cmd.read_pdbstr("""\ HEADER IMMUNE SYSTEM 20-JUN-13 4LAR \ TITLE CRYSTAL STRUCTURE OF A THERAPEUTIC SINGLE CHAIN ANTIBODY IN COMPLEX \ TITLE 2 WITH AMPHETAMINE \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: SINGLE CHAIN ANTIBODY FRAGMENT SCFV6H4; \ COMPND 3 CHAIN: H; \ COMPND 4 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; \ SOURCE 3 ORGANISM_COMMON: MOUSE; \ SOURCE 4 ORGANISM_TAXID: 10090; \ SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; \ SOURCE 6 EXPRESSION_SYSTEM_COMMON: PICHIA PASTORIS; \ SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; \ SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; \ SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; \ SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPICZ-ALPHA \ KEYWDS METHAMPHETAMINE, ANTI-METHAMPHETAMINE ANTIBODY, THERAPEUTIC ANTIBODY, \ KEYWDS 2 SCFV, IMMUNE SYSTEM \ EXPDTA X-RAY DIFFRACTION \ AUTHOR R.CELICAL,K.GOKULAN,E.C.PETERSON,K.I.VARUGHESE \ REVDAT 5 16-OCT-24 4LAR 1 REMARK \ REVDAT 4 20-SEP-23 4LAR 1 HETSYN \ REVDAT 3 25-DEC-19 4LAR 1 TITLE COMPND SOURCE JRNL \ REVDAT 3 2 1 REMARK DBREF SEQRES HELIX \ REVDAT 3 3 1 SHEET SSBOND SITE ATOM \ REVDAT 2 17-JUL-19 4LAR 1 REMARK \ REVDAT 1 11-DEC-13 4LAR 0 \ JRNL AUTH E.C.PETERSON,R.CELIKEL,K.GOKULAN,K.I.VARUGHESE \ JRNL TITL STRUCTURAL CHARACTERIZATION OF A THERAPEUTIC \ JRNL TITL 2 ANTI-METHAMPHETAMINE ANTIBODY FRAGMENT: OLIGOMERIZATION AND \ JRNL TITL 3 BINDING OF ACTIVE METABOLITES. \ JRNL REF PLOS ONE V. 8 82690 2013 \ JRNL REFN ESSN 1932-6203 \ JRNL PMID 24349338 \ JRNL DOI 10.1371/JOURNAL.PONE.0082690 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.38 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.5.0109 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.03 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL \ REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 \ REMARK 3 NUMBER OF REFLECTIONS : 7560 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 \ REMARK 3 R VALUE (WORKING SET) : 0.215 \ REMARK 3 FREE R VALUE : 0.293 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 \ REMARK 3 FREE R VALUE TEST SET COUNT : 373 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.38 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 377 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.80 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 \ REMARK 3 BIN FREE R VALUE SET COUNT : 17 \ REMARK 3 BIN FREE R VALUE : 0.2970 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 1776 \ REMARK 3 NUCLEIC ACID ATOMS : 0 \ REMARK 3 HETEROGEN ATOMS : 10 \ REMARK 3 SOLVENT ATOMS : 55 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.95 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 2.89000 \ REMARK 3 B22 (A**2) : -2.06000 \ REMARK 3 B33 (A**2) : -0.76000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 0.24000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 1.531 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.359 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.266 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.164 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.832 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1835 ; 0.018 ; 0.022 \ REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2492 ; 1.865 ; 1.949 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 7.111 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 70 ;39.288 ;23.714 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 286 ;19.789 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;20.575 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 267 ; 0.109 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1386 ; 0.007 ; 0.021 \ REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1149 ; 0.851 ; 1.500 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1852 ; 1.588 ; 2.000 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 686 ; 2.186 ; 3.000 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 640 ; 3.333 ; 4.500 \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : MASK \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.40 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS \ REMARK 4 \ REMARK 4 4LAR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-13. \ REMARK 100 THE DEPOSITION ID IS D_1000080395. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 17-DEC-09 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 7.8 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : SSRL \ REMARK 200 BEAMLINE : BL9-2 \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : CCD \ REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 \ REMARK 200 DATA SCALING SOFTWARE : SCALEPACK \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7947 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 \ REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 93.3 \ REMARK 200 DATA REDUNDANCY : 4.400 \ REMARK 200 R MERGE (I) : 0.09300 \ REMARK 200 R SYM (I) : 0.04000 \ REMARK 200 FOR THE DATA SET : 24.9000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL \ REMARK 200 COMPLETENESS FOR SHELL (%) : NULL \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : NULL \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: CNS \ REMARK 200 STARTING MODEL: PDB ENTRY 3GK2 \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 42.56 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 1.15M SODIUM CITRATE, 0.28M IMIDAZOLE \ REMARK 280 -MALATE, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE \ REMARK 280 287.1K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y+1/2,-Z \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.61350 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 10750 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: H \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 GLY H 117A \ REMARK 465 GLY H 117B \ REMARK 465 GLY H 117C \ REMARK 465 GLY H 117D \ REMARK 465 SER H 117E \ REMARK 465 GLY H 117F \ REMARK 465 GLY H 117G \ REMARK 465 GLY H 117H \ REMARK 465 GLY H 117I \ REMARK 465 ALA H 233 \ REMARK 465 PRO H 234 \ REMARK 465 HIS H 235 \ REMARK 465 HIS H 236 \ REMARK 465 HIS H 237 \ REMARK 465 HIS H 238 \ REMARK 465 HIS H 239 \ REMARK 465 HIS H 240 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 OG SER H 96 O HOH H 401 2.04 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 SER H 15 -18.28 79.03 \ REMARK 500 SER H 31 179.14 176.72 \ REMARK 500 SER H 62 -9.70 -53.38 \ REMARK 500 LYS H 64 -75.95 17.15 \ REMARK 500 ASP H 72 72.71 -150.20 \ REMARK 500 ASN H 76 57.43 37.36 \ REMARK 500 GLU H 88 -13.40 -48.85 \ REMARK 500 ASP H 102 57.89 -115.87 \ REMARK 500 TYR H 103 -35.32 -32.78 \ REMARK 500 THR H 175 -43.15 69.04 \ REMARK 500 ALA H 208 179.80 175.89 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 800 \ REMARK 800 SITE \ REMARK 800 SITE_IDENTIFIER: AC1 \ REMARK 800 EVIDENCE_CODE: SOFTWARE \ REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1WE L 300 \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: 3GKZ RELATED DB: PDB \ REMARK 900 SINGLE CHAIN VARIABLE FRAGMENT \ REMARK 900 RELATED ID: 4LAQ RELATED DB: PDB \ REMARK 900 RELATED ID: 4LAS RELATED DB: PDB \ DBREF 4LAR H 1 240 PDB 4LAR 4LAR 1 240 \ SEQRES 1 H 249 GLU VAL GLN LEU GLN GLU SER GLY PRO SER LEU VAL LYS \ SEQRES 2 H 249 PRO SER GLN THR LEU SER LEU THR CYS SER VAL THR GLY \ SEQRES 3 H 249 ASP SER VAL THR SER GLY TYR TRP SER TRP ILE ARG GLN \ SEQRES 4 H 249 PHE PRO GLY ASN LYS LEU ASP TYR MET GLY TYR ILE SER \ SEQRES 5 H 249 TYR ARG GLY SER THR TYR TYR ASN PRO SER LEU LYS SER \ SEQRES 6 H 249 ARG ILE SER ILE THR ARG ASP THR SER LYS ASN GLN VAL \ SEQRES 7 H 249 TYR LEU GLN LEU LYS SER VAL SER SER GLU ASP THR ALA \ SEQRES 8 H 249 THR TYR TYR CYS SER TYR PHE ASP SER ASP ASP TYR