cmd.read_pdbstr("""\ HEADER HYDROLASE/DNA 09-OCT-17 6EO7 \ TITLE X-RAY STRUCTURE OF THE COMPLEX BETWEEN HUMAN ALPHA-THROMBIN AND \ TITLE 2 MODIFIED 15-MER DNA APTAMER CONTAINING 5-(3-(ACETAMIDE-N-YL)-1- \ TITLE 3 PROPEN-1-YL)-2'-DEOXYURIDINE RESIDUE \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: GA68B2 - MODIFIED HUMAN THROMBIN BINDING APTAMER; \ COMPND 3 CHAIN: D; \ COMPND 4 ENGINEERED: YES; \ COMPND 5 OTHER_DETAILS: THROMBIN-SPECIFIC 15-MER DNA APTAMER CONTAINING 5-(3- \ COMPND 6 (ACETAMIDE-N-YL)-1-PROPEN-1-YL)-2'-DEOXYURIDINE RESIDUE; \ COMPND 7 MOL_ID: 2; \ COMPND 8 MOLECULE: PROTHROMBIN; \ COMPND 9 CHAIN: L; \ COMPND 10 SYNONYM: COAGULATION FACTOR II; \ COMPND 11 EC: 3.4.21.5; \ COMPND 12 MOL_ID: 3; \ COMPND 13 MOLECULE: PROTHROMBIN; \ COMPND 14 CHAIN: H; \ COMPND 15 SYNONYM: COAGULATION FACTOR II; \ COMPND 16 EC: 3.4.21.5 \ SOURCE MOL_ID: 1; \ SOURCE 2 SYNTHETIC: YES; \ SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; \ SOURCE 4 ORGANISM_TAXID: 32630; \ SOURCE 5 MOL_ID: 2; \ SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 7 ORGANISM_COMMON: HUMAN; \ SOURCE 8 ORGANISM_TAXID: 9606; \ SOURCE 9 MOL_ID: 3; \ SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 11 ORGANISM_COMMON: HUMAN; \ SOURCE 12 ORGANISM_TAXID: 9606 \ KEYWDS ALPHA THROMBIN, APTAMER, THROMBIN-MTBA, COMPLEX, HYDROLASE-DNA \ KEYWDS 2 COMPLEX, HYDROLASE \ EXPDTA X-RAY DIFFRACTION \ AUTHOR R.M.DOLOT,B.NAWROT,X.YANG \ REVDAT 8 13-NOV-24 6EO7 1 REMARK \ REVDAT 7 17-JAN-24 6EO7 1 HETSYN \ REVDAT 6 29-JUL-20 6EO7 1 COMPND REMARK HETNAM LINK \ REVDAT 6 2 1 SITE \ REVDAT 5 20-FEB-19 6EO7 1 SOURCE \ REVDAT 4 19-DEC-18 6EO7 1 CAVEAT REMARK LINK SITE \ REVDAT 3 18-JUL-18 6EO7 1 JRNL \ REVDAT 2 20-JUN-18 6EO7 1 REMARK \ REVDAT 1 18-OCT-17 6EO7 0 \ SPRSDE 18-OCT-17 6EO7 5LUY \ JRNL AUTH R.DOLOT,C.H.LAM,M.SIERANT,Q.ZHAO,F.W.LIU,B.NAWROT,M.EGLI, \ JRNL AUTH 2 X.YANG \ JRNL TITL CRYSTAL STRUCTURES OF THROMBIN IN COMPLEX WITH CHEMICALLY \ JRNL TITL 2 MODIFIED THROMBIN DNA APTAMERS REVEAL THE ORIGINS OF \ JRNL TITL 3 ENHANCED AFFINITY. \ JRNL REF NUCLEIC ACIDS RES. V. 46 4819 2018 \ JRNL REFN ESSN 1362-4962 \ JRNL PMID 29684204 \ JRNL DOI 10.1093/NAR/GKY268 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.24 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.8.0158 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 81.91 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL \ REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 \ REMARK 3 NUMBER OF REFLECTIONS : 28729 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 \ REMARK 3 R VALUE (WORKING SET) : 0.161 \ REMARK 3 FREE R VALUE : 0.208 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 \ REMARK 3 FREE R VALUE TEST SET COUNT : 1583 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 1554 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.82 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.2840 \ REMARK 3 BIN FREE R VALUE SET COUNT : 108 \ REMARK 3 BIN FREE R VALUE : 0.2810 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 2336 \ REMARK 3 NUCLEIC ACID ATOMS : 321 \ REMARK 3 HETEROGEN ATOMS : 46 \ REMARK 3 SOLVENT ATOMS : 232 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.27 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : 1.13000 \ REMARK 3 B22 (A**2) : 1.13000 \ REMARK 3 B33 (A**2) : -3.66000 \ REMARK 3 B12 (A**2) : 0.56000 \ REMARK 3 B13 (A**2) : 0.00000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 0.157 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.910 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2868 ; 0.020 ; 0.018 \ REMARK 3 BOND LENGTHS OTHERS (A): 2505 ; 0.003 ; 0.020 \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3939 ; 2.306 ; 1.878 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): 5825 ; 1.231 ; 3.000 \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 6.920 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;35.734 ;23.305 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 445 ;17.773 ;15.