM 1058 CG TRP D 43 -29.300 -4.793 11.913 1.00 52.20 C \ ATOM 1059 CD1 TRP D 43 -29.925 -5.554 10.971 1.00 47.91 C \ ATOM 1060 CD2 TRP D 43 -28.418 -5.674 12.621 1.00 54.18 C \ ATOM 1061 NE1 TRP D 43 -29.486 -6.854 11.046 1.00 57.99 N \ ATOM 1062 CE2 TRP D 43 -28.560 -6.953 12.052 1.00 52.86 C \ ATOM 1063 CE3 TRP D 43 -27.522 -5.504 13.680 1.00 52.16 C \ ATOM 1064 CZ2 TRP D 43 -27.838 -8.058 12.507 1.00 44.63 C \ ATOM 1065 CZ3 TRP D 43 -26.808 -6.599 14.130 1.00 48.83 C \ ATOM 1066 CH2 TRP D 43 -26.969 -7.860 13.545 1.00 49.18 C \ ATOM 1067 N GLU D 44 -30.909 -0.698 13.771 1.00 70.74 N \ ATOM 1068 CA GLU D 44 -30.720 0.588 14.432 1.00 75.62 C \ ATOM 1069 C GLU D 44 -31.320 0.535 15.833 1.00 70.01 C \ ATOM 1070 O GLU D 44 -30.821 1.175 16.760 1.00 67.32 O \ ATOM 1071 CB GLU D 44 -31.355 1.719 13.620 1.00 74.15 C \ ATOM 1072 CG GLU D 44 -30.485 2.964 13.515 1.00 85.29 C \ ATOM 1073 CD GLU D 44 -31.194 4.121 12.837 1.00110.79 C \ ATOM 1074 OE1 GLU D 44 -32.394 4.329 13.116 1.00109.80 O \ ATOM 1075 OE2 GLU D 44 -30.553 4.820 12.024 1.00103.42 O \ ATOM 1076 N GLU D 45 -32.395 -0.234 15.978 1.00 62.79 N \ ATOM 1077 CA GLU D 45 -33.000 -0.474 17.282 1.00 70.36 C \ ATOM 1078 C GLU D 45 -32.105 -1.409 18.086 1.00 68.03 C \ ATOM 1079 O GLU D 45 -32.054 -1.338 19.313 1.00 72.59 O \ ATOM 1080 CB GLU D 45 -34.389 -1.097 17.123 1.00 76.48 C \ ATOM 1081 CG GLU D 45 -35.363 -0.267 16.300 1.00 82.36 C \ ATOM 1082 CD GLU D 45 -36.638 -1.021 15.974 1.00 88.13 C \ ATOM 1083 OE1 GLU D 45 -36.700 -2.238 16.251 1.00 87.72 O \ ATOM 1084 OE2 GLU D 45 -37.578 -0.398 15.438 1.00 95.59 O \ ATOM 1085 N TRP D 46 -31.404 -2.287 17.377 1.00 68.44 N \ ATOM 1086 CA TRP D 46 -30.490 -3.234 17.999 1.00 58.57 C \ ATOM 1087 C TRP D 46 -29.296 -2.504 18.602 1.00 62.48 C \ ATOM 1088 O TRP D 46 -28.854 -2.829 19.704 1.00 59.94 O \ ATOM 1089 CB TRP D 46 -30.023 -4.265 16.968 1.00 55.56 C \ ATOM 1090 CG TRP D 46 -29.188 -5.374 17.540 1.00 52.53 C \ ATOM 1091 CD1 TRP D 46 -29.637 -6.519 18.133 1.00 51.33 C \ ATOM 1092 CD2 TRP D 46 -27.756 -5.446 17.559 1.00 44.93 C \ ATOM 1093 NE1 TRP D 46 -28.573 -7.294 18.524 1.00 47.43 N \ ATOM 1094 CE2 TRP D 46 -27.409 -6.660 18.183 1.00 46.11 