cmd.read_pdbstr("""\ HEADER IMMUNE SYSTEM/CHAPERONE 12-NOV-13 4NKM \ TITLE CRYSTAL STRUCTURE OF ENGINEERED ANTI-EE SCFV ANTIBODY FRAGMENT \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: ENGINEERED SCFV; \ COMPND 3 CHAIN: A, B, C, D; \ COMPND 4 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; \ SOURCE 3 ORGANISM_COMMON: MOUSE; \ SOURCE 4 ORGANISM_TAXID: 10090; \ SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; \ SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 \ KEYWDS ANTIBODY FRAGMENT, EYMPME BINDING, IMMUNE SYSTEM, IMMUNE SYSTEM- \ KEYWDS 2 CHAPERONE COMPLEX \ EXPDTA X-RAY DIFFRACTION \ AUTHOR S.KALYONCU,J.HYUN,J.C.PAI,J.L.JOHNSON,K.ETZMINGER,A.JAIN,D.HEANER \ AUTHOR 2 JR.,I.A.MOLARES,T.M.TRUSKETT,J.A.MAYNARD,R.L.LIEBERMAN \ REVDAT 7 20-NOV-24 4NKM 1 REMARK \ REVDAT 6 27-MAR-24 4NKM 1 COMPND SOURCE REMARK DBREF \ REVDAT 6 2 1 SEQRES HELIX SHEET SSBOND \ REVDAT 6 3 1 ATOM \ REVDAT 5 20-SEP-23 4NKM 1 REMARK \ REVDAT 4 22-NOV-17 4NKM 1 REMARK \ REVDAT 3 03-SEP-14 4NKM 1 JRNL \ REVDAT 2 09-APR-14 4NKM 1 JRNL \ REVDAT 1 12-MAR-14 4NKM 0 \ JRNL AUTH S.KALYONCU,J.HYUN,J.C.PAI,J.L.JOHNSON,K.ENTZMINGER,A.JAIN, \ JRNL AUTH 2 D.P.HEANER,I.A.MORALES,T.M.TRUSKETT,J.A.MAYNARD, \ JRNL AUTH 3 R.L.LIEBERMAN \ JRNL TITL EFFECTS OF PROTEIN ENGINEERING AND RATIONAL MUTAGENESIS ON \ JRNL TITL 2 CRYSTAL LATTICE OF SINGLE CHAIN ANTIBODY FRAGMENTS. \ JRNL REF PROTEINS V. 82 1884 2014 \ JRNL REFN ISSN 0887-3585 \ JRNL PMID 24615866 \ JRNL DOI 10.1002/PROT.24542 \ REMARK 2 \ REMARK 2 RESOLUTION. 3.71 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) \ REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN \ REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, \ REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, \ REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, \ REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, \ REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, \ REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT \ REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : ML \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.71 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.10 \ REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 \ REMARK 3 COMPLETENESS FOR RANGE (%) : NULL \ REMARK 3 NUMBER OF REFLECTIONS : 11280 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 \ REMARK 3 R VALUE (WORKING SET) : 0.264 \ REMARK 3 FREE R VALUE : 0.282 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 \ REMARK 3 FREE R VALUE TEST SET COUNT : 551 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). \ REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE \ REMARK 3 1 46.1320 - 5.8868 0.87 2819 147 0.2471 0.2310 \ REMARK 3 2 5.8868 - 4.6740 0.86 2755 128 0.2526 0.3160 \ REMARK 3 3 4.6740 - 4.0836 0.85 2687 150 0.2690 0.3074 \ REMARK 3 4 4.0836 - 3.7104 0.78 2468 126 0.3232 0.3538 \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL \ REMARK 3 SOLVENT RADIUS : 1.11 \ REMARK 3 SHRINKAGE RADIUS : 0.90 \ REMARK 3 K_SOL : NULL \ REMARK 3 B_SOL : NULL \ REMARK 3 \ REMARK 3 ERROR ESTIMATES. \ REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 \ REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 35.200 