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.240 ;15.000 \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 394 ; 0.114 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2977 ; 0.011 ; 0.021 \ REMARK 3 GENERAL PLANES OTHERS (A): 614 ; 0.002 ; 0.020 \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1187 ; 4.807 ; 4.026 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1186 ; 4.767 ; 4.012 \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1489 ; 7.471 ; 5.992 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1490 ; 7.490 ; 6.006 \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1681 ; 5.622 ; 4.705 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1682 ; 5.620 ; 4.707 \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2449 ; 8.448 ; 6.848 \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3417 ;11.147 ;44.858 \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3382 ;11.180 ;44.635 \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : MASK \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING \ REMARK 3 POSITIONS \ REMARK 4 \ REMARK 4 6EO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-17. \ REMARK 100 THE DEPOSITION ID IS D_1200006959. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 29-APR-16 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : NULL \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : BESSY \ REMARK 200 BEAMLINE : 14.1 \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 \ REMARK 200 MONOCHROMATOR : NULL \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : PIXEL \ REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS \ REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.25 \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30342 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 \ REMARK 200 RESOLUTION RANGE LOW (A) : 47.290 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 95.4 \ REMARK 200 DATA REDUNDANCY : 7.000 \ REMARK 200 R MERGE (I) : 0.09100 \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 15.3000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 73.4 \ REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 \ REMARK 200 R MERGE FOR SHELL (I) : 0.70200 \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : 1.700 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: MOLREP 11.4.05 \ REMARK 200 STARTING MODEL: 1HAO \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 70.65 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.19 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PEG4000, 24% V/V 2-PROPANOL, \ REMARK 280 0.2 M SODIUM CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE \ REMARK 280 281K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -Y,X-Y,Z+2/3 \ REMARK 290 3555 -X+Y,-X,Z+1/3 \ REMARK 290 4555 Y,X,-Z \ REMARK 290 5555 X-Y,-Y,-Z+1/3 \ REMARK 290 6555 -X,-X+Y,-Z+2/3 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.71067 \ REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.85533 \ REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.85533 \ REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 \ REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 \ REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 83.71067 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 4060 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 15130 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, L, H \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 THR L 328 \ REMARK 465 PHE L 329 \ REMARK 465 GLY L 330 \ REMARK 465 SER L 331 \ REMARK 465 GLY L 362 \ REMARK 465 ARG L 363 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 OD1 ASN H 416 C1 NAG H 703 1.49 \ REMARK 500 ND2 ASN H 416 O5 NAG H 703 1.49 \ REMARK 500 CG ASN H 416 C1 NAG H 703 1.56 \ REMARK 500 OG SER H 568 C2 0G6 H 701 1.74 \ REMARK 500 O GLU L 333 O HOH L 401 1.78 \ REMARK 500 CE1 HIS H 406 C3 0G6 H 701 1.82 \ REMARK 500 CG ASN H 416 O5 NAG H 703 2.16 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION \ REMARK 500 8DT D 404 O3' DG D 405 P -0.125 \ REMARK 500 SER H 375 CB SER H 375 OG -0.080 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 DT D 403 C3' - O3' - P ANGL. DEV. = 7.9 DEGREES \ REMARK 500 8DT D 404 O3' - P - OP1 ANGL. DEV. = 13.2 DEGREES \ REMARK 500 8DT D 404 C3' - O3' - P ANGL. DEV. = 10.9 DEGREES \ REMARK 500 DG D 405 O3' - P - OP1 ANGL. DEV. = -17.7 DEGREES \ REMARK 500 DG D 405 O5' - P - OP2 ANGL. DEV. = 9.8 DEGREES \ REMARK 500 DG D 410 O5' - P - OP1 ANGL. DEV. = -5.6 DEGREES \ REMARK 500 ARG H 399 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES \ REMARK 