C \ ATOM 1095 CE3 TRP D 46 -26.737 -4.603 17.111 1.00 48.90 C \ ATOM 1096 CZ2 TRP D 46 -26.079 -7.047 18.370 1.00 44.31 C \ ATOM 1097 CZ3 TRP D 46 -25.422 -4.988 17.298 1.00 45.47 C \ ATOM 1098 CH2 TRP D 46 -25.104 -6.199 17.921 1.00 48.42 C \ ATOM 1099 N ASP D 47 -28.784 -1.513 17.877 1.00 57.55 N \ ATOM 1100 CA ASP D 47 -27.654 -0.718 18.344 1.00 61.61 C \ ATOM 1101 C ASP D 47 -27.978 0.034 19.632 1.00 65.76 C \ ATOM 1102 O ASP D 47 -27.137 0.144 20.522 1.00 61.26 O \ ATOM 1103 CB ASP D 47 -27.209 0.273 17.264 1.00 68.82 C \ ATOM 1104 CG ASP D 47 -26.575 -0.409 16.067 1.00 76.57 C \ ATOM 1105 OD1 ASP D 47 -26.040 -1.525 16.230 1.00 77.98 O \ ATOM 1106 OD2 ASP D 47 -26.606 0.176 14.964 1.00 76.43 O \ ATOM 1107 N LYS D 48 -29.200 0.547 19.727 1.00 70.13 N \ ATOM 1108 CA LYS D 48 -29.611 1.324 20.890 1.00 69.14 C \ ATOM 1109 C LYS D 48 -29.703 0.465 22.147 1.00 67.42 C \ ATOM 1110 O LYS D 48 -29.189 0.843 23.198 1.00 67.17 O \ ATOM 1111 CB LYS D 48 -30.942 2.031 20.625 1.00 67.10 C \ ATOM 1112 CG LYS D 48 -30.869 3.079 19.524 1.00 81.74 C \ ATOM 1113 CD LYS D 48 -32.221 3.732 19.280 1.00 90.76 C \ ATOM 1114 CE LYS D 48 -32.136 4.780 18.179 1.00 96.22 C \ ATOM 1115 NZ LYS D 48 -33.458 5.407 17.893 1.00108.14 N \ ATOM 1116 N LYS D 49 -30.348 -0.693 22.034 1.00 60.12 N \ ATOM 1117 CA LYS D 49 -30.508 -1.594 23.172 1.00 62.98 C \ ATOM 1118 C LYS D 49 -29.163 -2.091 23.699 1.00 63.14 C \ ATOM 1119 O LYS D 49 -28.961 -2.180 24.908 1.00 62.32 O \ ATOM 1120 CB LYS D 49 -31.399 -2.782 22.803 1.00 66.41 C \ ATOM 1121 CG LYS D 49 -32.815 -2.406 22.394 1.00 71.47 C \ ATOM 1122 CD LYS D 49 -33.683 -3.647 22.237 1.00 69.76 C \ ATOM 1123 CE LYS D 49 -35.079 -3.300 21.744 1.00 74.13 C \ ATOM 1124 NZ LYS D 49 -35.928 -4.515 21.595 1.00 79.62 N \ ATOM 1125 N ILE D 50 -28.250 -2.410 22.785 1.00 60.66 N \ ATOM 1126 CA ILE D 50 -26.919 -2.882 23.156 1.00 56.56 C \ ATOM 1127 C ILE D 50 -26.157 -1.834 23.966 1.00 62.93 C \ ATOM 1128 O ILE D 50 -25.658 -2.124 25.053 1.00 72.67 O \ ATOM 1129 CB ILE D 50 -26.088 -3.278 21.917 1.00 59.73 C \ ATOM 1130 CG1 ILE D 50 -26.668 -4.531 21.260 1.00 52.57 C \ ATOM 1131 CG2 ILE D 50 -24.638 -3.520 22.301 1.00 49.65 C \ ATOM 