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : NULL \ REMARK 3 B22 (A**2) : NULL \ REMARK 3 B33 (A**2) : NULL \ REMARK 3 B12 (A**2) : NULL \ REMARK 3 B13 (A**2) : NULL \ REMARK 3 B23 (A**2) : NULL \ REMARK 3 \ REMARK 3 TWINNING INFORMATION. \ REMARK 3 FRACTION: NULL \ REMARK 3 OPERATOR: NULL \ REMARK 3 \ REMARK 3 DEVIATIONS FROM IDEAL VALUES. \ REMARK 3 RMSD COUNT \ REMARK 3 BOND : 0.003 7400 \ REMARK 3 ANGLE : 0.867 10004 \ REMARK 3 CHIRALITY : 0.031 1084 \ REMARK 3 PLANARITY : 0.003 1272 \ REMARK 3 DIHEDRAL : 14.320 2680 \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 NCS DETAILS \ REMARK 3 NUMBER OF NCS GROUPS : 2 \ REMARK 3 NCS GROUP : 1 \ REMARK 3 NCS GROUP : 2 \ REMARK 3 NCS OPERATOR : 1 \ REMARK 3 REFERENCE SELECTION: NULL \ REMARK 3 SELECTION : NULL \ REMARK 3 ATOM PAIRS NUMBER : NULL \ REMARK 3 RMSD : NULL \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 4NKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-13. \ REMARK 100 THE DEPOSITION ID IS D_1000083321. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 27-JUN-12 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 8.5 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : APS \ REMARK 200 BEAMLINE : 22-ID \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 \ REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR \ REMARK 200 HIGH-RESOLUTION DOUBLE-CRYSTAL \ REMARK 200 SI(220) SAGITTAL FOCUSING, \ REMARK 200 ROSENBAUM-ROCK VERTICAL FOCUSING \ REMARK 200 MIRROR \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 \ REMARK 200 DATA SCALING SOFTWARE : HKL-2000 \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11363 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 3.710 \ REMARK 200 RESOLUTION RANGE LOW (A) : 46.100 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 \ REMARK 200 DATA REDUNDANCY : NULL \ REMARK 200 R MERGE (I) : NULL \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 11.8500 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.71 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.84 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 82.2 \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : 0.22060 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : 4.300 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: PHASER \ REMARK 200 STARTING MODEL: PDB ENTRY 3NN8 \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 55.17 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF 3D5/EE_48.K (7.5MG/ML IN \ REMARK 280 HBS) WERE GROWN AT 4 C WITH 0.1M TRIS PH 8.5, 0.2M LI2(SO4), 3% \ REMARK 280 6-AMINOHEXANOIC ACID, 24% PEG 8000; CRYSTALS APPEARED IN 4-5 \ REMARK 280 DAYS, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y,-Z \ REMARK 290 3555 X+1/2,Y+1/2,Z \ REMARK 290 4555 -X+1/2,Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.63250 \ REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.12850 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.63250 \ REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.12850 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1, 2, 3, 4 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 11530 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: A \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 