500 ARG H 436 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES \ REMARK 500 ARG H 436 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES \ REMARK 500 ARG H 461 NE - CZ - NH1 ANGL. DEV. = 5.8 DEGREES \ REMARK 500 ARG H 461 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES \ REMARK 500 MET H 574 CG - SD - CE ANGL. DEV. = -9.8 DEGREES \ REMARK 500 ARG H 581 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES \ REMARK 500 ARG H 581 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES \ REMARK 500 ARG H 608 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 GLU L 333 -76.87 -169.34 \ REMARK 500 ALA L 334 75.57 -109.14 \ REMARK 500 PHE L 342 -90.06 -129.62 \ REMARK 500 ILE L 360 -74.13 -84.00 \ REMARK 500 SER H 397 -163.37 -160.11 \ REMARK 500 TYR H 410 89.60 -151.92 \ REMARK 500 ASN H 416 77.08 -155.53 \ REMARK 500 HIS H 429 -60.18 -129.84 \ REMARK 500 GLU H 457 -73.40 -99.88 \ REMARK 500 ALA H 513 -52.76 60.35 \ REMARK 500 PHE H 620 32.63 -97.71 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 525 \ REMARK 525 SOLVENT \ REMARK 525 \ REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT \ REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST \ REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT \ REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE \ REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; \ REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE \ REMARK 525 NUMBER; I=INSERTION CODE): \ REMARK 525 \ REMARK 525 M RES CSSEQI \ REMARK 525 HOH L 419 DISTANCE = 6.94 ANGSTROMS \ REMARK 610 \ REMARK 610 MISSING HETEROATOM \ REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; \ REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; \ REMARK 610 I=INSERTION CODE): \ REMARK 610 M RES C SSEQI \ REMARK 610 0G6 H 701 \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 K D 501 K \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 DG D 401 O6 \ REMARK 620 2 DG D 402 O6 66.3 \ REMARK 620 3 DG D 405 O6 123.9 74.5 \ REMARK 620 4 DG D 406 O6 73.1 98.0 74.6 \ REMARK 620 5 DG D 410 O6 115.2 167.7 95.9 71.6 \ REMARK 620 6 DG D 411 O6 168.9 112.6 64.3 117.7 68.5 \ REMARK 620 7 DG D 414 O6 97.7 71.2 106.0 168.3 119.6 72.0 \ REMARK 620 8 DG D 415 O6 72.3 119.6 163.3 109.8 71.2 100.3 73.2 \ REMARK 620 N 1 2 3 4 5 6 7 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 NA H 702 NA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ARG H 596 O \ REMARK 620 2 LYS H 599 O 91.1 \ REMARK 620 3 HOH H 823 O 102.0 165.7 \ REMARK 620 4 HOH H 840 O 157.9 69.3 98.7 \ REMARK 620 5 HOH H 852 O 88.1 93.0 93.1 83.0 \ REMARK 620 6 HOH H 918 O 93.6 79.3 94.0 92.6 172.1 \ REMARK 620 N 1 2 3 4 5 \ REMARK 630 \ REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR \ REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] \ REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE \ REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 630 \ REMARK 630 M RES C SSSEQI \ REMARK 630 0G6 H 701 \ REMARK 630 SOURCE: NULL \ REMARK 630 TAXONOMY: NULL \ REMARK 630 SUBCOMP: DPN PRO AR7 0QE \ REMARK 630 DETAILS: NULL \ DBREF 6EO7 D 401 415 PDB 6EO7 6EO7 401 415 \ DBREF 6EO7 L 328 363 UNP P00734 THRB_HUMAN 328 363 \ DBREF 6EO7 H 364 622 UNP P00734 THRB_HUMAN 364 622 \ SEQRES 1 D 15 DG DG DT 8DT DG DG DT DG DT DG DG DT DT \ SEQRES 2 D 15 DG DG \ SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO \ SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG \ SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG \ SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO \ SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU \ SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU \ SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS \ SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS \ SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE \ SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN \ SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS \ SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO \ SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU \ SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN \ SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN \ SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU \ SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR \ SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY \ SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO \ SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN \ SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP \ SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS \ SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU \ HET 8DT D 404 26 \ HET K D 501 1 \ HET 0G6 H 701 30 \ HET NA H 702 1 \ HET NAG H 703 14 \ HETNAM 8DT 5-(3-(ACETAMIDE-N-YL)-1-PROPEN-1-YL)-2'-DEOXYURIDINE \ HETNAM K POTASSIUM ION \ HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) \ HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- \ HETNAM 3 0G6 PROLINAMIDE \ HETNAM NA SODIUM ION \ HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE \ HETSYN 0G6 PPACK \ HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- \ HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- \ HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE \ FORMUL 1 8DT C14 H20 N3 O9 P \ FORMUL 4 K K 1+ \ FORMUL 5 0G6 C21 H34 CL N6 O3 1+ \ FORMUL 6 NA NA 1+ \ FORMUL 7 NAG C8 H15 N O6 \ FORMUL 8 HOH *232(H2 O) \ HELIX 1 AA1 PHE L 342 SER L 346 5 5 \ HELIX 2 AA2 THR L 351 ASP L 361 1 11 \ HELIX 3 AA3 ALA H 404 CYS H 407 5 4 \ HELIX 4 AA4 PRO H 411 ASP H 414 5 4 \ HELIX 5 AA5 THR H 418 ASN H 420 5 3 \ HELIX 6 AA6 ASP H 485 LEU H 493 1 9 \ HELIX 7 AA7 GLU H 532 SER H 539 1 8 \ HELIX 8 AA8 LEU H 609 PHE H 620 1 12 \ SHEET 1 AA1 7 SER H 368 ASP H 369 0 \ SHEET 2 AA1 7 GLN H 524 PRO H 529 -1 O VAL H 525 N SER H 368 \ SHEET 3 AA1 7 LYS H 498 GLY H 503 -1 N VAL H 501 O VAL H 526 \ SHEET 4 AA1 7 PRO H 571 LYS H 575 -1 O VAL H 573 N ARG H 500 \ SHEET 5 AA1 7 TRP H 582 TRP H 590 -1 O TYR H 583 N MET H 574 \ SHEET 6 AA1 7 GLY H 601 HIS H 605 -1 O PHE H 602 N TRP H 590 \ SHEET 7 AA1 7 MET H 548 ALA H 551 -1 N PHE H 549 O TYR H 603 \ SHEET 1 AA2 7 GLN H 378 ARG H 383 0 \ SHEET 2 AA2 7 GLU H 388 LEU H 395 -1 O GLU H 388 N ARG H 383 \ SHEET 3 AA2 7 TRP H 400 THR H 403 -1 O LEU H 402 N SER H 394 \ SHEET 4 AA2 7 ALA H 464 LEU H 468 -1 O MET H 466 N VAL H 401 \ SHEET 5 AA2 7 LYS H 440 ILE H 449 -1 N GLU H 445 O LYS H 467 \ SHEET 6 AA2 7 LEU H 422 ILE H 426 -1 N ILE H 426 O LYS H 440 \ SHEET 7 AA2 7 GLN H 378 ARG H 383 -1 N MET H 380 O ARG H 425 \ SHEET 1 AA3 2 LEU H 409 TYR H 410 0 \ SHEET 2 AA3 2 LYS H 415 ASN H 416 -1 O LYS H 415 N TYR H 410 \ SSBOND 1 CYS L 336 CYS H 482 1555 1555 2.13 \ SSBOND 2 CYS H 391 CYS H 407 1555 1555 2.14 \ SSBOND 3 CYS H 536 CYS H 550 1555 1555 2.09 \ SSBOND 4 CYS H 564 CYS H 594 1555 1555 2.14 \ LINK O3' DT D 403 P 8DT D 404 1555 1555 1.54 \ LINK O3' 8DT D 404 P DG D 405 1555 1555 1.48 \ LINK ND2 ASN H 416 C1 NAG H 703 1555 1555 1.35 \ LINK O6 DG D 401 K K D 501 1555 1555 2.80 \ LINK O6 DG D 402 K K D 501 1555 1555 2.68 \ LINK O6 DG D 405 K K D 501 1555 1555 2.76 \ LINK O6 DG D 406 K K D 501 1555 1555 2.84 \ LINK O6 DG D 410 K K D 501 1555 1555 2.57 \ LINK O6 DG D 411 K K D 501 1555 1555 2.86 \ LINK O6 DG D 414 K K D 501 1555 1555 2.75 \ LINK O6 DG D 415 K K D 501 1555 1555 2.84 \ LINK O ARG H 596 NA NA H 702 1555 1555 2.51 \ LINK O LYS H 599 NA NA H 702 1555 1555 2.35 \ LINK NA NA H 702 O HOH H 823 1555 1555 2.38 \ LINK NA NA H 702 O HOH H 840 1555 1555 2.41 \ LINK NA NA H 702 O HOH H 852 1555 1555 2.71 \ LINK NA NA H 702 O HOH H 918 1555 1555 2.43 \ CISPEP 1 SER H 385 PRO H 386 0 -7.08 \ CRYST1 94.579 94.579 125.566 90.00 90.00 120.00 P 32 2 1 6 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.010573 0.006104 0.000000 0.00000 \ SCALE2 0.000000 0.012209 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.007964 0.00000 \ TER 322 DG D 415 \ ATOM 323 N GLY L 332 44.986 -17.551 45.365 1.00 66.38 N \ ATOM 324 CA GLY L 332 45.028 -18.884 44.660 1.00 75.93 C \ ATOM 325 C GLY L 332 44.113 -19.948 45.318 1.00 88.06 C \ ATOM 326 O GLY L 332 44.314 -20.347 46.554 1.00 70.62 O \ ATOM 327 N GLU L 333 43.133 -20.374 44.492 1.00 75.43 N \ ATOM 328 CA GLU L 333 42.036 -21.345 44.802 1.00100.28 C \ ATOM 329 C GLU L 333 41.266 -21.773 43.474 1.00123.75 C \ ATOM 330 O GLU L 333 41.504 -22.891 42.974 1.00149.19 O \ ATOM 331 CB GLU L 333 41.038 -20.833 45.891 1.00 98.97 C \ ATOM 332 CG GLU L 333 40.560 -21.945 46.849 1.00110.72 C \ ATOM 333 CD GLU L 333 39.071 -21.904 47.238 1.00118.43 C \ ATOM 334 OE1 GLU L 333 38.771 -21.651 48.435 1.00123.49 O \ ATOM 335 OE2 GLU L 333 38.196 -22.175 46.370 1.00105.81 O \ ATOM 336 N ALA L 334 40.368 -20.923 42.910 1.00100.10 N \ ATOM 337 CA ALA L 334 39.829 -21.103 41.527 1.00 72.86 C \ ATOM 338 C ALA L 334 40.486 -19.970 40.745 1.00 58.32 C \ ATOM 339 O ALA L 334 39.917 -18.910 40.511 1.00 38.21 O \ ATOM 340 CB ALA L 334 38.318 -21.027 41.465 1.00 64.51 C \ ATOM 341 N ASP L 335 41.771 -20.172 40.451 1.00 43.89 N \ ATOM 342 CA ASP L 335 42.491 -19.228 39.627 1.00 37.42 C \ ATOM 343 C ASP L 335 42.643 -19.854 38.195 1.00 32.93 C \ ATOM 344 O ASP L 335 43.586 -19.499 37.492 1.00 31.38 O \ ATOM 345 CB ASP L 335 43.817 -18.783 40.302 1.00 35.32 C \ ATOM 346 CG ASP L 335 44.755 -19.949 40.510 1.00 38.14 C \ ATOM 347 OD1 ASP L 335 44.229 -21.103 40.543 1.00 39.93 O \ ATOM 348 OD2 ASP L 335 45.988 -19.739 40.584 1.00 34.07 O \ ATOM 349 N CYS L 336 41.664 -20.675 37.755 1.00 29.14 N \ ATOM 350 CA CYS L 336 41.576 -21.157 36.357 1.00 32.51 C \ ATOM 351 C CYS L 336 41.819 -20.020 35.379 1.00 29.26 C \ ATOM 352 O CYS L 336 41.350 -18.897 35.546 1.00 29.06 O \ ATOM 353 CB CYS L 336 40.265 -21.915 35.966 1.00 33.62 C \ ATOM 354 SG CYS L 336 38.881 -20.766 35.714 1.00 50.66 S \ ATOM 355 N GLY L 337 42.618 -20.309 34.376 1.00 26.18 N \ ATOM 356 CA GLY L 337 42.724 -19.404 33.255 1.00 28.69 C \ ATOM 357 C GLY L 337 43.543 -18.201 33.534 1.00 27.79 C \ ATOM 358 O GLY L 337 43.498 -17.238 32.748 1.00 27.69 O \ ATOM 359 N LEU L 338 44.317 -18.227 34.616 1.00 30.71 N \ ATOM 360 CA LEU L 338 45.278 -17.124 34.871 1.00 29.13 C \ ATOM 361 C LEU L 338 46.663 -17.717 34.918 1.00 29.21 C \ ATOM 362 O LEU L 338 46.974 -18.500 35.799 1.00 30.69 O \ ATOM 363 CB LEU L 338 44.947 -16.464 36.203 1.00 30.82 C \ ATOM 364 CG LEU L 338 43.606 -15.753 36.324 1.00 35.63 C \ ATOM 365 CD1 LEU L 338 43.203 -15.480 37.786 1.00 37.02 C \ ATOM 366 CD2 LEU L 338 43.614 -14.423 35.586 1.00 35.77 C \ ATOM 367 N ARG L 339 47.532 -17.320 34.006 1.00 29.94 N \ ATOM 368 CA ARG L 339 48.794 -17.997 33.876 1.00 29.27 C \ ATOM 369 C ARG L 339 49.793 -17.503 34.920 1.00 29.83 C \ ATOM 370 O ARG L 339 49.978 -16.327 35.035 1.00 27.44 O \ ATOM 371 CB ARG L 339 49.367 -17.783 32.477 1.00 29.12 C \ ATOM 372 CG ARG L 339 48.384 -18.268 31.378 1.00 31.34 C \ ATOM 373 CD ARG L 339 48.788 -17.900 29.995 1.00 28.70 C \ ATOM 374 NE ARG L 339 48.634 -16.508 29.782 1.00 28.86 N \ ATOM 375 CZ ARG L 339 49.016 -15.845 28.703 1.00 29.60 C \ ATOM 376 NH1 ARG L 339 49.564 -16.483 27.696 1.00 29.43 N \ ATOM 377 NH2 ARG L 339 48.859 -14.520 28.647 1.00 30.03 N \ ATOM 378 N PRO L 340 50.497 -18.412 35.594 1.00 28.01 N \ ATOM 379 CA PRO L 340 51.518 -18.023 36.512 1.00 30.16 C \ ATOM 380 C PRO L 340 52.575 -17.128 35.904 1.00 37.81 C \ ATOM 381 O PRO L 340 52.980 -16.223 36.590 1.00 36.80 O \ ATOM 382 CB PRO L 340 52.167 -19.347 36.887 1.00 29.50 C \ ATOM 383 CG PRO L 340 51.036 -20.308 36.854 1.00 30.45 C \ ATOM 384 CD PRO L 340 50.208 -19.853 35.683 1.00 29.08 C \ ATOM 385 N LEU L 341 53.039 -17.359 34.663 1.00 34.11 N \ ATOM 386 CA LEU L 341 54.074 -16.514 34.086 1.00 30.11 C \ ATOM 387 C LEU L 341 53.589 -15.269 33.348 1.00 31.80 C \ ATOM 388 O LEU L 341 54.397 -14.472 32.826 1.00 31.49 O \ ATOM 389 CB LEU L 341 54.951 -17.306 33.167 1.00 31.43 C \ ATOM 390 CG LEU L 341 55.718 -18.370 33.891 1.00 36.90 C \ ATOM 391 CD1 LEU L 341 56.624 -19.151 32.919 1.00 35.38 C \ ATOM 392 CD2 LEU L 341 56.616 -17.741 34.964 1.00 37.76 C \ ATOM 393 N PHE L 342 52.282 -15.046 33.327 1.00 31.61 N \ ATOM 394 CA PHE L 342 51.745 -13.909 32.605 1.00 32.92 C \ ATOM 395 C PHE L 342 50.787 -13.088 33.470 1.00 33.57 C \ ATOM 396 O PHE L 342 51.218 -12.197 34.150 1.00 34.07 O \ ATOM 397 CB PHE L 342 51.173 -14.376 31.227 1.00 34.18 C \ ATOM 398 CG PHE L 342 52.267 -14.762 30.281 1.00 29.58 C \ ATOM 399 CD1 PHE L 342 52.947 -13.779 29.581 1.00 29.95 C \ ATOM 400 CD2 PHE L 342 52.718 -16.092 30.213 1.00 31.78 C \ ATOM 401 CE1 PHE L 342 54.037 -14.094 28.787 1.00 32.40 C \ ATOM 402 CE2 PHE L 342 53.780 -16.446 29.379 1.00 33.73 C \ ATOM 403 CZ PHE L 342 54.456 -15.430 28.690 1.00 38.66 C \ ATOM 404 N GLU L 343 49.521 -13.387 33.468 1.00 32.24 N \ ATOM 405 CA GLU L 343 48.565 -12.568 34.210 1.00 32.36 C \ ATOM 406 C GLU L 343 49.047 -12.428 35.680 1.00 34.41 C \ ATOM 407 O GLU L 343 48.975 -11.311 36.205 1.00 30.94 O \ ATOM 408 CB GLU L 343 47.170 -13.186 34.216 1.00 30.55 C \ ATOM 409 CG GLU L 343 46.401 -13.200 32.897 1.00 33.73 C \ ATOM 410 CD GLU L 343 47.013 -14.077 31.806 1.00 34.45 C \ ATOM 411 OE1 GLU L 343 46.896 -13.684 30.616 1.00 34.25 O \ ATOM 412 OE2 GLU L 343 47.622 -15.119 32.143 1.00 27.05 O \ ATOM 413 N LYS L 344 49.599 -13.491 36.302 1.00 31.79 N \ ATOM 414 CA LYS L 344 49.921 -13.426 37.731 1.00 33.05 C \ ATOM 415 C LYS L 344 51.129 -12.584 38.011 1.00 37.20 C \ ATOM 416 O LYS L 344 51.340 -12.189 39.180 1.00 40.17 O \ ATOM 417 CB LYS L 344 50.077 -14.776 38.400 1.00 32.68 C \ ATOM 418 CG LYS L 344 48.865 -15.664 38.484 1.00 38.60 C \ ATOM 419 CD LYS L 344 47.624 -15.050 39.109 1.00 50.10 C \ ATOM 420 CE LYS L 344 47.522 -15.293 40.595 1.00 63.48 C \ ATOM 421 NZ LYS L 344 46.883 -16.640 40.868 1.00 79.75 N \ ATOM 422 N LYS L 345 51.890 -12.272 36.957 1.00 38.74 N \ ATOM 423 CA LYS L 345 53.017 -11.357 37.016 1.00 34.72 C \ ATOM 424 C LYS L 345 52.740 -10.020 36.313 1.00 38.47 C \ ATOM 425 O LYS L 345 53.672 -9.225 36.085 1.00 37.20 O \ ATOM 426 CB LYS L 345 54.213 -11.986 36.350 1.00 39.27 C \ ATOM 427 CG LYS L 345 54.706 -13.243 36.976 1.00 43.89 C \ ATOM 428 CD LYS L 345 56.160 -13.459 36.627 1.00 51.55 C \ ATOM 429 CE LYS L 345 56.762 -14.535 37.512 1.00 63.34 C \ ATOM 430 NZ LYS L 345 58.191 -14.692 37.122 1.00 74.66 N \ ATOM 431 N SER L 346 51.493 -9.769 35.924 1.00 35.66 N \ ATOM 432 CA SER L 346 51.194 -8.570 35.100 1.00 45.74 C \ ATOM 433 C SER L 346 52.098 -8.423 33.860 1.00 47.64 C \ ATOM 434 O SER L 346 52.401 -7.311 33.451 1.00 53.85 O \ ATOM 435 CB SER L 346 51.281 -7.288 35.960 1.00 48.03 C \ ATOM 436 OG SER L 346 50.654 -7.483 37.216 1.00 48.01 O \ ATOM 437 N LEU L 347 52.536 -9.547 33.291 1.00 42.77 N \ ATOM 438 CA LEU L 347 53.185 -9.551 32.010 1.00 44.41 C \ ATOM 439 C LEU L 347 52.167 -10.004 30.972 1.00 44.29 C \ ATOM 440 O LEU L 347 51.283 -10.825 31.282 1.00 44.12 O \ ATOM 441 CB LEU L 347 54.393 -10.480 32.045 1.00 43.82 C \ ATOM 442 CG LEU L 347 55.493 -10.047 33.022 1.00 48.45 C \ ATOM 443 CD1 LEU L 347 56.621 -11.093 33.094 1.00 45.90 C \ ATOM 444 CD2 LEU L 347 56.023 -8.646 32.644 1.00 43.86 C \ ATOM 445 N GLU L 348 52.278 -9.432 29.769 1.00 47.41 N \ ATOM 446 CA GLU L 348 51.471 -9.799 28.585 1.00 48.06 C \ ATOM 447 C GLU L 348 52.306 -10.649 27.662 1.00 44.05 C \ ATOM 448 O GLU L 348 53.539 -10.436 27.546 1.00 38.49 O \ ATOM 449 CB GLU L 348 51.018 -8.569 27.796 1.00 52.17 C \ ATOM 450 CG GLU L 348 49.988 -7.745 28.568 1.00 67.31 C \ ATOM 451 CD GLU L 348 49.460 -6.511 27.815 1.00 78.23 C \ ATOM 452 OE1 GLU L 348 49.808 -6.312 26.584 1.00 65.57 O \ ATOM 453 OE2 GLU L 348 48.676 -5.767 28.509 1.00 77.18 O \ ATOM 454 N ASP L 349 51.656 -11.615 27.001 1.00 34.26 N \ ATOM 455 CA ASP L 349 52.406 -12.366 26.036 1.00 32.53 C \ ATOM 456 C ASP L 349 52.468 -11.485 24.762 1.00 32.58 C \ ATOM 457 O ASP L 349 51.714 -10.487 24.613 1.00 33.63 O \ ATOM 458 CB ASP L 349 51.872 -13.794 25.849 1.00 31.75 C \ ATOM 459 CG ASP L 349 50.524 -13.841 25.178 1.00 30.75 C \ ATOM 460 OD1 ASP L 349 50.381 -13.215 24.096 1.00 34.25 O \ ATOM 461 OD2 ASP L 349 49.603 -14.475 25.725 1.00 30.95 O \ ATOM 462 N LYS L 350 53.364 -11.871 23.872 1.00 33.62 N \ ATOM 463 CA LYS L 350 53.599 -11.175 22.611 1.00 40.39 C \ ATOM 464 C LYS L 350 52.397 -10.955 21.667 1.00 40.63 C \ ATOM 465 O LYS L 350 52.464 -10.049 20.898 1.00 40.86 O \ ATOM 466 CB LYS L 350 54.707 -11.876 21.860 1.00 49.91 C \ ATOM 467 CG LYS L 350 56.076 -11.613 22.455 1.00 61.98 C \ ATOM 468 CD LYS L 350 57.183 -12.358 21.706 1.00 85.51 C \ ATOM 469 CE LYS L 350 58.578 -12.028 22.286 1.00 96.05 C \ ATOM 470 NZ LYS L 350 59.492 -13.215 22.311 1.00 96.85 N \ ATOM 471 N THR L 351 51.318 -11.751 21.709 1.00 38.81 N \ ATOM 472 CA THR L 351 50.224 -11.566 20.750 1.00 38.42 C \ ATOM 473 C THR L 351 48.875 -11.400 21.373 1.00 37.56 C \ ATOM 474 O THR L 351 47.885 -11.198 20.684 1.00 35.89 O \ ATOM 475 CB THR L 351 50.194 -12.699 19.688 1.00 42.68 C \ ATOM 476 OG1 THR L 351 49.984 -13.976 20.300 1.00 43.22 O \ ATOM 477 CG2 THR L 351 51.542 -12.754 18.903 1.00 37.61 C \ ATOM 478 N GLU L 352 48.804 -11.441 22.687 1.00 36.17 N \ ATOM 479 CA GLU L 352 47.489 -11.321 23.291 1.00 40.62 C \ ATOM 480 C GLU L 352 46.796 -9.970 22.979 1.00 