cmd.read_pdbstr("""\ HEADER TOXIN/ANTITOXIN 19-SEP-18 6IFC \ TITLE CRYSTAL STRUCTURE OF VAPBC FROM SALMONELLA TYPHIMURIUM \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: TRNA(FMET)-SPECIFIC ENDONUCLEASE VAPC; \ COMPND 3 CHAIN: A, C, E, G; \ COMPND 4 SYNONYM: RNASE VAPC,TOXIN VAPC; \ COMPND 5 EC: 3.1.-.-; \ COMPND 6 ENGINEERED: YES; \ COMPND 7 MOL_ID: 2; \ COMPND 8 MOLECULE: ANTITOXIN VAPB; \ COMPND 9 CHAIN: B, F; \ COMPND 10 ENGINEERED: YES; \ COMPND 11 MOL_ID: 3; \ COMPND 12 MOLECULE: ANTITOXIN VAPB; \ COMPND 13 CHAIN: D, H; \ COMPND 14 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / \ SOURCE 3 ATCC 700720); \ SOURCE 4 ORGANISM_TAXID: 99287; \ SOURCE 5 STRAIN: LT2 / SGSC1412 / ATCC 700720; \ SOURCE 6 GENE: VAPC, STM3033; \ SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 9 MOL_ID: 2; \ SOURCE 10 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / \ SOURCE 11 ATCC 700720); \ SOURCE 12 ORGANISM_TAXID: 99287; \ SOURCE 13 STRAIN: LT2 / SGSC1412 / ATCC 700720; \ SOURCE 14 GENE: VAPB, STM3034; \ SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; \ SOURCE 17 MOL_ID: 3; \ SOURCE 18 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM (STRAIN LT2 / SGSC1412 / \ SOURCE 19 ATCC 700720); \ SOURCE 20 ORGANISM_TAXID: 99287; \ SOURCE 21 STRAIN: LT2 / SGSC1412 / ATCC 700720; \ SOURCE 22 GENE: VAPB, STM3034; \ SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 \ KEYWDS TOXIN-ANTITOXIN, TOXIN-ANTITOXIN COMPLEX \ EXPDTA X-RAY DIFFRACTION \ AUTHOR D.W.PARK,B.J.LEE \ REVDAT 3 22-NOV-23 6IFC 1 LINK \ REVDAT 2 26-FEB-20 6IFC 1 JRNL \ REVDAT 1 29-JAN-20 6IFC 0 \ JRNL AUTH D.PARK,H.J.YOON,K.Y.LEE,S.J.PARK,S.H.CHEON,H.H.LEE,S.J.LEE, \ JRNL AUTH 2 B.J.LEE \ JRNL TITL CRYSTAL STRUCTURE OF PROTEOLYZED VAPBC AND DNA-BOUND VAPBC \ JRNL TITL 2 FROM SALMONELLA ENTERICA TYPHIMURIUM LT2 AND VAPC AS A \ JRNL TITL 3 PUTATIVE CA2+-DEPENDENT RIBONUCLEASE. \ JRNL REF FASEB J. V. 34 3051 2020 \ JRNL REFN ESSN 1530-6860 \ JRNL PMID 31908032 \ JRNL DOI 10.1096/FJ.201901989R \ REMARK 2 \ REMARK 2 RESOLUTION. 1.99 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.8.0049 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : NULL \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.47 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL \ REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 \ REMARK 3 NUMBER OF REFLECTIONS : 36229 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 \ REMARK 3 R VALUE (WORKING SET) : 0.175 \ REMARK 3 FREE R VALUE : 0.238 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 \ REMARK 3 FREE R VALUE TEST SET COUNT : 1905 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 2581 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.46 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 \ REMARK 3 BIN FREE R VALUE SET COUNT : 141 \ REMARK 3 BIN FREE R VALUE : 0.2690 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 4976 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 4 \ REMARK 3 SOLVENT ATOMS : 206 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.65 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 1.53000 \ REMARK 3 B22 (A**2) : -0.98000 \ REMARK 3 B33 (A**2) : -0.28000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : -0.17000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 0.211 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.187 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.131 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.751 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5070 ; 0.016 ; 0.019 \ REMARK 3 BOND LENGTHS OTHERS (A): 4824 ; 0.001 ; 0.020 \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6848 ; 1.590 ; 1.951 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): 11082 ; 0.837 ; 3.000 \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 6.165 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;35.912 ;23.388 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 892 ;15.613 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;19.388 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.092 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5698 ; 0.007 ; 0.021 \ REMARK 3 GENERAL PLANES OTHERS (A): 1182 ; 0.001 ; 0.020 \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2504 ; 3.002 ; 3.380 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2503 ; 2.994 ; 3.379 \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3116 ; 4.257 ; 5.042 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3117 ; 4.256 ; 5.044 \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2566 ; 3.919 ; 3.860 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2567 ; 3.918 ; 3.861 \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3733 ; 6.022 ; 5.616 \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6018 ; 8.057 ;27.512 \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5976 ; 8.056 ;27.451 \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : NULL \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS \ REMARK 4 \ REMARK 4 6IFC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-SEP-18. \ REMARK 100 THE DEPOSITION ID IS D_1300008902. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 01-DEC-16 \ REMARK 200 TEMPERATURE (KELVIN) : 293 \ REMARK 200 PH : NULL \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : PAL/PLS \ REMARK 200 BEAMLINE : 5C (4A) \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : NONIUS KAPPA CCD \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 \ REMARK 200 DATA SCALING SOFTWARE : HKL-2000 \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38222 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 \ REMARK 200 RESOLUTION RANGE LOW (A) : 57.470 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 \ REMARK 200 DATA REDUNDANCY : 4.500 \ REMARK 200 R MERGE (I) : 0.09000 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 25.6100 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 \ REMARK 200 COMPLETENESS FOR SHELL (%) : NULL \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: MOLREP \ REMARK 200 STARTING MODEL: 3TND \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 42.53 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M CAPS/ \ REMARK 280 SODIUM HYDROXIDE PH 10.5, 2M AMMONIUM SULFATE, VAPOR DIFFUSION, \ REMARK 280 SITTING DROP, TEMPERATURE 293K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.47100 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 8020 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 13610 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 13400 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 ILE D 39 \ REMARK 465 ILE H 39 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC \ REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 \ REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A \ REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 \ REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE \ REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. \ REMARK 500 \ REMARK 500 DISTANCE CUTOFF: \ REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS \ REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE \ REMARK 500 OE2 GLU C 68 OE1 GLN E 75 1554 2.14 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 ARG A 55 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES \ REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES \ REMARK 500 ARG A 108 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES \ REMARK 500 ARG A 127 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 