1132 CD1 ILE D 50 -26.551 -5.777 22.114 1.00 56.49 C \ ATOM 1133 N GLU D 51 -26.078 -0.617 23.437 1.00 65.01 N \ ATOM 1134 CA GLU D 51 -25.355 0.460 24.108 1.00 70.75 C \ ATOM 1135 C GLU D 51 -25.963 0.849 25.453 1.00 68.18 C \ ATOM 1136 O GLU D 51 -25.239 1.182 26.388 1.00 69.53 O \ ATOM 1137 CB GLU D 51 -25.229 1.685 23.199 1.00 66.75 C \ ATOM 1138 CG GLU D 51 -23.971 1.675 22.350 1.00 79.68 C \ ATOM 1139 CD GLU D 51 -22.710 1.593 23.189 1.00 92.24 C \ ATOM 1140 OE1 GLU D 51 -21.812 0.797 22.842 1.00 87.09 O \ ATOM 1141 OE2 GLU D 51 -22.617 2.326 24.196 1.00 94.64 O \ ATOM 1142 N GLU D 52 -27.288 0.802 25.548 1.00 63.47 N \ ATOM 1143 CA GLU D 52 -27.970 1.083 26.806 1.00 67.29 C \ ATOM 1144 C GLU D 52 -27.620 0.033 27.856 1.00 68.93 C \ ATOM 1145 O GLU D 52 -27.340 0.363 29.008 1.00 69.08 O \ ATOM 1146 CB GLU D 52 -29.486 1.131 26.598 1.00 70.29 C \ ATOM 1147 CG GLU D 52 -29.978 2.351 25.833 1.00 78.23 C \ ATOM 1148 CD GLU D 52 -31.441 2.243 25.442 1.00 89.43 C \ ATOM 1149 OE1 GLU D 52 -31.908 3.085 24.646 1.00 83.62 O \ ATOM 1150 OE2 GLU D 52 -32.124 1.317 25.928 1.00 92.61 O \ ATOM 1151 N LEU D 53 -27.632 -1.231 27.446 1.00 68.95 N \ ATOM 1152 CA LEU D 53 -27.349 -2.339 28.352 1.00 64.46 C \ ATOM 1153 C LEU D 53 -25.887 -2.378 28.792 1.00 63.29 C \ ATOM 1154 O LEU D 53 -25.581 -2.809 29.903 1.00 65.09 O \ ATOM 1155 CB LEU D 53 -27.742 -3.670 27.709 1.00 59.94 C \ ATOM 1156 CG LEU D 53 -29.237 -3.963 27.594 1.00 60.77 C \ ATOM 1157 CD1 LEU D 53 -29.465 -5.199 26.745 1.00 55.36 C \ ATOM 1158 CD2 LEU D 53 -29.851 -4.141 28.971 1.00 55.48 C \ ATOM 1159 N ILE D 54 -24.987 -1.929 27.922 1.00 63.33 N \ ATOM 1160 CA ILE D 54 -23.566 -1.897 28.256 1.00 66.32 C \ ATOM 1161 C ILE D 54 -23.261 -0.783 29.259 1.00 67.01 C \ ATOM 1162 O ILE D 54 -22.488 -0.981 30.196 1.00 69.96 O \ ATOM 1163 CB ILE D 54 -22.680 -1.757 26.997 1.00 69.64 C \ ATOM 1164 CG1 ILE D 54 -22.809 -3.003 26.120 1.00 65.86 C \ ATOM 1165 CG2 ILE D 54 -21.224 -1.547 27.379 1.00 65.78 C \ ATOM 1166 CD1 ILE D 54 -21.939 -2.975 24.881 1.00 61.97 C \ ATOM 1167 N LYS D 55 -23.880 0.379 29.064 1.00 67.16 N \ ATOM 1168 CA LYS D 55 -23.747 1.490 30.003 1.00 72.70 C \ ATOM 1169 C LYS D 55 -24.233 1.087 31.389 1.00 70.56 C \ ATOM 1170 O LYS D 55 -23.550 1.312 32.386 1.00 70.51 O \ ATOM 1171 CB LYS D 55 -24.537 2.706 29.514 1.00 66.42 C \ ATOM 1172 CG LYS D 55 -23.968 3.365 28.269 1.00 79.55 C \ ATOM 1173 CD LYS D 55 -24.959 4.355 27.674 1.00 84.70 C \ ATOM 1174 CE LYS D 55 -24.486 4.866 26.323 1.00 85.69 C \ ATOM 1175 NZ LYS D 55 -25.544 5.642 25.618 1.00 84.68 N \ ATOM 1176 N LYS D 56 -25.421 0.493 31.436 1.00 63.86 N \ ATOM 1177 CA LYS D 56 -26.007 0.009 32.682 1.00 66.84 C \ ATOM 1178 C LYS D 56 -25.113 -1.030 33.351 1.00 70.88 C \ ATOM 1179 O LYS D 56 -24.913 -0.998 34.565 1.00 75.24 O \ ATOM 1180 CB LYS D 56 -27.391 -0.584 32.411 1.00 68.51 C \ ATOM 1181 CG LYS D 56 -27.947 -1.440 33.538 1.00 67.44 C \ ATOM 1182 CD LYS D 56 -29.210 -2.160 33.092 1.00 78.28 C \ ATOM 1183 CE LYS D 56 -29.651 -3.201 34.109 1.00 87.57 C \ ATOM 1184 NZ LYS D 56 -30.802 -4.009 33.612 1.00 93.88 N \ ATOM 1185 N SER D 57 -24.573 -1.944 32.551 1.00 66.48 N \ ATOM 1186 CA SER D 57 -23.698 -2.989 33.066 1.00 61.08 C \ ATOM 1187 C SER D 57 -22.411 -2.401 33.641 1.00 63.98 C \ ATOM 1188 O SER D 57 -21.919 -2.860 34.670 1.00 69.39 O \ ATOM 1189 CB SER D 57 -23.377 -4.007 31.969 1.00 66.78 C \ ATOM 1190 OG SER D 57 -22.675 -5.119 32.494 1.00 72.03 O \ ATOM 1191 N GLU D 58 -21.876 -1.381 32.975 1.00 69.00 N \ ATOM 1192 CA GLU D 58 -20.661 -0.714 33.437 1.00 69.58 C \ ATOM 1193 C GLU D 58 -20.882 0.022 34.756 1.00 71.28 C \ ATOM 1194 O GLU D 58 -20.008 0.034 35.621 1.00 73.02 O \ ATOM 1195 CB GLU D 58 -20.143 0.262 32.375 1.00 68.15 C \ ATOM 1196 CG GLU D 58 -19.487 -0.400 31.172 1.00 79.10 C \ ATOM 1197 CD GLU D 58 -19.103 0.599 30.095 1.00 91.33 C \ ATOM 1198 OE1 GLU D 58 -19.585 1.750 30.147 1.00 89.90 O \ ATOM 1199 OE2 GLU D 58 -18.317 0.232 29.196 1.00 86.70 O \ ATOM 1200 N GLU D 59 -22.053 0.636 34.903 1.00 73.44 N \ ATOM 1201 CA GLU D 59 -22.382 1.389 36.110 1.00 80.17 C \ ATOM 1202 C GLU D 59 -22.567 0.472 37.317 1.00 80.80 C \ ATOM 1203 O GLU D 59 -22.080 0.766 38.408 1.00 76.39 O \ ATOM 1204 CB GLU D 59 -23.640 2.235 35.888 1.00 79.59 C \ ATOM 1205 CG GLU D 59 -23.465 3.364 34.880 1.00 85.39 C \ ATOM 1206 CD GLU D 59 -24.767 4.079 34.570 1.00 