39.34 C \ ATOM 481 O GLU L 352 45.565 -9.902 22.900 1.00 35.76 O \ ATOM 482 CB GLU L 352 47.533 -11.656 24.797 1.00 39.00 C \ ATOM 483 CG GLU L 352 48.290 -10.680 25.676 1.00 42.25 C \ ATOM 484 CD GLU L 352 48.079 -10.962 27.153 1.00 38.15 C \ ATOM 485 OE1 GLU L 352 47.084 -10.467 27.652 1.00 43.36 O \ ATOM 486 OE2 GLU L 352 48.911 -11.665 27.774 1.00 35.25 O \ ATOM 487 N ARG L 353 47.595 -8.912 22.816 1.00 45.75 N \ ATOM 488 CA ARG L 353 47.124 -7.608 22.287 1.00 51.53 C \ ATOM 489 C ARG L 353 46.171 -7.768 21.049 1.00 47.00 C \ ATOM 490 O ARG L 353 45.067 -7.190 20.966 1.00 35.36 O \ ATOM 491 CB ARG L 353 48.365 -6.790 21.898 1.00 63.82 C \ ATOM 492 CG ARG L 353 48.246 -5.283 22.025 1.00 83.14 C \ ATOM 493 CD ARG L 353 48.217 -4.821 23.489 1.00100.96 C \ ATOM 494 NE ARG L 353 46.840 -4.728 23.987 1.00112.65 N \ ATOM 495 CZ ARG L 353 46.457 -4.179 25.139 1.00111.80 C \ ATOM 496 NH1 ARG L 353 47.350 -3.640 25.978 1.00109.92 N \ ATOM 497 NH2 ARG L 353 45.152 -4.169 25.445 1.00100.17 N \ ATOM 498 N GLU L 354 46.602 -8.615 20.113 1.00 45.53 N \ ATOM 499 CA GLU L 354 45.841 -8.887 18.891 1.00 45.96 C \ ATOM 500 C GLU L 354 44.398 -9.383 19.206 1.00 41.17 C \ ATOM 501 O GLU L 354 43.402 -8.981 18.558 1.00 35.82 O \ ATOM 502 CB GLU L 354 46.692 -9.821 17.978 1.00 52.93 C \ ATOM 503 CG GLU L 354 45.960 -10.395 16.765 1.00 61.24 C \ ATOM 504 CD GLU L 354 46.788 -11.335 15.864 1.00 60.90 C \ ATOM 505 OE1 GLU L 354 47.910 -11.765 16.260 1.00 53.87 O \ ATOM 506 OE2 GLU L 354 46.240 -11.663 14.766 1.00 54.37 O \ ATOM 507 N LEU L 355 44.247 -10.178 20.258 1.00 37.47 N \ ATOM 508 CA LEU L 355 42.936 -10.771 20.534 1.00 37.62 C \ ATOM 509 C LEU L 355 41.986 -9.735 21.099 1.00 43.03 C \ ATOM 510 O LEU L 355 40.755 -9.696 20.763 1.00 38.06 O \ ATOM 511 CB LEU L 355 43.067 -11.962 21.515 1.00 38.52 C \ ATOM 512 CG LEU L 355 44.000 -13.109 21.126 1.00 38.05 C \ ATOM 513 CD1 LEU L 355 44.114 -14.105 22.228 1.00 39.39 C \ ATOM 514 CD2 LEU L 355 43.438 -13.806 19.914 1.00 39.34 C \ ATOM 515 N LEU L 356 42.547 -8.929 22.002 1.00 45.94 N \ ATOM 516 CA LEU L 356 41.798 -7.839 22.649 1.00 51.69 C \ ATOM 517 C LEU L 356 41.353 -6.786 21.596 1.00 43.85 C \ ATOM 518 O LEU L 356 40.206 -6.395 21.534 1.00 34.74 O \ ATOM 519 CB LEU L 356 42.677 -7.158 23.701 1.00 62.18 C \ ATOM 520 CG LEU L 356 42.082 -7.270 25.108 1.00 82.52 C \ ATOM 521 CD1 LEU L 356 42.660 -8.521 25.850 1.00 78.45 C \ ATOM 522 CD2 LEU L 356 42.282 -5.932 25.835 1.00 86.69 C \ ATOM 523 N GLU L 357 42.264 -6.394 20.720 1.00 42.58 N \ ATOM 524 CA GLU L 357 41.874 -5.531 19.573 1.00 45.31 C \ ATOM 525 C GLU L 357 40.724 -6.115 18.746 1.00 44.89 C \ ATOM 526 O GLU L 357 39.849 -5.388 18.335 1.00 47.91 O \ ATOM 527 CB GLU L 357 43.073 -5.182 18.709 1.00 46.61 C \ ATOM 528 CG GLU L 357 44.013 -4.195 19.420 1.00 52.49 C \ ATOM 529 CD GLU L 357 45.461 -4.212 18.918 1.00 60.65 C \ ATOM 530 OE1 GLU L 357 45.777 -4.845 17.886 1.00 69.79 O \ ATOM 531 OE2 GLU L 357 46.320 -3.597 19.586 1.00 72.53 O \ ATOM 532 N SER L 358 40.614 -7.434 18.639 1.00 44.39 N \ ATOM 533 CA SER L 358 39.518 -7.985 17.838 1.00 41.51 C \ ATOM 534 C SER L 358 38.160 -7.772 18.453 1.00 41.01 C \ ATOM 535 O SER L 358 37.181 -7.974 17.790 1.00 45.05 O \ ATOM 536 CB SER L 358 39.771 -9.471 17.472 1.00 39.43 C \ ATOM 537 OG SER L 358 39.468 -10.402 18.518 1.00 39.02 O \ ATOM 538 N TYR L 359 38.072 -7.433 19.732 1.00 48.13 N \ ATOM 539 CA TYR L 359 36.749 -7.196 20.357 1.00 54.78 C \ ATOM 540 C TYR L 359 36.169 -5.795 20.024 1.00 56.83 C \ ATOM 541 O TYR L 359 34.962 -5.565 20.089 1.00 55.06 O \ ATOM 542 CB TYR L 359 36.870 -7.312 21.866 1.00 56.23 C \ ATOM 543 CG TYR L 359 37.306 -8.677 22.349 1.00 55.68 C \ ATOM 544 CD1 TYR L 359 36.623 -9.811 21.973 1.00 57.09 C \ ATOM 545 CD2 TYR L 359 38.379 -8.826 23.205 1.00 53.33 C \ ATOM 546 CE1 TYR L 359 37.004 -11.058 22.431 1.00 61.81 C \ ATOM 547 CE2 TYR L 359 38.767 -10.076 23.674 1.00 52.39 C \ ATOM 548 CZ TYR L 359 38.067 -11.184 23.287 1.00 52.46 C \ ATOM 549 OH TYR L 359 38.420 -12.427 23.722 1.00 56.18 O \ ATOM 550 N ILE L 360 37.077 -4.889 19.680 1.00 66.33 N \ ATOM 551 CA ILE L 360 36.784 -3.512 19.306 1.00 82.46 C \ ATOM 552 C ILE L 360 36.411 -3.473 17.807 1.00 91.43 C \ ATOM 553 O ILE L 360 35.219 -3.383 17.438 1.00 86.17 O \ ATOM 554 CB ILE L 360 38.031 -2.644 