MET B 61 50.07 39.03 \ REMARK 500 LYS C 18 59.41 36.37 \ REMARK 500 SER C 31 -1.96 69.48 \ REMARK 500 ASP C 73 -169.50 -101.96 \ REMARK 500 GLU D 65 75.45 71.45 \ REMARK 500 SER E 31 -0.51 73.83 \ REMARK 500 ALA E 52 64.97 -115.41 \ REMARK 500 GLU F 65 102.98 65.22 \ REMARK 500 SER G 31 -0.91 72.87 \ REMARK 500 GLU H 65 65.75 77.24 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA A 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP A 7 OD2 \ REMARK 620 2 ASP A 98 OD1 112.7 \ REMARK 620 N 1 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA C 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP C 7 OD2 \ REMARK 620 2 ASP C 98 OD1 130.3 \ REMARK 620 N 1 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA E 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP E 7 OD2 \ REMARK 620 2 HOH E 316 O 100.2 \ REMARK 620 N 1 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 CA G 201 CA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ASP G 7 OD2 \ REMARK 620 2 ASP G 98 OD1 127.6 \ REMARK 620 N 1 \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC2 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC3 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA E 201 \ REMARK 800 \ REMARK 800 SITE_IDENTIFIER: AC4 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 201 \ DBREF 6IFC A 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC B 46 67 UNP Q7CPV2 VAPB_SALTY 46 67 \ DBREF 6IFC C 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC D 39 67 UNP Q7CPV2 VAPB_SALTY 39 67 \ DBREF 6IFC E 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC F 46 67 UNP Q7CPV2 VAPB_SALTY 46 67 \ DBREF 6IFC G 1 132 UNP Q8ZM86 VAPC_SALTY 1 132 \ DBREF 6IFC H 39 67 UNP Q7CPV2 VAPB_SALTY 39 67 \ SEQRES 1 A 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 A 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 A 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 A 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 A 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 A 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 A 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 A 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 A 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 A 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 A 132 TRP CYS \ SEQRES 1 B 22 SER TRP ASP SER TRP PHE ASP GLY GLU GLY ALA SER THR \ SEQRES 2 B 22 ASP PHE MET SER THR ARG GLU GLN PRO \ SEQRES 1 C 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 C 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 C 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 C 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 C 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 C 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 C 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 C 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 C 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 C 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 C 132 TRP CYS \ SEQRES 1 D 29 ILE ILE THR PRO VAL GLY GLU SER TRP ASP SER TRP PHE \ SEQRES 2 D 29 ASP GLY GLU GLY ALA SER THR ASP PHE MET SER THR ARG \ SEQRES 3 D 29 GLU GLN PRO \ SEQRES 1 E 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 E 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 E 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 E 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 E 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 E 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 E 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 E 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 E 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 E 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 