2 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1650 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 11570 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: B \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 3 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1640 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: C \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 350 \ REMARK 350 BIOMOLECULE: 4 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 1630 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 11530 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: D \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 MET A -4 \ REMARK 465 ALA A -3 \ REMARK 465 ASP A -2 \ REMARK 465 TYR A -1 \ REMARK 465 LYS A 0 \ REMARK 465 GLY A 116 \ REMARK 465 GLY A 117 \ REMARK 465 SER A 118 \ REMARK 465 GLY A 119 \ REMARK 465 GLY A 120 \ REMARK 465 GLY A 121 \ REMARK 465 GLY A 122 \ REMARK 465 SER A 123 \ REMARK 465 GLY A 124 \ REMARK 465 GLY A 125 \ REMARK 465 GLY A 126 \ REMARK 465 GLY A 127 \ REMARK 465 SER A 128 \ REMARK 465 SER A 129 \ REMARK 465 GLY A 130 \ REMARK 465 GLY A 131 \ REMARK 465 GLY A 132 \ REMARK 465 SER A 133 \ REMARK 465 SER A 255 \ REMARK 465 ALA A 256 \ REMARK 465 SER A 257 \ REMARK 465 GLY A 258 \ REMARK 465 ALA A 259 \ REMARK 465 ASP A 260 \ REMARK 465 HIS A 261 \ REMARK 465 HIS A 262 \ REMARK 465 HIS A 263 \ REMARK 465 HIS A 264 \ REMARK 465 HIS A 265 \ REMARK 465 HIS A 266 \ REMARK 465 MET B -4 \ REMARK 465 ALA B -3 \ REMARK 465 ASP B -2 \ REMARK 465 TYR B -1 \ REMARK 465 LYS B 0 \ REMARK 465 GLY B 116 \ REMARK 465 GLY B 117 \ REMARK 465 SER B 118 \ REMARK 465 GLY B 119 \ REMARK 465 GLY B 120 \ REMARK 465 GLY B 121 \ REMARK 465 GLY B 122 \ REMARK 465 SER B 123 \ REMARK 465 GLY B 124 \ REMARK 465 GLY B 125 \ REMARK 465 GLY B 126 \ REMARK 465 GLY B 127 \ REMARK 465 SER B 128 \ REMARK 465 SER B 129 \ REMARK 465 GLY B 130 \ REMARK 465 GLY B 131 \ REMARK 465 GLY B 132 \ REMARK 465 SER B 133 \ REMARK 465 SER B 255 \ REMARK 465 ALA B 256 \ REMARK 465 SER B 257 \ REMARK 465 GLY B 258 \ REMARK 465 ALA B 259 \ REMARK 465 ASP B 260 \ REMARK 465 HIS B 261 \ REMARK 465 HIS B 262 \ REMARK 465 HIS B 263 \ REMARK 465 HIS B 264 \ REMARK 465 HIS B 265 \ REMARK 465 HIS B 266 \ REMARK 465 MET C -4 \ REMARK 465 ALA C -3 \ REMARK 465 ASP C -2 \ REMARK 465 TYR C -1 \ REMARK 465 LYS C 0 \ REMARK 465 GLY C 116 \ REMARK 465 GLY C 117 \ REMARK 465 SER C 118 \ REMARK 465 GLY C 119 \ REMARK 465 GLY C 120 \ REMARK 465 GLY C 121 \ REMARK 465 GLY C 122 \ REMARK 465 SER C 123 \ REMARK 465 GLY C 124 \ REMARK 465 GLY C 125 \ REMARK 465 GLY C 126 \ REMARK 465 GLY C 127 \ REMARK 465 SER C 128 \ REMARK 465 SER C 129 \ REMARK 465 GLY C 130 \ REMARK 465 GLY C 131 \ REMARK 465 GLY C 132 \ REMARK 465 SER C 133 \ REMARK 465 SER C 255 \ REMARK 465 ALA C 256 \ REMARK 465 SER C 257 \ REMARK 465 GLY C 258 \ REMARK 465 ALA C 259 \ REMARK 465 ASP C 260 \ REMARK 465 HIS C 261 \ REMARK 465 HIS C 262 \ REMARK 465 HIS C 263 \ REMARK 465 HIS C 264 \ REMARK 465 HIS C 265 \ REMARK 465 HIS C 266 \ REMARK 465 MET D -4 \ REMARK 465 ALA D -3 \ REMARK 465 ASP D -2 \ REMARK 465 TYR D -1 \ REMARK 465 LYS D 0 \ REMARK 465 GLY D 116 \ REMARK 465 GLY D 117 \ REMARK 465 SER D 118 \ REMARK 465 GLY D 119 \ REMARK 465 GLY D 120 \ REMARK 465 GLY D 121 \ REMARK 465 GLY D 122 \ REMARK 465 SER D 123 \ REMARK 465 GLY D 124 \ REMARK 465 GLY D 125 \ REMARK 465 GLY D 126 \ REMARK 465 GLY D 127 \ REMARK 465 SER D 128 \ REMARK 465 SER D 129 \ REMARK 465 GLY D 130 \ REMARK 465 GLY D 131 \ REMARK 465 GLY D 132 \ REMARK 465 SER D 133 \ REMARK 465 SER D 255 \ REMARK 465 ALA D 256 \ REMARK 465 SER D 257 \ REMARK 465 GLY D 258 \ REMARK 465 ALA D 259 \ REMARK 465 ASP D 260 \ REMARK 465 HIS D 261 \ REMARK 465 HIS D 262 \ REMARK 465 HIS D 263 \ REMARK 465 HIS D 264 \ REMARK 465 HIS D 265 \ REMARK 465 HIS D 266 \ REMARK 470 \ REMARK 470 MISSING ATOM \ REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 470 I=INSERTION CODE): \ REMARK 470 M RES CSSEQI ATOMS \ REMARK 470 LEU A 98 CG CD1 CD2 \ REMARK 470 VAL A 99 CG1 CG2 \ REMARK 470 PRO A 100 CG CD \ REMARK 470 LEU B 98 CG CD1 CD2 \ REMARK 470 VAL B 99 CG1 CG2 \ REMARK 470 PRO B 100 CG CD \ REMARK 470 LEU C 98 CG CD1 CD2 \ REMARK 470 VAL C 99 CG1 CG2 \ REMARK 470 PRO C 100 CG CD \ REMARK 470 LEU D 98 CG CD1 CD2 \ REMARK 470 VAL D 99 CG1 CG2 \ REMARK 470 PRO D 100 CG CD \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 OG SER A 236 OD1 ASN B 35 2.12 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 PRO A 100 N - CA - CB ANGL. DEV. = 7.6 DEGREES \ REMARK 500 PRO B 100 N - CA - CB ANGL. DEV. = 7.7 DEGREES \ REMARK 500 PRO C 100 N - CA - CB ANGL. DEV. = 7.7 DEGREES \ REMARK 500 PRO D 100 N - CA - CB ANGL. DEV. = 7.7 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 THR A 7 170.00 69.63 \ REMARK 500 PRO A 8 79.26 -62.81 \ REMARK 500 ASN A 33 -4.77 89.56 \ REMARK 500 VAL A 56 -113.79 51.50 \ REMARK 500 SER A 97 -73.71 -97.77 \ REMARK 500 VAL A 99 -124.38 48.48 \ REMARK 500 LEU A 183 -70.07 -122.51 \ REMARK 500 ASP A 190 -1.87 78.25 \ REMARK 500 SER A 226 -178.23 -171.26 \ REMARK 500 THR B 7 171.39 70.14 \ REMARK 500 PRO B 8 80.63 -61.05 \ REMARK 500 ASN B 33 -4.81 89.37 \ REMARK 500 VAL B 56 -115.09 54.69 \ REMARK 500 SER B 97 -73.91 -100.21 \ REMARK 500 VAL B 99 -124.47 48.54 \ REMARK 500 LEU B 183 -71.62 -123.07 \ REMARK 500 ASP B 190 -1.72 77.60 \ REMARK 500 SER B 226 -178.75 -171.75 \ REMARK 500 THR C 7 170.82 70.09 \ REMARK 500 PRO C 8 80.29 -61.58 \ REMARK 500 ASN C 33 -4.65 90.92 \ REMARK 500 VAL C 56 -114.37 51.93 \ REMARK 500 SER C 97 -74.03 -100.61 \ REMARK 500 VAL C 99 -125.02 48.45 \ REMARK 500 LEU C 183 -72.27 -122.78 \ REMARK 500 ASP C 190 -1.47 77.61 \ REMARK 500 SER C 226 -178.14 -170.85 \ REMARK 500 THR D 7 171.21 70.49 \ REMARK 500 PRO D 8 79.54 -61.49 \ REMARK 500 ASN D 33 -4.78 89.81 \ REMARK 500 VAL D 56 -114.13 51.39 \ REMARK 500 SER D 97 -73.41 -100.73 \ REMARK 500 VAL D 99 -125.47 48.09 \ REMARK 500 LEU D 183 -72.53 -122.32 \ REMARK 500 ASP D 190 -1.69 78.45 \ REMARK 500 SER D 226 -177.87 -171.33 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 3NN8 RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF ENGINEERED ANTIBODY FRAGMENT BASED ON 3D5 \ REMARK 900 RELATED ID: 4NKD RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF ENGINEERED ANTI-EE SCFV ANTIBODY FRAGMENT \ REMARK 900 RELATED ID: 4NKO RELATED DB: PDB \ REMARK 900 CRYSTAL STRUCTURE OF ENGINEERED ANTI-EE SCFV ANTIBODY FRAGMENT \ DBREF 4NKM A -4 266 PDB 4NKM 4NKM -4 266 \ DBREF 4NKM B -4 266 PDB 4NKM 4NKM -4 266 \ DBREF 4NKM C -4 266 PDB 4NKM 4NKM -4 266 \ DBREF 4NKM D -4 266 PDB 4NKM 4NKM -4 266 \ SEQRES 1 A 271 MET ALA ASP TYR LYS ASP ILE VAL MET THR GLN THR PRO \ SEQRES 2 A 271 SER SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER ILE \ SEQRES 3 A 271 SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN GLY \ SEQRES 4 A 271 ASN THR TYR LEU GLU TRP TYR LEU GLN LYS PRO GLY GLN \ SEQRES 5 A 271 SER PRO LYS LEU LEU ILE TYR LYS VAL SER ASN ARG PHE \ SEQRES 6 A 271 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY \ SEQRES 7 A 271 THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU \ SEQRES 8 A 271 ASP LEU GLY ILE TYR TYR CYS PHE GLN GLY SER LEU VAL \ SEQRES 9 A 271 PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS \ SEQRES 10 A 271 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY \ SEQRES 11 A 271 GLY GLY SER SER GLY GLY GLY SER GLN VAL GLN LEU GLN \ SEQRES 12 A 271 GLN SER GLY PRO GLU ASP VAL LYS PRO GLY ALA SER VAL \ SEQRES 13 A 271 LYS ILE SER CYS LYS ALA SER GLY TYR SER LEU THR THR \ SEQRES 14 A 271 LYS GLY MET GLY VAL ASN TRP VAL LYS GLN SER PRO GLY \ SEQRES 15 A 271 LYS GLY LEU GLU TRP LEU ALA HIS ILE TYR TRP ASP ASP \ SEQRES 16 A 271 ASP LYS ARG TYR ASN PRO SER LEU LYS SER ARG ALA THR \ SEQRES 17 A 271 LEU THR VAL ASP LYS SER SER SER THR VAL TYR LEU GLU \ SEQRES 18 A 271 LEU ARG SER LEU THR SER GLU ASP SER SER VAL TYR TYR \ SEQRES 19 A 271 CYS ALA ARG ARG GLY GLY SER SER HIS TYR TYR ALA MET \ SEQRES 20 A 271 ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER \ SEQRES 21 A 271 ALA SER GLY ALA ASP HIS HIS HIS HIS HIS HIS \ SEQRES 1 B 271 MET ALA ASP TYR LYS ASP ILE VAL MET THR GLN THR PRO \ SEQRES 2 B 271 SER SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER ILE \ SEQRES 3 B 271 SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN GLY \ SEQRES 4 B 271 ASN THR TYR LEU GLU TRP TYR LEU GLN LYS PRO GLY GLN \ SEQRES 5 B 271 SER PRO LYS LEU LEU ILE TYR LYS VAL SER ASN ARG PHE \ SEQRES 6 B 271 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY \ SEQRES 7 B 271 THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU \ SEQRES 8 B 271 ASP LEU GLY ILE TYR TYR CYS PHE GLN GLY SER LEU VAL \ SEQRES 9 B 271 PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS \ SEQRES 10 B 271 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY \ SEQRES 11 B 271 GLY GLY SER SER GLY GLY GLY SER GLN VAL GLN LEU GLN \ SEQRES 12 B 271 GLN SER GLY PRO GLU ASP VAL LYS PRO GLY ALA SER VAL \ SEQRES 13 B 271 LYS ILE SER CYS LYS ALA SER GLY TYR SER LEU THR THR \ SEQRES 14 B 271 LYS GLY MET GLY VAL ASN TRP VAL LYS GLN SER PRO GLY \ SEQRES 15 B 271 LYS GLY LEU GLU TRP LEU ALA HIS ILE TYR TRP ASP ASP \ SEQRES 16 B 271 ASP LYS ARG TYR ASN PRO SER LEU LYS SER ARG ALA THR \ SEQRES 17 B 271 LEU THR VAL ASP LYS SER SER SER THR VAL TYR LEU GLU \ SEQRES 18 B 271 LEU ARG SER LEU THR SER GLU ASP SER SER VAL TYR TYR \ SEQRES 19 B 271 CYS ALA ARG ARG GLY GLY SER SER HIS TYR TYR ALA MET \ SEQRES 20 B 271 ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER \ SEQRES 21 B 271 ALA SER GLY ALA ASP HIS HIS HIS HIS HIS HIS \ SEQRES 1 C 271 MET ALA ASP TYR LYS ASP ILE VAL MET THR GLN THR PRO \ SEQRES 2 C 271 SER SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER ILE \ SEQRES 3 C 271 SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN GLY \ SEQRES 4 C 271 ASN THR TYR LEU GLU TRP TYR LEU GLN LYS PRO GLY GLN \ SEQRES 5 C 271 SER PRO LYS LEU LEU ILE TYR LYS VAL SER ASN ARG PHE \ SEQRES 6 C 271 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY \ SEQRES 7 C 271 THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU \ SEQRES 8 C 271 ASP LEU GLY ILE TYR TYR CYS PHE GLN GLY SER LEU VAL \ SEQRES 9 C 271 PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS \ SEQRES 10 C 271 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY \ SEQRES 11 C 271 GLY GLY SER SER GLY GLY GLY SER GLN VAL GLN LEU GLN \ SEQRES 12 C 271 GLN SER GLY PRO GLU ASP VAL LYS PRO GLY ALA SER VAL \ SEQRES 13 C 271 LYS ILE SER CYS LYS ALA SER GLY TYR SER LEU THR THR \ SEQRES 14 C 271 LYS GLY MET GLY VAL ASN TRP VAL LYS GLN SER PRO GLY \ SEQRES 15 C 271 LYS GLY LEU GLU TRP LEU ALA HIS ILE TYR TRP ASP ASP \ SEQRES 16 C 271 ASP LYS ARG TYR ASN PRO SER LEU LYS SER ARG ALA THR \ SEQRES 17 C 271 LEU THR VAL ASP LYS SER SER SER THR VAL TYR LEU GLU \ SEQRES 18 C 271 LEU ARG SER LEU THR SER GLU ASP SER SER VAL TYR TYR \ SEQRES 19 C 271 CYS ALA ARG ARG GLY GLY SER SER HIS TYR TYR ALA MET \ SEQRES 20 C 271 ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER \ SEQRES 21 C 271 ALA SER GLY ALA ASP HIS HIS HIS HIS HIS HIS \ SEQRES 1 D 271 MET ALA ASP TYR LYS ASP ILE VAL MET THR GLN THR PRO \ SEQRES 2 D 271 SER SER LEU PRO VAL SER LEU GLY ASP GLN ALA SER ILE \ SEQRES 3 D 271 SER CYS ARG SER SER GLN SER ILE VAL HIS SER ASN GLY \ SEQRES 4 D 271 ASN THR TYR LEU GLU TRP TYR LEU GLN LYS PRO GLY GLN \ SEQRES 5 D 271 SER PRO LYS LEU LEU ILE TYR LYS VAL SER ASN ARG PHE \ SEQRES 6 D 271 SER GLY VAL PRO ASP ARG PHE SER GLY SER GLY SER GLY \ SEQRES 7 D 271 THR ASP PHE THR LEU LYS ILE SER ARG VAL GLU ALA GLU \ SEQRES 8 D 271 ASP LEU GLY ILE TYR TYR CYS PHE GLN GLY SER LEU VAL \ SEQRES 9 D 271 PRO PRO THR PHE GLY ALA GLY THR LYS LEU GLU LEU LYS \ SEQRES 10 D 271 ARG GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY \ SEQRES 11 D 271 GLY GLY SER SER GLY GLY GLY SER GLN VAL GLN LEU GLN \ SEQRES 12 D 271 GLN SER GLY PRO GLU ASP VAL LYS PRO GLY ALA SER VAL \ SEQRES 13 D 271 LYS ILE SER CYS LYS ALA SER GLY TYR SER LEU THR THR \ SEQRES 14 D 271 LYS GLY MET GLY VAL ASN TRP VAL LYS GLN SER PRO GLY \ SEQRES 15 D 271 LYS GLY LEU GLU TRP LEU ALA HIS ILE TYR TRP ASP ASP \ SEQRES 16 D 271 ASP LYS ARG TYR ASN PRO SER LEU LYS SER ARG ALA THR \ SEQRES 17 D 271 LEU THR VAL ASP LYS SER SER SER THR VAL TYR LEU GLU \ SEQRES 18 D 271 LEU ARG SER LEU THR SER GLU ASP SER SER VAL TYR TYR \ SEQRES 19 D 271 CYS ALA ARG ARG GLY GLY SER SER HIS TYR TYR ALA MET \ SEQRES 20 D 271 ASP TYR TRP GLY GLN GLY THR THR VAL THR VAL SER SER \ SEQRES 21 D 271 ALA SER GLY ALA ASP HIS HIS HIS HIS HIS HIS \ HELIX 1 1 PRO A 196 LYS A 199 5 4 \ HELIX 2 2 THR A 221 SER A 225 5 5 \ HELIX 3 3 ASN B 195 LYS B 199 5 5 \ HELIX 4 4 THR B 221 SER B 225 5 5 \ HELIX 5 5 GLY B 235 TYR B 239 5 5 \ HELIX 6 6 ASN C 195 LYS C 199 5 5 \ HELIX 7 7 GLY C 235 TYR C 239 5 5 \ HELIX 8 8 ASN D 195 LYS D 199 5 5 \ HELIX 9 9 THR D 221 SER D 225 5 5 \ SHEET 1 A 4 GLN A 136 GLN