96.35 C \ ATOM 1207 OE1 GLU D 59 -24.720 5.160 33.947 1.00104.88 O \ ATOM 1208 OE2 GLU D 59 -25.838 3.558 34.946 1.00 93.56 O \ ATOM 1209 N LEU D 60 -23.276 -0.635 37.113 1.00 77.83 N \ ATOM 1210 CA LEU D 60 -23.512 -1.610 38.174 1.00 71.27 C \ ATOM 1211 C LEU D 60 -22.203 -2.218 38.672 1.00 73.52 C \ ATOM 1212 O LEU D 60 -22.028 -2.440 39.869 1.00 77.11 O \ ATOM 1213 CB LEU D 60 -24.461 -2.709 37.692 1.00 62.39 C \ ATOM 1214 CG LEU D 60 -25.916 -2.301 37.458 1.00 67.54 C \ ATOM 1215 CD1 LEU D 60 -26.689 -3.427 36.796 1.00 66.73 C \ ATOM 1216 CD2 LEU D 60 -26.575 -1.902 38.768 1.00 70.15 C \ ATOM 1217 N ILE D 61 -21.285 -2.479 37.746 1.00 74.07 N \ ATOM 1218 CA ILE D 61 -19.967 -3.003 38.090 1.00 77.66 C \ ATOM 1219 C ILE D 61 -19.193 -2.001 38.947 1.00 78.82 C \ ATOM 1220 O ILE D 61 -18.484 -2.383 39.878 1.00 81.98 O \ ATOM 1221 CB ILE D 61 -19.158 -3.369 36.821 1.00 74.37 C \ ATOM 1222 CG1 ILE D 61 -19.757 -4.606 36.148 1.00 69.92 C \ ATOM 1223 CG2 ILE D 61 -17.699 -3.626 37.153 1.00 66.68 C \ ATOM 1224 CD1 ILE D 61 -19.075 -4.990 34.853 1.00 67.60 C \ ATOM 1225 N LYS D 62 -19.351 -0.717 38.642 1.00 83.05 N \ ATOM 1226 CA LYS D 62 -18.664 0.333 39.388 1.00 85.53 C \ ATOM 1227 C LYS D 62 -19.363 0.640 40.712 1.00 86.17 C \ ATOM 1228 O LYS D 62 -18.758 1.204 41.621 1.00 89.98 O \ ATOM 1229 CB LYS D 62 -18.520 1.595 38.535 1.00 81.12 C \ ATOM 1230 CG LYS D 62 -17.082 2.070 38.386 1.00 86.22 C \ ATOM 1231 CD LYS D 62 -16.848 2.723 37.032 1.00 92.69 C \ ATOM 1232 CE LYS D 62 -17.058 1.727 35.900 1.00 95.98 C \ ATOM 1233 NZ LYS D 62 -16.794 2.328 34.562 1.00 96.03 N \ ATOM 1234 N LYS D 63 -20.637 0.269 40.812 1.00 80.44 N \ ATOM 1235 CA LYS D 63 -21.360 0.333 42.077 1.00 76.39 C \ ATOM 1236 C LYS D 63 -20.743 -0.684 43.027 1.00 86.39 C \ ATOM 1237 O LYS D 63 -20.388 -0.367 44.162 1.00 85.77 O \ ATOM 1238 CB LYS D 63 -22.836 -0.007 41.861 1.00 79.07 C \ ATOM 1239 CG LYS D 63 -23.801 1.158 42.019 1.00 81.49 C \ ATOM 1240 CD LYS D 63 -25.232 0.714 41.733 1.00 86.04 C \ ATOM 1241 CE LYS D 63 -26.244 1.786 42.106 1.00 82.01 C \ ATOM 1242 NZ LYS D 63 -25.979 3.076 41.415 1.00 85.70 N \ ATOM 1243 N ILE D 64 -20.619 -1.911 42.532 1.00 86.01 N \ ATOM 