E 132 TRP CYS \ SEQRES 1 F 22 SER TRP ASP SER TRP PHE ASP GLY GLU GLY ALA SER THR \ SEQRES 2 F 22 ASP PHE MET SER THR ARG GLU GLN PRO \ SEQRES 1 G 132 MET LEU LYS PHE MET LEU ASP THR ASN THR CYS ILE PHE \ SEQRES 2 G 132 THR ILE LYS ASN LYS PRO GLU HIS ILE ARG GLU ARG PHE \ SEQRES 3 G 132 ASN LEU ASN THR SER ARG MET CYS ILE SER SER ILE THR \ SEQRES 4 G 132 LEU MET GLU LEU ILE TYR GLY ALA GLU LYS SER LEU ALA \ SEQRES 5 G 132 PRO GLU ARG ASN LEU ALA VAL VAL GLU GLY PHE ILE SER \ SEQRES 6 G 132 ARG LEU GLU VAL LEU ASP TYR ASP THR GLN ALA ALA ILE \ SEQRES 7 G 132 HIS THR GLY GLN ILE ARG ALA GLU LEU ALA ARG LYS GLY \ SEQRES 8 G 132 THR PRO VAL GLY PRO TYR ASP GLN MET ILE ALA GLY HIS \ SEQRES 9 G 132 ALA GLY SER ARG GLY LEU VAL VAL VAL THR ASN ASN LEU \ SEQRES 10 G 132 ARG GLU PHE GLU ARG ILE PRO GLY ILE ARG ILE GLU ASP \ SEQRES 11 G 132 TRP CYS \ SEQRES 1 H 29 ILE ILE THR PRO VAL GLY GLU SER TRP ASP SER TRP PHE \ SEQRES 2 H 29 ASP GLY GLU GLY ALA SER THR ASP PHE MET SER THR ARG \ SEQRES 3 H 29 GLU GLN PRO \ HET CA A 201 1 \ HET CA C 201 1 \ HET CA E 201 1 \ HET CA G 201 1 \ HETNAM CA CALCIUM ION \ FORMUL 9 CA 4(CA 2+) \ FORMUL 13 HOH *206(H2 O) \ HELIX 1 AA1 ASP A 7 LYS A 18 1 12 \ HELIX 2 AA2 PRO A 19 ASN A 29 1 11 \ HELIX 3 AA3 SER A 37 SER A 50 1 14 \ HELIX 4 AA4 ALA A 52 ARG A 66 1 15 \ HELIX 5 AA5 ASP A 73 LYS A 90 1 18 \ HELIX 6 AA6 GLY A 95 ARG A 108 1 14 \ HELIX 7 AA7 ASN A 116 GLU A 121 1 6 \ HELIX 8 AA8 TRP B 47 ASP B 52 1 6 \ HELIX 9 AA9 ASP C 7 LYS C 18 1 12 \ HELIX 10 AB1 PRO C 19 ASN C 29 1 11 \ HELIX 11 AB2 SER C 37 SER C 50 1 14 \ HELIX 12 AB3 ALA C 52 SER C 65 1 14 \ HELIX 13 AB4 ASP C 73 GLY C 91 1 19 \ HELIX 14 AB5 GLY C 95 ARG C 108 1 14 \ HELIX 15 AB6 ASN C 116 ARG C 122 1 7 \ HELIX 16 AB7 SER D 46 ASP D 52 1 7 \ HELIX 17 AB8 ASP E 7 LYS E 18 1 12 \ HELIX 18 AB9 PRO E 19 ASN E 29 1 11 \ HELIX 19 AC1 SER E 37 SER E 50 1 14 \ HELIX 20 AC2 ALA E 52 ARG E 66 1 15 \ HELIX 21 AC3 ASP E 73 GLY E 91 1 19 \ HELIX 22 AC4 GLY E 95 ARG E 108 1 14 \ HELIX 23 AC5 ASN E 116 GLU E 121 1 6 \ HELIX 24 AC6 TRP F 47 ASP F 52 1 6 \ HELIX 25 AC7 ASP G 7 LYS G 18 1 12 \ HELIX 26 AC8 PRO G 19 ASN G 29 1 11 \ HELIX 27 AC9 SER G 37 SER G 50 1 14 \ HELIX 28 AD1 ALA G 52 SER G 65 1 14 \ HELIX 29 AD2 ASP G 73 GLY G 91 1 19 \ HELIX 30 AD3 GLY G 95 ARG G 108 1 14 \ HELIX 31 AD4 ASN G 116 GLU G 121 1 6 \ HELIX 32 AD5 SER H 46 GLY H 53 1 8 \ SHEET 1 AA110 GLU A 68 LEU A 70 0 \ SHEET 2 AA110 MET A 33 SER A 36 1 N ILE A 35 O LEU A 70 \ SHEET 3 AA110 PHE A 4 LEU A 6 1 N LEU A 6 O CYS A 34 \ SHEET 4 AA110 VAL A 111 VAL A 113 1 O VAL A 111 N MET A 5 \ SHEET 5 AA110 ARG A 127 GLU A 129 1 O ARG A 127 N VAL A 112 \ SHEET 6 AA110 ILE E 128 ASP E 130 1 O ASP E 130 N ILE A 128 \ SHEET 7 AA110 VAL E 111 VAL E 113 1 N VAL E 112 O GLU E 129 \ SHEET 8 AA110 PHE E 4 LEU E 6 1 N MET E 5 O VAL E 111 \ SHEET 9 AA110 MET E 33 SER E 36 1 O CYS E 34 N LEU E 6 \ SHEET 10 AA110 GLU E 68 LEU E 70 1 O LEU E 70 N ILE E 35 \ SHEET 1 AA2 5 GLU C 68 LEU C 70 0 \ SHEET 2 AA2 5 MET C 33 SER C 36 1 N ILE C 35 O LEU C 70 \ SHEET 3 AA2 5 PHE C 4 LEU C 6 1 N LEU C 6 O CYS C 34 \ SHEET 4 AA2 5 VAL C 111 VAL C 113 1 O VAL C 111 N MET C 5 \ SHEET 5 AA2 5 ILE C 128 GLU C 129 1 O GLU C 129 N VAL C 112 \ SHEET 1 AA3 5 GLU G 68 LEU G 70 0 \ SHEET 2 AA3 5 MET G 33 SER G 36 1 N ILE G 35 O LEU G 70 \ SHEET 3 AA3 5 PHE G 4 LEU G 6 1 N LEU G 6 O CYS G 34 \ SHEET 4 AA3 5 VAL G 111 VAL G 113 1 O VAL G 111 N MET G 5 \ SHEET 5 AA3 5 ILE G 128 GLU G 129 1 O GLU G 129 N VAL G 112 \ LINK OD2 ASP A 7 CA CA A 201 1555 1555 2.74 \ LINK OD1 ASP A 98 CA CA A 201 1555 1555 2.64 \ LINK OD2 ASP C 7 CA CA C 201 1555 1555 2.57 \ LINK OD1 ASP C 98 CA CA C 201 1555 1555 2.99 \ LINK OD2 ASP E 7 CA CA E 201 1555 1555 2.89 \ LINK CA CA E 201 O HOH E 316 1555 1555 2.99 \ LINK