ALA \ SEQRES 9 H 249 MET GLU TYR TRP GLY GLN GLY THR SER VAL THR VAL SER \ SEQRES 10 H 249 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY \ SEQRES 11 H 249 GLY SER GLN ILE VAL LEU THR GLN SER PRO ALA ILE MET \ SEQRES 12 H 249 SER ALA SER PRO GLY GLU LYS VAL THR LEU THR CYS SER \ SEQRES 13 H 249 ALA SER SER SER VAL SER SER SER HIS LEU TYR TRP TYR \ SEQRES 14 H 249 GLN GLN LYS PRO GLY SER SER PRO LYS LEU TRP ILE TYR \ SEQRES 15 H 249 SER THR SER ASN LEU ALA SER GLY VAL PRO ALA ARG PHE \ SEQRES 16 H 249 SER GLY SER GLY SER GLY THR SER TYR SER LEU THR ILE \ SEQRES 17 H 249 SER SER MET GLU ALA GLU ASP ALA ALA SER TYR PHE CYS \ SEQRES 18 H 249 HIS GLN TRP SER SER PHE PRO PHE THR PHE GLY SER GLY \ SEQRES 19 H 249 THR LYS LEU GLU ILE LYS ARG ALA PRO HIS HIS HIS HIS \ SEQRES 20 H 249 HIS HIS \ HET 1WE H 300 10 \ HETNAM 1WE (2S)-1-PHENYLPROPAN-2-AMINE \ HETSYN 1WE DEXTROAMPHETAMINE; D-AMPHETAMINE; DEXAMPHETAMINE; \ HETSYN 2 1WE DEXEDRINE; DEXTROSTAT \ FORMUL 2 1WE C9 H13 N \ FORMUL 3 HOH *55(H2 O) \ HELIX 1 1 PRO H 41 ASN H 43 5 3 \ HELIX 2 2 THR H 73 LYS H 75 5 3 \ HELIX 3 3 SER H 86 THR H 90 5 5 \ HELIX 4 4 SER H 153 SER H 155 5 3 \ HELIX 5 5 GLU H 203 ALA H 207 5 5 \ SHEET 1 A 4 VAL H 2 SER H 7 0 \ SHEET 2 A 4 LEU H 18 GLY H 26 -1 O THR H 25 N GLN H 3 \ SHEET 3 A 4 GLN H 77 LEU H 82 -1 O VAL H 78 N CYS H 22 \ SHEET 4 A 4 ILE H 67 ASP H 72 -1 N THR H 70 O TYR H 79 \ SHEET 1 B 6 LEU H 11 VAL H 12 0 \ SHEET 2 B 6 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 \ SHEET 3 B 6 ALA H 91 PHE H 98 -1 N TYR H 93 O THR H 112 \ SHEET 4 B 6 TYR H 33 GLN H 39 -1 N ILE H 37 O TYR H 94 \ SHEET 5 B 6 LEU H 45 SER H 52 -1 O ASP H 46 N ARG H 38 \ SHEET 6 B 6 THR H 57 TYR H 59 -1 O TYR H 58 N TYR H 50 \ SHEET 1 C 4 LEU H 11 VAL H 12 0 \ SHEET 2 C 4 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 \ SHEET 3 C 4 ALA H 91 PHE H 98 -1 N TYR H 93 O THR H 112 \ SHEET 4 C 4 GLU H 106 TRP H 108 -1 O TYR H 107 N TYR H 97 \ SHEET 1 D 4 LEU H 127 THR H 128 0 \ SHEET 2 D 4 VAL H 142 ALA H 148 -1 O SER H 147 N THR H 128 \ SHEET 3 D 4 SER H 194 ILE H 199 -1 O LEU H 197 N LEU H 144 \ SHEET 4 D 4 PHE H 186 SER H 191 -1 N SER H 189 O SER H 196 \ SHEET 1 E 6 ILE H 133 ALA H 136 0 \ SHEET 2 E 6 THR H 226 ILE H 230 1 O GLU H 229 N MET H 134 \ SHEET 3 E 6 ALA H 208 GLN H 214 -1 N ALA H 208 O LEU H 228 \ SHEET 4 E 6 LEU H 157 GLN H 162 -1 N GLN H 162 O SER H 209 \ SHEET 5 E 6 LYS H 169 TYR H 173 -1 O TRP H 171 N TRP H 159 \ SHEET 6 E 6 ASN H 177 LEU H 178 -1 O ASN H 177 N TYR H 173 \ SHEET 1 F 4 ILE H 133 ALA H 136 0 \ SHEET 2 F 4 THR H 226 ILE H 230 1 O GLU H 229 N MET H 134 \ SHEET 3 F 4 ALA H 208 GLN H 214 -1 N ALA H 208 O LEU H 228 \ SHEET 4 F 4 THR H 221 PHE H 222 -1 O THR H 221 N GLN H 214 \ SSBOND 1 CYS H 22 CYS H 95 1555 1555 2.10 \ SSBOND 2 CYS H 146 CYS H 212 1555 1555 2.07 \ CISPEP 1 SER H 130 PRO H 131 0 5.64 \ CISPEP 2 PHE H 218 PRO H 219 0 -6.58 \ SITE 1 AC1 5 TYR H 33 SER H 35 GLU H 106 HIS H 213 \ SITE 2 AC1 5 TRP H 215 \ CRYST1 34.545 65.227 48.593 90.00 98.70 90.00 P 1 21 1 2 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.028948 0.000000 0.004430 0.00000 \ SCALE2 0.000000 0.015331 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.020819 0.00000 \ TER 1777 ARG H 232 \ CONECT 162 753 \ CONECT 753 162 \ CONECT 1120 1609 \ CONECT 1609 1120 \ CONECT 1778 1779 \ CONECT 1779 1778 1780 1781 \ CONECT 1780 1779 \ CONECT 1781 1779 1782 \ CONECT 1782 1781 1783 1784 \ CONECT 1783 1782 1785 \ CONECT 1784 1782 1786 \ CONECT 1785 1783 1787 \ CONECT 1786 1784 1787 \ CONECT 1787 1785 1786 \ MASTER 305 0 1 5 28 0 2 6 1841 1 14 20 \ END \ """, "4larchainL") cmd.hide("all") cmd.color('grey70', "4larchainL") cmd.show('cartoon', "4larchainL") cmd.center("4larchainL", state=0, origin=1) cmd.zoom("4larchainL", animate=-1) cmd.select("e4larL1", "c. L & i. 1F-107") cmd.color("red", "e4larL1") cmd.disable("e4larL1")