1244 CA ILE D 64 -20.046 -3.023 43.278 1.00 81.89 C \ ATOM 1245 C ILE D 64 -18.602 -2.754 43.695 1.00 85.32 C \ ATOM 1246 O ILE D 64 -18.224 -2.996 44.842 1.00 87.75 O \ ATOM 1247 CB ILE D 64 -20.094 -4.310 42.433 1.00 75.96 C \ ATOM 1248 CG1 ILE D 64 -21.544 -4.671 42.100 1.00 73.88 C \ ATOM 1249 CG2 ILE D 64 -19.398 -5.454 43.148 1.00 72.01 C \ ATOM 1250 CD1 ILE D 64 -21.687 -5.566 40.889 1.00 73.36 C \ ATOM 1251 N GLU D 65 -17.805 -2.245 42.761 1.00 81.29 N \ ATOM 1252 CA GLU D 65 -16.382 -2.011 42.999 1.00 90.76 C \ ATOM 1253 C GLU D 65 -16.126 -0.992 44.109 1.00 98.01 C \ ATOM 1254 O GLU D 65 -15.064 -0.997 44.730 1.00100.33 O \ ATOM 1255 CB GLU D 65 -15.686 -1.578 41.704 1.00 92.31 C \ ATOM 1256 CG GLU D 65 -14.549 -2.494 41.273 1.00 94.44 C \ ATOM 1257 CD GLU D 65 -13.915 -2.069 39.962 1.00 97.87 C \ ATOM 1258 OE1 GLU D 65 -14.416 -1.110 39.339 1.00 94.14 O \ ATOM 1259 OE2 GLU D 65 -12.915 -2.696 39.554 1.00 99.02 O \ ATOM 1260 N GLU D 66 -17.100 -0.120 44.354 1.00 92.69 N \ ATOM 1261 CA GLU D 66 -16.989 0.869 45.421 1.00 96.64 C \ ATOM 1262 C GLU D 66 -17.317 0.251 46.777 1.00 98.89 C \ ATOM 1263 O GLU D 66 -16.569 0.418 47.740 1.00100.31 O \ ATOM 1264 CB GLU D 66 -17.914 2.058 45.152 1.00 94.79 C \ ATOM 1265 CG GLU D 66 -17.492 2.927 43.978 1.00101.09 C \ ATOM 1266 CD GLU D 66 -18.523 3.987 43.641 1.00108.82 C \ ATOM 1267 OE1 GLU D 66 -19.575 4.029 44.314 1.00112.25 O \ ATOM 1268 OE2 GLU D 66 -18.284 4.777 42.703 1.00109.47 O \ ATOM 1269 N GLN D 67 -18.439 -0.462 46.839 1.00 92.95 N \ ATOM 1270 CA GLN D 67 -18.902 -1.099 48.070 1.00 85.67 C \ ATOM 1271 C GLN D 67 -17.861 -2.054 48.654 1.00 93.13 C \ ATOM 1272 O GLN D 67 -17.685 -2.122 49.870 1.00 99.47 O \ ATOM 1273 CB GLN D 67 -20.219 -1.840 47.816 1.00 87.62 C \ ATOM 1274 CG GLN D 67 -21.382 -0.941 47.416 1.00 93.73 C \ ATOM 1275 CD GLN D 67 -22.525 -1.711 46.779 1.00104.54 C \ ATOM 1276 OE1 GLN D 67 -22.306 -2.660 46.029 1.00100.46 O \ ATOM 1277 NE2 GLN D 67 -23.754 -1.305 47.079 1.00107.79 N \ ATOM 1278 N ILE D 68 -17.175 -2.785 47.782 1.00 95.39 N \ ATOM 1279 CA ILE D 68 -16.120 -3.698 48.207 1.00 92.66 C \ ATOM 1280 C ILE D 68 -14.946 -2.918 48.798 1.00 99.07 C \ ATOM 1281 