OD2 ASP G 7 CA CA G 201 1555 1555 2.88 \ LINK OD1 ASP G 98 CA CA G 201 1555 1555 2.78 \ SITE 1 AC1 5 ASP A 7 THR A 8 ASP A 98 ILE A 101 \ SITE 2 AC1 5 ARG B 64 \ SITE 1 AC2 5 ASP C 7 THR C 8 ASN C 9 ASP C 98 \ SITE 2 AC2 5 ARG D 64 \ SITE 1 AC3 6 ASP E 7 THR E 8 ASN E 9 ASP E 98 \ SITE 2 AC3 6 HOH E 316 ARG F 64 \ SITE 1 AC4 5 ASP G 7 THR G 8 ASN G 9 ASP G 98 \ SITE 2 AC4 5 ARG H 64 \ CRYST1 53.956 114.942 53.998 90.00 114.12 90.00 P 1 21 1 8 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.018534 0.000000 0.008299 0.00000 \ SCALE2 0.000000 0.008700 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.020291 0.00000 \ TER 1046 CYS A 132 \ TER 1225 PRO B 67 \ TER 2271 CYS C 132 \ ATOM 2272 N ILE D 40 -10.608 27.467 -28.449 1.00 55.54 N \ ATOM 2273 CA ILE D 40 -11.337 28.287 -27.440 1.00 56.36 C \ ATOM 2274 C ILE D 40 -11.396 27.564 -26.089 1.00 58.01 C \ ATOM 2275 O ILE D 40 -12.067 26.538 -25.940 1.00 60.10 O \ ATOM 2276 CB ILE D 40 -12.772 28.620 -27.889 1.00 63.25 C \ ATOM 2277 CG1 ILE D 40 -12.782 29.241 -29.309 1.00 69.52 C \ ATOM 2278 CG2 ILE D 40 -13.414 29.577 -26.890 1.00 61.81 C \ ATOM 2279 CD1 ILE D 40 -13.999 28.896 -30.148 1.00 68.18 C \ ATOM 2280 N THR D 41 -10.729 28.146 -25.104 1.00 47.08 N \ ATOM 2281 CA THR D 41 -10.477 27.525 -23.836 1.00 46.17 C \ ATOM 2282 C THR D 41 -11.469 28.083 -22.832 1.00 45.41 C \ ATOM 2283 O THR D 41 -11.579 29.296 -22.669 1.00 45.73 O \ ATOM 2284 CB THR D 41 -9.038 27.845 -23.375 1.00 45.99 C \ ATOM 2285 OG1 THR D 41 -8.106 27.349 -24.350 1.00 48.83 O \ ATOM 2286 CG2 THR D 41 -8.729 27.207 -22.010 1.00 45.66 C \ ATOM 2287 N PRO D 42 -12.215 27.211 -22.154 1.00 40.93 N \ ATOM 2288 CA PRO D 42 -13.160 27.751 -21.168 1.00 41.17 C \ ATOM 2289 C PRO D 42 -12.405 28.330 -19.987 1.00 41.77 C \ ATOM 2290 O PRO D 42 -11.370 27.788 -19.580 1.00 37.08 O \ ATOM 2291 CB PRO D 42 -13.961 26.530 -20.744 1.00 42.48 C \ ATOM 2292 CG PRO D 42 -13.825 25.591 -21.918 1.00 39.85 C \ ATOM 2293 CD PRO D 42 -12.464 25.800 -22.451 1.00 41.46 C \ ATOM 2294 N VAL D 43 -12.895 29.437 -19.469 1.00 40.32 N \ ATOM 2295 CA VAL D 43 -12.233 30.068 -18.347 1.00 44.17 C \ ATOM 2296 C VAL D 43 -13.270 30.457 -17.305 1.00 41.87 C \ ATOM 2297 O VAL D 43 -14.400 30.759 -17.647 1.00 37.45 O \ ATOM 2298 CB VAL D 43 -11.392 31.282 -18.819 1.00 46.21 C \ ATOM 2299 CG1 VAL D 43 -12.300 32.374 -19.401 1.00 48.16 C \ ATOM 2300 CG2 VAL D 43 -10.560 31.817 -17.670 1.00 48.96 C \ ATOM 2301 N GLY D 44 -12.885 30.399 -16.029 1.00 44.05 N \ ATOM 2302 CA GLY D 44 -13.714 30.923 -14.952 1.00 45.21 C \ ATOM 2303 C GLY D 44 -13.723 32.448 -14.895 1.00 43.79 C \ ATOM 2304 O GLY D 44 -13.278 33.117 -15.815 1.00 41.63 O \ ATOM 2305 N GLU D 45 -14.262 32.989 -13.811 1.00 42.86 N \ ATOM 2306 CA GLU D 45 -14.080 34.388 -13.484 1.00 41.38 C \ ATOM 2307 C GLU D 45 -12.575 34.721 -13.453 1.00 37.68 C \ ATOM 2308 O GLU D 45 -11.714 33.830 -13.337 1.00 29.64 O \ ATOM 2309 CB GLU D 45 -14.663 34.670 -12.127 1.00 45.09 C \ ATOM 2310 CG GLU D 45 -16.170 34.632 -12.012 1.00 49.01 C \ ATOM 2311 CD GLU D 45 -16.584 35.112 -10.621 1.00 55.52 C \ ATOM 2312 OE1 GLU D 45 -16.408 34.355 -9.646 1.00 56.72 O \ ATOM 2313 OE2 GLU D 45 -17.017 36.275 -10.479 1.00 60.83 O \ ATOM 2314 N SER D 46 -12.252 36.003 -13.569 1.00 30.46 N \ ATOM 2315 CA SER D 46 -10.875 36.359 -13.734 1.00 30.96 C \ ATOM 2316 C SER D 46 -10.122 36.220 -12.456 1.00 26.00 C \ ATOM 2317 O SER D 46 -10.621 36.492 -11.373 1.00 29.21 O \ ATOM 2318 CB SER D 46 -10.748 37.792 -14.250 1.00 32.77 C \ ATOM 2319 OG SER D 46 -11.133 38.689 -13.247 1.00 33.27 O \ ATOM 2320 N TRP D 47 -8.845 35.933 -12.582 1.00 25.87 N \ ATOM 2321 CA TRP D 47 -8.001 35.985 -11.402 1.00 24.12 C \ ATOM 2322 C TRP D 47 -7.847 37.354 -10.704 1.00 22.85 C \ ATOM 2323 O TRP D 47 -7.872 