A 139 0 \ SHEET 2 A 4 VAL A 151 SER A 158 -1 O LYS A 156 N GLN A 138 \ SHEET 3 A 4 THR A 212 LEU A 217 -1 O VAL A 213 N CYS A 155 \ SHEET 4 A 4 THR A 203 ASP A 207 -1 N THR A 205 O TYR A 214 \ SHEET 1 B 6 GLU A 143 VAL A 145 0 \ SHEET 2 B 6 THR A 249 VAL A 253 1 O THR A 250 N GLU A 143 \ SHEET 3 B 6 SER A 226 ARG A 233 -1 N TYR A 228 O THR A 249 \ SHEET 4 B 6 GLY A 168 SER A 175 -1 N VAL A 172 O TYR A 229 \ SHEET 5 B 6 GLY A 179 ILE A 186 -1 O ILE A 186 N VAL A 169 \ SHEET 6 B 6 LYS A 192 TYR A 194 -1 O ARG A 193 N HIS A 185 \ SHEET 1 C 4 GLU A 143 VAL A 145 0 \ SHEET 2 C 4 THR A 249 VAL A 253 1 O THR A 250 N GLU A 143 \ SHEET 3 C 4 SER A 226 ARG A 233 -1 N TYR A 228 O THR A 249 \ SHEET 4 C 4 MET A 242 TRP A 245 -1 O TYR A 244 N ARG A 232 \ SHEET 1 D 5 SER A 10 VAL A 13 0 \ SHEET 2 D 5 THR A 107 LEU A 111 1 O LYS A 108 N LEU A 11 \ SHEET 3 D 5 GLY A 89 GLN A 95 -1 N TYR A 91 O THR A 107 \ SHEET 4 D 5 LEU A 38 GLN A 43 -1 N GLU A 39 O PHE A 94 \ SHEET 5 D 5 LYS A 50 ILE A 53 -1 O LEU A 52 N TRP A 40 \ SHEET 1 E 4 SER A 10 VAL A 13 0 \ SHEET 2 E 4 THR A 107 LEU A 111 1 O LYS A 108 N LEU A 11 \ SHEET 3 E 4 GLY A 89 GLN A 95 -1 N TYR A 91 O THR A 107 \ SHEET 4 E 4 THR A 102 PHE A 103 -1 O THR A 102 N GLN A 95 \ SHEET 1 F 3 ALA A 19 ARG A 24 0 \ SHEET 2 F 3 ASP A 75 ILE A 80 -1 O ILE A 80 N ALA A 19 \ SHEET 3 F 3 SER A 68 GLY A 69 -1 N SER A 68 O LYS A 79 \ SHEET 1 G 4 GLN B 136 GLN B 139 0 \ SHEET 2 G 4 VAL B 151 SER B 158 -1 O LYS B 156 N GLN B 138 \ SHEET 3 G 4 THR B 212 LEU B 217 -1 O LEU B 217 N VAL B 151 \ SHEET 4 G 4 THR B 203 ASP B 207 -1 N THR B 205 O TYR B 214 \ SHEET 1 H 6 GLU B 143 VAL B 145 0 \ SHEET 2 H 6 THR B 249 VAL B 253 1 O THR B 250 N GLU B 143 \ SHEET 3 H 6 SER B 226 ARG B 233 -1 N SER B 226 O VAL B 251 \ SHEET 4 H 6 GLY B 168 SER B 175 -1 N VAL B 172 O TYR B 229 \ SHEET 5 H 6 GLY B 179 ILE B 186 -1 O ILE B 186 N VAL B 169 \ SHEET 6 H 6 LYS B 192 ARG B 193 -1 O ARG B 193 N HIS B 185 \ SHEET 1 I 4 GLU B 143 VAL B 145 0 \ SHEET 2 I 4 THR B 249 VAL B 253 1 O THR B 250 N GLU B 143 \ SHEET 3 I 4 SER B 226 ARG B 233 -1 N SER B 226 O VAL B 251 \ SHEET 4 I 4 MET B 242 TRP B 245 -1 O TYR B 244 N ARG B 232 \ SHEET 1 J 5 SER B 10 VAL B 13 0 \ SHEET 2 J 5 THR B 107 LEU B 111 1 O LYS B 108 N LEU B 11 \ SHEET 3 J 5 GLY B 89 GLN B 95 -1 N TYR B 91 O THR B 107 \ SHEET 4 J 5 LEU B 38 GLN B 43 -1 N GLU B 39 O PHE B 94 \ SHEET 5 J 5 LYS B 50 ILE B 53 -1 O LYS B 50 N LEU B 42 \ SHEET 1 K 4 SER B 10 VAL B 13 0 \ SHEET 2 K 4 THR B 107 LEU B 111 1 O LYS B 108 N LEU B 11 \ SHEET 3 K 4 GLY B 89 GLN B 95 -1 N TYR B 91 O THR B 107 \ SHEET 4 K 4 THR B 102 PHE B 103 -1 O THR B 102 N GLN B 95 \ SHEET 1 L 3 ALA B 19 ARG B 24 0 \ SHEET 2 L 3 ASP B 75 ILE B 80 -1 O ILE B 80 N ALA B 19 \ SHEET 3 L 3 SER B 68 GLY B 69 -1 N SER B 68 O LYS B 79 \ SHEET 1 M 4 GLN C 136 GLN C 139 0 \ SHEET 2 M 4 VAL C 151 SER C 158 -1 O LYS C 156 N GLN C 138 \ SHEET 3 M 4 THR C 212 LEU C 217 -1 O VAL C 213 N CYS C 155 \ SHEET 4 M 4 THR C 203 ASP C 207 -1 N THR C 205 O TYR C 214 \ SHEET 1 N 6 GLU C 143 VAL C 145 0 \ SHEET 2 N 6 THR C 249 VAL C 253 1 O THR C 250 N GLU C 143 \ SHEET 3 N 6 SER C 226 ARG C 233 -1 N SER C 226 O VAL C 251 \ SHEET 4 N 6 GLY C 168 GLN C 174 -1 N VAL C 172 O TYR C 229 \ SHEET 5 N 6 LEU C 