O ILE D 68 -14.346 -3.335 49.789 1.00106.15 O \ ATOM 1282 CB ILE D 68 -15.632 -4.582 47.039 1.00 88.75 C \ ATOM 1283 CG1 ILE D 68 -16.788 -5.413 46.481 1.00 88.25 C \ ATOM 1284 CG2 ILE D 68 -14.501 -5.494 47.485 1.00 88.74 C \ ATOM 1285 CD1 ILE D 68 -16.390 -6.317 45.335 1.00 90.30 C \ ATOM 1286 N LYS D 69 -14.630 -1.780 48.189 1.00101.33 N \ ATOM 1287 CA LYS D 69 -13.574 -0.911 48.695 1.00101.88 C \ ATOM 1288 C LYS D 69 -14.070 -0.077 49.870 1.00105.16 C \ ATOM 1289 O LYS D 69 -13.292 0.296 50.748 1.00103.48 O \ ATOM 1290 CB LYS D 69 -13.037 -0.002 47.587 1.00104.04 C \ ATOM 1291 CG LYS D 69 -12.318 -0.745 46.474 1.00117.65 C \ ATOM 1292 CD LYS D 69 -11.660 0.217 45.497 1.00134.27 C \ ATOM 1293 CE LYS D 69 -10.896 -0.534 44.417 1.00145.08 C \ ATOM 1294 NZ LYS D 69 -10.179 0.388 43.492 1.00153.14 N \ ATOM 1295 N LYS D 70 -15.369 0.211 49.883 1.00104.08 N \ ATOM 1296 CA LYS D 70 -15.983 0.924 50.998 1.00 97.81 C \ ATOM 1297 C LYS D 70 -15.989 0.030 52.233 1.00106.77 C \ ATOM 1298 O LYS D 70 -16.130 0.505 53.360 1.00108.94 O \ ATOM 1299 CB LYS D 70 -17.407 1.368 50.647 1.00 99.57 C \ ATOM 1300 CG LYS D 70 -18.066 2.252 51.697 1.00103.15 C \ ATOM 1301 CD LYS D 70 -19.473 2.658 51.290 1.00104.04 C \ ATOM 1302 CE LYS D 70 -20.176 3.412 52.409 1.00109.03 C \ ATOM 1303 NZ LYS D 70 -19.395 4.595 52.865 1.00115.89 N \ ATOM 1304 N GLN D 71 -15.809 -1.269 52.016 1.00106.49 N \ ATOM 1305 CA GLN D 71 -15.701 -2.225 53.111 1.00101.26 C \ ATOM 1306 C GLN D 71 -14.357 -2.095 53.826 1.00103.98 C \ ATOM 1307 O GLN D 71 -13.700 -3.095 54.113 1.00100.73 O \ ATOM 1308 CB GLN D 71 -15.880 -3.656 52.595 1.00101.36 C \ ATOM 1309 CG GLN D 71 -16.944 -4.461 53.325 1.00 97.82 C \ ATOM 1310 CD GLN D 71 -18.350 -3.983 53.022 1.00 93.74 C \ ATOM 1311 OE1 GLN D 71 -18.854 -3.056 53.655 1.00 97.69 O \ ATOM 1312 NE2 GLN D 71 -18.992 -4.616 52.048 1.00 98.45 N \ ATOM 1313 N GLU D 72 -13.952 -0.859 54.103 1.00110.07 N \ ATOM 1314 CA GLU D 72 -12.738 -0.596 54.861 1.00112.09 C \ ATOM 1315 C GLU D 72 -13.131 -0.218 56.284 1.00117.07 C \ ATOM 1316 O GLU D 72 -12.355 0.377 57.032 1.00117.35 O \ ATOM 1317 CB GLU D 72 -11.904 0.500 54.193 1.00108.15 C \ ATOM 1318 CG GLU D 72 -10.454 0.557 54.661 1.00112.07 C \ ATOM 1319 CD GLU D 72 -9.944 -0.788 55.146 1.00118.76 C \ ATOM 1320 OE1 GLU D 72 -9.752 -0.943 56.371 1.00118.96 O \ ATOM 1321 OE2 GLU D 72 -9.735 -1.690 54.308 1.00122.32 O \ ATOM 1322 N GLU D 73 -14.382 -0.544 56.591 1.00116.09 N \ ATOM 1323 CA GLU D 73 -14.919 -0.446 57.922 1.00116.82 C \ ATOM 1324 C GLU D 73 -14.315 -1.594 58.700 1.00119.00 C \ ATOM 1325 O GLU D 73 -14.956 -2.190 59.560 1.00118.06 O \ ATOM 1326 CB GLU D 73 -16.441 -0.552 57.898 1.00113.82 C \ ATOM 1327 CG GLU D 73 -16.990 -1.583 56.928 1.00118.78 C \ ATOM 1328 CD GLU D 73 -17.510 -2.845 57.599 1.00126.08 C \ ATOM 1329 OE1 GLU D 73 -18.068 -2.765 58.714 1.00127.66 O \ ATOM 1330 OE2 GLU D 73 -17.361 -3.933 57.006 1.00118.54 O \ ATOM 1331 N SER D 74 -13.062 -1.892 58.386 1.00113.30 N \ ATOM 1332 CA SER D 74 -12.370 -3.001 58.999 1.00107.65 C \ ATOM 1333 C SER D 74 -10.931 -3.084 58.512 1.00108.43 C \ ATOM 1334 O SER D 74 -10.421 -4.168 58.254 1.00103.82 O \ ATOM 1335 CB SER D 74 -13.121 -4.299 58.722 1.00 20.00 C \ ATOM 1336 OG SER D 74 -12.651 -4.936 57.559 1.00 20.00 O \ TER 1337 SER D 74 \ HETATM 1394 O HOH D 101 -30.294 -8.082 9.220 1.00 55.84 O \ CONECT 353 365 \ CONECT 365 353 \ CONECT 367 368 369 370 \ CONECT 368 367 \ CONECT 369 367 \ CONECT 370 367 \ CONECT 1026 1033 \ CONECT 1033 1026 \ CONECT 1035 1036 1037 1038 \ CONECT 1036 1035 \ CONECT 1037 1035 \ CONECT 1038 1035 \ CONECT 1338 1339 1340 1341 1342 \ CONECT 1339 1338 \ CONECT 1340 1338 \ CONECT 1341 1338 \ CONECT 1342 1338 \ CONECT 1343 1344 1345 \ CONECT 1344 1343 \ CONECT 1345 1343 1346 \ CONECT 1346 1345 \ CONECT 1347 1348 \ CONECT 1348 1347 1349 \ CONECT 1349 1348 1350 \ CONECT 1350 1349 1351 \ CONECT 1351 1350 1352 \ CONECT 1352 1351 1353 \ CONECT 1353 1352 1354 \ CONECT 1354 1353 1355 \ CONECT 1355 1354 1356 \ CONECT 1356 1355 1357 \ CONECT 1357 1356 \ MASTER 347 0 7 4 0 0 6 6 1374 4 32 14 \ END \ """, "5cmzchainD") cmd.hide("all") cmd.color('grey70', "5cmzchainD") cmd.show('cartoon', "5cmzchainD") cmd.center("5cmzchainD", state=0, origin=1) cmd.zoom("5cmzchainD", animate=-1) cmd.select("e5cmzD1", "c. D & i. 40-74") cmd.color("red", "e5cmzD1") cmd.disable("e5cmzD1")