37.445 -9.449 1.00 25.09 O \ ATOM 2324 CB TRP D 47 -6.660 35.331 -11.739 1.00 25.79 C \ ATOM 2325 CG TRP D 47 -6.759 33.812 -11.591 1.00 22.10 C \ ATOM 2326 CD1 TRP D 47 -6.646 32.905 -12.561 1.00 23.99 C \ ATOM 2327 CD2 TRP D 47 -7.016 33.080 -10.378 1.00 22.84 C \ ATOM 2328 NE1 TRP D 47 -6.753 31.634 -12.050 1.00 25.08 N \ ATOM 2329 CE2 TRP D 47 -6.990 31.716 -10.702 1.00 23.70 C \ ATOM 2330 CE3 TRP D 47 -7.230 33.443 -9.055 1.00 20.99 C \ ATOM 2331 CZ2 TRP D 47 -7.204 30.724 -9.752 1.00 22.68 C \ ATOM 2332 CZ3 TRP D 47 -7.426 32.466 -8.117 1.00 21.82 C \ ATOM 2333 CH2 TRP D 47 -7.391 31.112 -8.467 1.00 23.02 C \ ATOM 2334 N ASP D 48 -7.757 38.411 -11.475 1.00 26.13 N \ ATOM 2335 CA ASP D 48 -7.609 39.763 -10.919 1.00 28.98 C \ ATOM 2336 C ASP D 48 -8.787 40.137 -10.038 1.00 30.00 C \ ATOM 2337 O ASP D 48 -8.628 40.806 -9.002 1.00 34.39 O \ ATOM 2338 CB ASP D 48 -7.465 40.746 -12.089 1.00 28.40 C \ ATOM 2339 CG ASP D 48 -6.039 40.717 -12.708 1.00 34.24 C \ ATOM 2340 OD1 ASP D 48 -5.142 39.992 -12.201 1.00 31.95 O \ ATOM 2341 OD2 ASP D 48 -5.830 41.423 -13.716 1.00 37.58 O \ ATOM 2342 N SER D 49 -9.985 39.718 -10.431 1.00 27.97 N \ ATOM 2343 CA SER D 49 -11.191 39.996 -9.629 1.00 29.43 C \ ATOM 2344 C SER D 49 -11.142 39.324 -8.252 1.00 28.48 C \ ATOM 2345 O SER D 49 -11.639 39.846 -7.253 1.00 31.04 O \ ATOM 2346 CB SER D 49 -12.488 39.589 -10.397 1.00 31.50 C \ ATOM 2347 OG SER D 49 -12.580 38.157 -10.624 1.00 32.38 O \ ATOM 2348 N TRP D 50 -10.521 38.157 -8.190 1.00 26.68 N \ ATOM 2349 CA TRP D 50 -10.246 37.544 -6.920 1.00 24.22 C \ ATOM 2350 C TRP D 50 -9.082 38.165 -6.138 1.00 24.81 C \ ATOM 2351 O TRP D 50 -9.217 38.429 -4.934 1.00 23.42 O \ ATOM 2352 CB TRP D 50 -9.945 36.049 -7.098 1.00 24.13 C \ ATOM 2353 CG TRP D 50 -9.826 35.361 -5.765 1.00 23.42 C \ ATOM 2354 CD1 TRP D 50 -10.845 34.896 -4.966 1.00 22.49 C \ ATOM 2355 CD2 TRP D 50 -8.615 35.096 -5.087 1.00 21.91 C \ ATOM 2356 NE1 TRP D 50 -10.318 34.392 -3.797 1.00 21.36 N \ ATOM 2357 CE2 TRP D 50 -8.936 34.484 -3.882 1.00 22.49 C \ ATOM 2358 CE3 TRP D 50 -7.267 35.297 -5.413 1.00 22.11 C \ ATOM 2359 CZ2 TRP D 50 -7.958 34.063 -3.002 1.00 24.39 C \ ATOM 2360 CZ3 TRP D 50 -6.309 34.935 -4.526 1.00 25.28 C \ ATOM 2361 CH2 TRP D 50 -6.645 34.293 -3.339 1.00 25.18 C \ ATOM 2362 N PHE D 51 -7.923 38.339 -6.788 1.00 27.53 N \ ATOM 2363 CA PHE D 51 -6.766 38.963 -6.104 1.00 29.20 C \ ATOM 2364 C PHE D 51 -7.131 40.372 -5.551 1.00 32.11 C \ ATOM 2365 O PHE D 51 -6.780 40.737 -4.434 1.00 34.76 O \ ATOM 2366 CB PHE D 51 -5.606 39.083 -7.050 1.00 27.82 C \ ATOM 2367 CG PHE D 51 -4.767 37.868 -7.092 1.00 25.62 C \ ATOM 2368 CD1 PHE D 51 -5.109 36.810 -7.880 1.00 24.83 C \ ATOM 2369 CD2 PHE D 51 -3.599 37.799 -6.327 1.00 27.99 C \ ATOM 2370 CE1 PHE D 51 -4.303 35.668 -7.913 1.00 29.64 C \ ATOM 2371 CE2 PHE D 51 -2.789 36.689 -6.369 1.00 25.02 C \ ATOM 2372 CZ PHE D 51 -3.142 35.611 -7.146 1.00 25.49 C \ ATOM 2373 N ASP D 52 -7.884 41.122 -6.324 1.00 31.38 N \ ATOM 2374 CA ASP D 52 -8.325 42.420 -5.868 1.00 34.64 C \ ATOM 2375 C ASP D 52 -9.465 42.376 -4.891 1.00 38.50 C \ ATOM 2376 O ASP D 52 -9.738 43.397 -4.306 1.00 40.33 O \ ATOM 2377 CB ASP D 52 -8.686 43.327 -7.043 1.00 31.97 C \ ATOM 2378 CG ASP D 52 -7.453 43.794 -7.777 1.00 33.87 C \ ATOM 2379 OD1 ASP D 52 -6.318 43.563 -7.282 1.00 29.53 O \ ATOM 2380 OD2 ASP D 52 -7.595 44.372 -8.850 1.00 36.05 O \ ATOM 2381 N GLY D 53 -10.114 41.227 -4.679 1.00 40.30 N \ ATOM 2382 CA GLY D 53 -11.204 41.118 -3.659 1.00 40.18 C \ ATOM 2383 C GLY D 53 -10.755 41.409 -2.220 1.00 42.14 C \ ATOM 2384 O GLY D 53 -9.572 41.425 -1.935 1.00 35.93 O \ ATOM 2385 N GLU D 54 -11.674 41.637 -1.280 1.00 45.94 N \ ATOM 2386 CA GLU D 54 -11.210 41.820 0.098 1.00 50.23 C \ ATOM 2387 C GLU D 54 -10.978 40.418 0.599 1.00 