19.653 1.00 81.89 C \ ATOM 555 CG1 ILE L 360 38.170 -2.536 21.187 1.00 84.40 C \ ATOM 556 CG2 ILE L 360 37.962 -1.278 18.980 1.00 92.54 C \ ATOM 557 CD1 ILE L 360 39.608 -2.476 21.685 1.00 89.58 C \ ATOM 558 N ASP L 361 37.440 -3.623 16.966 1.00110.30 N \ ATOM 559 CA ASP L 361 37.315 -3.562 15.507 1.00128.04 C \ ATOM 560 C ASP L 361 36.568 -4.766 14.963 1.00131.21 C \ ATOM 561 O ASP L 361 36.222 -4.798 13.787 1.00129.02 O \ ATOM 562 CB ASP L 361 38.704 -3.467 14.840 1.00128.91 C \ ATOM 563 CG ASP L 361 39.330 -2.091 14.993 1.00134.83 C \ ATOM 564 OD1 ASP L 361 38.648 -1.078 14.712 1.00136.44 O \ ATOM 565 OD2 ASP L 361 40.507 -2.018 15.387 1.00124.90 O \ TER 566 ASP L 361 \ TER 2717 GLU H 622 \ HETATM 2794 O HOH L 401 41.956 -24.416 43.782 1.00 65.65 O \ HETATM 2795 O HOH L 402 49.735 -10.009 16.808 1.00 51.74 O \ HETATM 2796 O HOH L 403 40.285 -13.959 22.630 1.00 30.01 O \ HETATM 2797 O HOH L 404 50.360 -8.626 23.210 1.00 39.67 O \ HETATM 2798 O HOH L 405 51.367 -8.610 39.559 1.00 48.09 O \ HETATM 2799 O HOH L 406 56.682 -14.561 31.373 1.00 37.46 O \ HETATM 2800 O HOH L 407 47.787 -19.006 38.657 1.00 42.40 O \ HETATM 2801 O HOH L 408 48.698 -11.450 30.583 1.00 35.40 O \ HETATM 2802 O HOH L 409 49.522 -11.934 41.348 1.00 53.77 O \ HETATM 2803 O HOH L 410 54.031 -16.507 39.269 1.00 42.40 O \ HETATM 2804 O HOH L 411 36.094 -7.653 14.874 1.00 53.50 O \ HETATM 2805 O HOH L 412 61.093 -13.400 37.363 1.00 57.69 O \ HETATM 2806 O HOH L 413 54.295 -8.192 25.161 1.00 53.59 O \ HETATM 2807 O HOH L 414 43.770 -15.412 42.057 1.00 68.74 O \ HETATM 2808 O HOH L 415 53.564 -7.451 39.657 1.00 57.65 O \ HETATM 2809 O HOH L 416 58.687 -14.679 33.284 1.00 50.23 O \ HETATM 2810 O HOH L 417 45.662 -12.254 38.511 1.00 54.14 O \ HETATM 2811 O HOH L 418 62.983 -15.602 35.505 1.00 68.74 O \ HETATM 2812 O HOH L 419 63.090 -9.792 36.756 1.00 65.44 O \ CONECT 14 2718 \ CONECT 36 2718 \ CONECT 50 63 \ CONECT 62 63 \ CONECT 63 50 62 64 65 \ CONECT 64 63 \ CONECT 65 63 66 \ CONECT 66 65 67 \ CONECT 67 66 68 71 \ CONECT 68 67 69 70 \ CONECT 69 68 88 \ CONECT 70 68 72 \ CONECT 71 67 72 \ CONECT 72 70 71 73 \ CONECT 73 72 74 75 \ CONECT 74 73 80 \ CONECT 75 73 76 77 \ CONECT 76 75 \ CONECT 77 75 78 \ CONECT 78 77 79 80 \ CONECT 79 78 \ CONECT 80 74 78 81 \ CONECT 81 80 82 \ CONECT 82 81 83 \ CONECT 83 82 84 \ CONECT 84 83 85 \ CONECT 85 84 86 87 \ CONECT 86 85 \ CONECT 87 85 \ CONECT 88 69 \ CONECT 104 2718 \ CONECT 126 2718 \ CONECT 210 2718 \ CONECT 232 2718 \ CONECT 294 2718 \ CONECT 316 2718 \ CONECT 354 1589 \ CONECT 785 914 \ CONECT 914 785 \ CONECT 995 2750 \ CONECT 1589 354 \ CONECT 2009 2125 \ CONECT 2125 2009 \ CONECT 2226 2459 \ CONECT 2459 2226 \ CONECT 2471 2749 \ CONECT 2494 2749 \ CONECT 2718 14 36 104 126 \ CONECT 2718 210 232 294 316 \ CONECT 2719 2720 \ CONECT 2720 2719 2721 2723 \ CONECT 2721 2720 2722 2730 \ CONECT 2722 2721 \ CONECT 2723 2720 2724 \ CONECT 2724 2723 2725 2726 \ CONECT 2725 2724 2727 \ CONECT 2726 2724 2728 \ CONECT 2727 2725 2729 \ CONECT 2728 2726 2729 \ CONECT 2729 2727 2728 \ CONECT 2730 2721 2731 2736 \ CONECT 2731 2730 2732 2734 \ CONECT 2732 2731 2733 2737 \ CONECT 2733 2732 \ CONECT 2734 2731 2735 \ CONECT 2735 2734 2736 \ CONECT 2736 2730 2735 \ CONECT 2737 2732 2738 \ CONECT 2738 2737 2739 2741 \ CONECT 2739 2738 2740 2748 \ CONECT 2740 2739 \ CONECT 2741 2738 2742 \ CONECT 2742 2741 2743 \ CONECT 2743 2742 2744 \ CONECT 2744 2743 2745 \ CONECT 2745 2744 2746 2747 \ CONECT 2746 2745 \ CONECT 2747 2745 \ CONECT 2748 2739 \ CONECT 2749 2471 2494 2835 2852 \ CONECT 2749 2864 2930 \ CONECT 2750 995 2751 2761 \ CONECT 2751 2750 2752 2758 \ CONECT 2752 2751 2753 2759 \ CONECT 2753 2752 2754 2760 \ CONECT 2754 2753 2755 2761 \ CONECT 2755 2754 2762 \ CONECT 2756 2757 2758 2763 \ CONECT 2757 2756 \ CONECT 2758 2751 2756 \ CONECT 2759 2752 \ CONECT 2760 2753 \ CONECT 2761 2750 2754 \ CONECT 2762 2755 \ CONECT 2763 2756 \ CONECT 2835 2749 \ CONECT 2852 2749 \ CONECT 2864 2749 \ CONECT 2930 2749 \ MASTER 419 0 5 8 16 0 0 6 2935 3 99 25 \ END \ """, "6eo7chainL") cmd.hide("all") cmd.color('grey70', "6eo7chainL") cmd.show('cartoon', "6eo7chainL") cmd.center("6eo7chainL", state=0, origin=1) cmd.zoom("6eo7chainL", animate=-1) cmd.select("e6eo7L1", "c. L & i. 332-361") cmd.color("red", "e6eo7L1") cmd.disable("e6eo7L1")