180 ILE C 186 -1 O ILE C 186 N VAL C 169 \ SHEET 6 N 6 LYS C 192 ARG C 193 -1 O ARG C 193 N HIS C 185 \ SHEET 1 O 4 GLU C 143 VAL C 145 0 \ SHEET 2 O 4 THR C 249 VAL C 253 1 O THR C 250 N GLU C 143 \ SHEET 3 O 4 SER C 226 ARG C 233 -1 N SER C 226 O VAL C 251 \ SHEET 4 O 4 MET C 242 TRP C 245 -1 O TYR C 244 N ARG C 232 \ SHEET 1 P 5 SER C 10 VAL C 13 0 \ SHEET 2 P 5 THR C 107 LEU C 111 1 O LYS C 108 N LEU C 11 \ SHEET 3 P 5 GLY C 89 GLN C 95 -1 N TYR C 91 O THR C 107 \ SHEET 4 P 5 LEU C 38 GLN C 43 -1 N GLN C 43 O ILE C 90 \ SHEET 5 P 5 LYS C 50 ILE C 53 -1 O LYS C 50 N LEU C 42 \ SHEET 1 Q 3 ALA C 19 ARG C 24 0 \ SHEET 2 Q 3 ASP C 75 ILE C 80 -1 O ILE C 80 N ALA C 19 \ SHEET 3 Q 3 SER C 68 GLY C 69 -1 N SER C 68 O LYS C 79 \ SHEET 1 R 4 GLN D 136 GLN D 139 0 \ SHEET 2 R 4 VAL D 151 SER D 158 -1 O LYS D 156 N GLN D 138 \ SHEET 3 R 4 THR D 212 LEU D 217 -1 O LEU D 217 N VAL D 151 \ SHEET 4 R 4 THR D 203 ASP D 207 -1 N THR D 205 O TYR D 214 \ SHEET 1 S 6 GLU D 143 VAL D 145 0 \ SHEET 2 S 6 THR D 249 VAL D 253 1 O THR D 250 N GLU D 143 \ SHEET 3 S 6 SER D 226 ARG D 233 -1 N SER D 226 O VAL D 251 \ SHEET 4 S 6 GLY D 168 SER D 175 -1 N VAL D 172 O TYR D 229 \ SHEET 5 S 6 GLY D 179 ILE D 186 -1 O ILE D 186 N VAL D 169 \ SHEET 6 S 6 LYS D 192 ARG D 193 -1 O ARG D 193 N HIS D 185 \ SHEET 1 T 4 GLU D 143 VAL D 145 0 \ SHEET 2 T 4 THR D 249 VAL D 253 1 O THR D 250 N GLU D 143 \ SHEET 3 T 4 SER D 226 ARG D 233 -1 N SER D 226 O VAL D 251 \ SHEET 4 T 4 MET D 242 TRP D 245 -1 O TYR D 244 N ARG D 232 \ SHEET 1 U 5 SER D 10 VAL D 13 0 \ SHEET 2 U 5 THR D 107 LEU D 111 1 O LYS D 108 N LEU D 11 \ SHEET 3 U 5 GLY D 89 GLN D 95 -1 N TYR D 91 O THR D 107 \ SHEET 4 U 5 LEU D 38 GLN D 43 -1 N GLU D 39 O PHE D 94 \ SHEET 5 U 5 LYS D 50 ILE D 53 -1 O LYS D 50 N LEU D 42 \ SHEET 1 V 3 ALA D 19 ARG D 24 0 \ SHEET 2 V 3 ASP D 75 ILE D 80 -1 O ILE D 80 N ALA D 19 \ SHEET 3 V 3 SER D 68 GLY D 69 -1 N SER D 68 O LYS D 79 \ SSBOND 1 CYS A 23 CYS A 93 1555 1555 2.03 \ SSBOND 2 CYS A 155 CYS A 230 1555 1555 2.03 \ SSBOND 3 CYS B 23 CYS B 93 1555 1555 2.03 \ SSBOND 4 CYS B 155 CYS B 230 1555 1555 2.03 \ SSBOND 5 CYS C 23 CYS C 93 1555 1555 2.04 \ SSBOND 6 CYS C 155 CYS C 230 1555 1555 2.03 \ SSBOND 7 CYS D 23 CYS D 93 1555 1555 2.03 \ SSBOND 8 CYS D 155 CYS D 230 1555 1555 2.03 \ CRYST1 103.265 92.257 142.708 90.00 110.86 90.00 C 1 2 1 16 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.009684 0.000000 0.003689 0.00000 \ SCALE2 0.000000 0.010839 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.007499 0.00000 \ TER 1809 SER A 254 \ TER 3618 SER B 254 \ TER 5427 SER C 254 \ TER 7236 SER D 254 \ CONECT 161 715 \ CONECT 715 161 \ CONECT 1026 1622 \ CONECT 1622 1026 \ CONECT 1970 2524 \ CONECT 2524 1970 \ CONECT 2835 3431 \ CONECT 3431 2835 \ CONECT 3779 4333 \ CONECT 4333 3779 \ CONECT 4644 5240 \ CONECT 5240 4644 \ CONECT 5588 6142 \ CONECT 6142 5588 \ CONECT 6453 7049 \ CONECT 7049 6453 \ MASTER 502 0 0 9 96 0 0 6 7232 4 16 84 \ END \ """, "4nkmchainF") cmd.hide("all") cmd.color('grey70', "4nkmchainF") cmd.show('cartoon', "4nkmchainF") cmd.center("4nkmchainF", state=0, origin=1) cmd.zoom("4nkmchainF", animate=-1) cmd.select("e4nkmF1", "c. F & i. 1-115") cmd.color("red", "e4nkmF1") cmd.disable("e4nkmF1")