47.96 C \ ATOM 2388 O GLU D 54 -11.734 39.529 0.278 1.00 55.74 O \ ATOM 2389 CB GLU D 54 -12.193 42.597 0.983 1.00 62.46 C \ ATOM 2390 CG GLU D 54 -11.511 43.195 2.222 1.00 70.15 C \ ATOM 2391 CD GLU D 54 -12.227 44.416 2.806 1.00 75.68 C \ ATOM 2392 OE1 GLU D 54 -13.479 44.411 2.871 1.00 78.01 O \ ATOM 2393 OE2 GLU D 54 -11.534 45.380 3.219 1.00 74.47 O \ ATOM 2394 N GLY D 55 -9.921 40.219 1.364 1.00 44.67 N \ ATOM 2395 CA GLY D 55 -9.417 38.890 1.568 1.00 42.42 C \ ATOM 2396 C GLY D 55 -9.864 38.233 2.858 1.00 40.95 C \ ATOM 2397 O GLY D 55 -10.957 38.463 3.393 1.00 34.73 O \ ATOM 2398 N ALA D 56 -8.967 37.421 3.363 1.00 37.29 N \ ATOM 2399 CA ALA D 56 -9.200 36.670 4.555 1.00 38.31 C \ ATOM 2400 C ALA D 56 -8.961 37.538 5.809 1.00 42.14 C \ ATOM 2401 O ALA D 56 -8.106 38.420 5.806 1.00 40.13 O \ ATOM 2402 CB ALA D 56 -8.235 35.507 4.564 1.00 35.46 C \ ATOM 2403 N SER D 57 -9.637 37.221 6.902 1.00 42.13 N \ ATOM 2404 CA SER D 57 -9.268 37.811 8.190 1.00 41.06 C \ ATOM 2405 C SER D 57 -7.784 37.565 8.495 1.00 39.31 C \ ATOM 2406 O SER D 57 -7.121 36.719 7.876 1.00 31.55 O \ ATOM 2407 CB SER D 57 -10.086 37.189 9.301 1.00 39.03 C \ ATOM 2408 OG SER D 57 -9.712 35.827 9.412 1.00 39.54 O \ ATOM 2409 N THR D 58 -7.268 38.285 9.491 1.00 39.65 N \ ATOM 2410 CA THR D 58 -5.815 38.270 9.774 1.00 39.96 C \ ATOM 2411 C THR D 58 -5.327 36.982 10.359 1.00 38.66 C \ ATOM 2412 O THR D 58 -4.208 36.532 10.071 1.00 46.05 O \ ATOM 2413 CB THR D 58 -5.457 39.385 10.770 1.00 43.96 C \ ATOM 2414 OG1 THR D 58 -6.314 40.500 10.505 1.00 46.26 O \ ATOM 2415 CG2 THR D 58 -3.992 39.775 10.620 1.00 42.99 C \ ATOM 2416 N ASP D 59 -6.173 36.385 11.191 1.00 40.05 N \ ATOM 2417 CA ASP D 59 -5.859 35.121 11.840 1.00 42.39 C \ ATOM 2418 C ASP D 59 -5.894 33.906 10.878 1.00 40.82 C \ ATOM 2419 O ASP D 59 -5.362 32.857 11.216 1.00 51.45 O \ ATOM 2420 CB ASP D 59 -6.825 34.862 13.010 1.00 42.41 C \ ATOM 2421 CG ASP D 59 -8.275 34.692 12.543 1.00 45.26 C \ ATOM 2422 OD1 ASP D 59 -8.763 35.580 11.811 1.00 40.08 O \ ATOM 2423 OD2 ASP D 59 -8.916 33.668 12.899 1.00 49.86 O \ ATOM 2424 N PHE D 60 -6.479 34.036 9.695 1.00 39.21 N \ ATOM 2425 CA PHE D 60 -6.695 32.846 8.830 1.00 38.57 C \ ATOM 2426 C PHE D 60 -5.394 32.064 8.648 1.00 37.70 C \ ATOM 2427 O PHE D 60 -4.419 32.572 8.071 1.00 45.24 O \ ATOM 2428 CB PHE D 60 -7.292 33.236 7.472 1.00 35.26 C \ ATOM 2429 CG PHE D 60 -7.378 32.089 6.471 1.00 34.46 C \ ATOM 2430 CD1 PHE D 60 -8.414 31.168 6.532 1.00 31.57 C \ ATOM 2431 CD2 PHE D 60 -6.393 31.918 5.493 1.00 31.63 C \ ATOM 2432 CE1 PHE D 60 -8.517 30.136 5.579 1.00 30.81 C \ ATOM 2433 CE2 PHE D 60 -6.469 30.877 4.577 1.00 32.11 C \ ATOM 2434 CZ PHE D 60 -7.538 29.990 4.618 1.00 32.31 C \ ATOM 2435 N MET D 61 -5.380 30.859 9.203 1.00 32.23 N \ ATOM 2436 CA MET D 61 -4.299 29.935 9.022 1.00 35.91 C \ ATOM 2437 C MET D 61 -2.965 30.591 9.253 1.00 39.95 C \ ATOM 2438 O MET D 61 -2.053 30.504 8.433 1.00 37.64 O \ ATOM 2439 CB MET D 61 -4.368 29.314 7.634 1.00 36.79 C \ ATOM 2440 CG MET D 61 -5.516 28.316 7.540 1.00 42.39 C \ ATOM 2441 SD MET D 61 -5.629 27.443 5.957 1.00 42.01 S \ ATOM 2442 CE MET D 61 -5.004 25.841 6.484 1.00 43.83 C \ ATOM 2443 N SER D 62 -2.860 31.284 10.374 1.00 47.05 N \ ATOM 2444 CA SER D 62 -1.587 31.848 10.752 1.00 52.36 C \ ATOM 2445 C SER D 62 -0.646 30.659 10.936 1.00 55.86 C \ ATOM 2446 O SER D 62 0.524 30.734 10.568 1.00 58.61 O \ ATOM 2447 CB SER D 62 -1.717 32.713 11.994 1.00 50.97 C \ ATOM 2448 OG SER D 62 -2.175 31.933 13.072 1.00 54.51 O \ ATOM 2449 N THR D 63 -1.171 29.546 11.453 1.00 59.55 N \ ATOM 2450 CA THR D 63 -0.473 28.257 11.354 1.00 61.30 C \ ATOM 2451 C THR D 63 -1.302 27.279 10.507 1.00 60.57 C \ ATOM 2452 O THR D 63 -2.530 27.405 10.384 1.00 63.65 O \ ATOM 2453 CB THR D 63 -0.129 27.645 12.740 1.00 62.20 C \ ATOM 2454 OG1 THR D 63 -1.285 27.031 13.318 1.00 65.10 O \ ATOM 2455 CG2 THR D 63 0.436 28.715 13.698 1.00 59.61 C \ ATOM 2456 N ARG D 64 -0.615 26.319 9.903 1.00 57.09 N \ ATOM 2457 CA ARG D 64 -1.269 25.359 9.015 1.00 57.10 C \ ATOM 2458 C ARG D 64 -1.796 24.144 9.782 1.00 64.03 C \ ATOM 2459 O ARG D 64 -2.932 23.693 9.543 1.00 63.13 O \ ATOM 2460 CB ARG D 64 -0.311 24.897 7.941 1.00 52.42 C \ ATOM 2461 CG ARG D 64 -0.866 23.790 7.051 1.00 44.72 C \ ATOM 2462 CD ARG D 64 0.230 23.303 6.131 1.00 41.22 C \ ATOM 2463 NE ARG D 64 -0.220 22.216 5.271 1.00 40.67 N \ ATOM 2464 CZ ARG D 64 0.586 21.484 4.508 1.00 38.23 C \ ATOM 2465 NH1 ARG D 64 1.916 21.700 4.509 1.00 42.39 N \ ATOM 2466 NH2 ARG D 64 0.074 20.543 3.736 1.00 32.03 N \ ATOM 2467 N GLU D 65 -0.953 23.628 10.682 1.00 64.19 N \ ATOM 2468 CA GLU D 65 -1.246 22.447 11.490 1.00 66.03 C \ ATOM 2469 C GLU D 65 -1.231 21.146 10.658 1.00 69.88 C \ ATOM 2470 O GLU D 65 -2.274 20.559 10.308 1.00 63.10 O \ ATOM 2471 CB GLU D 65 -2.547 22.625 12.285 1.00 66.78 C \ ATOM 2472 CG GLU D 65 -2.450 23.731 13.327 1.00 67.98 C \ ATOM 2473 CD GLU D 65 -3.761 23.956 14.047 1.00 73.35 C \ ATOM 2474 OE1 GLU D 65 -4.272 23.009 14.683 1.00 80.21 O \ ATOM 2475 OE2 GLU D 65 -4.286 25.085 13.971 1.00 72.33 O \ ATOM 2476 N GLN D 66 -0.013 20.722 10.342 1.00 62.94 N \ ATOM 2477 CA GLN D 66 0.222 19.406 9.798 1.00 60.82 C \ ATOM 2478 C GLN D 66 0.942 18.629 10.893 1.00 57.19 C \ ATOM 2479 O GLN D 66 1.923 19.123 11.461 1.00 61.24 O \ ATOM 2480 CB GLN D 66 1.060 19.481 8.529 1.00 53.26 C \ ATOM 2481 CG GLN D 66 1.092 18.201 7.703 1.00 47.16 C \ ATOM 2482 CD GLN D 66 1.818 18.367 6.379 1.00 43.04 C \ ATOM 2483 OE1 GLN D 66 1.834 17.489 5.548 1.00 31.29 O \ ATOM 2484 NE2 GLN D 66 2.483 19.491 6.218 1.00 49.92 N \ ATOM 2485 N PRO D 67 0.425 17.435 11.223 1.00 55.81 N \ ATOM 2486 CA PRO D 67 1.067 16.611 12.238 1.00 58.30 C \ ATOM 2487 C PRO D 67 2.497 16.170 11.860 1.00 61.40 C \ ATOM 2488 O PRO D 67 2.688 15.074 11.327 1.00 59.12 O \ ATOM 2489 CB PRO D 67 0.105 15.420 12.363 1.00 53.51 C \ ATOM 2490 CG PRO D 67 -1.234 15.999 12.023 1.00 54.23 C \ ATOM 2491 CD PRO D 67 -0.942 16.955 10.908 1.00 53.62 C \ TER 2492 PRO D 67 \ TER 3538 CYS E 132 \ TER 3717 PRO F 67 \ TER 4763 CYS G 132 \ TER 4984 PRO H 67 \ HETATM 5099 O HOH D 101 -10.857 41.156 -13.215 1.00 57.93 O \ HETATM 5100 O HOH D 102 -3.535 42.033 -14.655 1.00 59.10 O \ HETATM 5101 O HOH D 103 1.575 23.354 10.405 1.00 54.27 O \ HETATM 5102 O HOH D 104 0.353 30.898 7.570 1.00 37.59 O \ HETATM 5103 O HOH D 105 -9.644 32.846 -14.715 1.00 47.81 O \ HETATM 5104 O HOH D 106 -4.725 36.545 6.652 1.00 44.20 O \ HETATM 5105 O HOH D 107 -7.442 29.504 10.328 1.00 30.89 O \ HETATM 5106 O HOH D 108 -10.682 25.181 -19.113 1.00 37.23 O \ HETATM 5107 O HOH D 109 -15.548 30.577 -20.144 1.00 41.31 O \ HETATM 5108 O HOH D 110 -8.320 35.092 -15.167 1.00 43.81 O \ HETATM 5109 O HOH D 111 -14.230 37.942 -14.150 1.00 40.13 O \ HETATM 5110 O HOH D 112 -15.109 30.897 -11.991 1.00 39.94 O \ HETATM 5111 O HOH D 113 -9.209 40.455 10.151 1.00 40.04 O \ HETATM 5112 O HOH D 114 2.363 29.672 8.422 1.00 52.06 O \ HETATM 5113 O HOH D 115 -6.591 40.711 0.687 1.00 42.11 O \ CONECT 60 4985 \ CONECT 776 4985 \ CONECT 1285 4986 \ CONECT 2001 4986 \ CONECT 2552 4987 \ CONECT 3777 4988 \ CONECT 4493 4988 \ CONECT 4985 60 776 \ CONECT 4986 1285 2001 \ CONECT 4987 2552 5129 \ CONECT 4988 3777 4493 \ CONECT 5129 4987 \ MASTER 370 0 4 32 20 0 8 6 5186 8 12 54 \ END \ """, "6ifcchainD") cmd.hide("all") cmd.color('grey70', "6ifcchainD") cmd.show('cartoon', "6ifcchainD") cmd.center("6ifcchainD", state=0, origin=1) cmd.zoom("6ifcchainD", animate=-1) cmd.select("e6ifcD1", "c. D & i. 40-67") cmd.color("red", "e6ifcD1") cmd.disable("e6ifcD1")