cmd.read_pdbstr("""\ HEADER HYDROLASE 06-DEC-22 8BW5 \ TITLE X-RAY STRUCTURE OF THE COMPLEX BETWEEN HUMAN ALPHA THROMBIN AND THE \ TITLE 2 DUPLEX/QUADRUPLEX APTAMER M08S-1_41MER \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: THROMBIN LIGHT CHAIN; \ COMPND 3 CHAIN: L; \ COMPND 4 EC: 3.4.21.5; \ COMPND 5 MOL_ID: 2; \ COMPND 6 MOLECULE: THROMBIN HEAVY CHAIN; \ COMPND 7 CHAIN: H; \ COMPND 8 FRAGMENT: THROMBIN HEAVY CHAIN, UNP RESIDUES 364-622; \ COMPND 9 EC: 3.4.21.5; \ COMPND 10 MOL_ID: 3; \ COMPND 11 MOLECULE: M08S-1_41MER; \ COMPND 12 CHAIN: F; \ COMPND 13 ENGINEERED: YES \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 3 ORGANISM_COMMON: HUMAN; \ SOURCE 4 ORGANISM_TAXID: 9606; \ SOURCE 5 MOL_ID: 2; \ SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; \ SOURCE 7 ORGANISM_COMMON: HUMAN; \ SOURCE 8 ORGANISM_TAXID: 9606; \ SOURCE 9 MOL_ID: 3; \ SOURCE 10 SYNTHETIC: YES; \ SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; \ SOURCE 12 ORGANISM_TAXID: 32630 \ KEYWDS DNA APTAMER, G-QUADRUPLEX, DUPLEX, DUPLEX/QUADRUPLEX, THROMBIN \ KEYWDS 2 BINDING APTAMER, THROMBIN, COAGULATION FACTOR, ANTICOAGULANT, \ KEYWDS 3 HYDROLASE \ EXPDTA X-RAY DIFFRACTION \ AUTHOR R.TROISI,V.NAPOLITANO,F.SICA \ REVDAT 4 16-OCT-24 8BW5 1 REMARK \ REVDAT 3 20-SEP-23 8BW5 1 JRNL \ REVDAT 2 09-AUG-23 8BW5 1 JRNL \ REVDAT 1 19-JUL-23 8BW5 0 \ JRNL AUTH R.TROISI,V.NAPOLITANO,E.ROSSITTO,W.OSMAN,M.NAGANO,K.WAKUI, \ JRNL AUTH 2 G.M.POPOWICZ,K.YOSHIMOTO,F.SICA \ JRNL TITL STERIC HINDRANCE AND STRUCTURAL FLEXIBILITY SHAPE THE \ JRNL TITL 2 FUNCTIONAL PROPERTIES OF A GUANINE-RICH OLIGONUCLEOTIDE. \ JRNL REF NUCLEIC ACIDS RES. V. 51 8880 2023 \ JRNL REFN ESSN 1362-4962 \ JRNL PMID 37503836 \ JRNL DOI 10.1093/NAR/GKAD634 \ REMARK 2 \ REMARK 2 RESOLUTION. 2.80 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 PROGRAM : REFMAC 5.8.0352 \ REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, \ REMARK 3 : NICHOLLS,WINN,LONG,VAGIN \ REMARK 3 \ REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD \ REMARK 3 \ REMARK 3 DATA USED IN REFINEMENT. \ REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 \ REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.27 \ REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL \ REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 \ REMARK 3 NUMBER OF REFLECTIONS : 14350 \ REMARK 3 \ REMARK 3 FIT TO DATA USED IN REFINEMENT. \ REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT \ REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM \ REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 \ REMARK 3 R VALUE (WORKING SET) : 0.206 \ REMARK 3 FREE R VALUE : 0.252 \ REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 \ REMARK 3 FREE R VALUE TEST SET COUNT : 721 \ REMARK 3 \ REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. \ REMARK 3 TOTAL NUMBER OF BINS USED : 20 \ REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 \ REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 \ REMARK 3 REFLECTION IN BIN (WORKING SET) : 1036 \ REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 \ REMARK 3 BIN R VALUE (WORKING SET) : 0.3830 \ REMARK 3 BIN FREE R VALUE SET COUNT : 46 \ REMARK 3 BIN FREE R VALUE : 0.4520 \ REMARK 3 \ REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. \ REMARK 3 PROTEIN ATOMS : 2342 \ REMARK 3 NUCLEIC ACID ATOMS : 846 \ REMARK 3 HETEROGEN ATOMS : 138 \ REMARK 3 SOLVENT ATOMS : 21 \ REMARK 3 \ REMARK 3 B VALUES. \ REMARK 3 FROM WILSON PLOT (A**2) : NULL \ REMARK 3 MEAN B VALUE (OVERALL, A**2) : 77.14 \ REMARK 3 OVERALL ANISOTROPIC B VALUE. \ REMARK 3 B11 (A**2) : -0.29000 \ REMARK 3 B22 (A**2) : 0.51000 \ REMARK 3 B33 (A**2) : -0.22000 \ REMARK 3 B12 (A**2) : 0.00000 \ REMARK 3 B13 (A**2) : 0.00000 \ REMARK 3 B23 (A**2) : 0.00000 \ REMARK 3 \ REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. \ REMARK 3 ESU BASED ON R VALUE (A): 1.095 \ REMARK 3 ESU BASED ON FREE R VALUE (A): 0.346 \ REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 \ REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.605 \ REMARK 3 \ REMARK 3 CORRELATION COEFFICIENTS. \ REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 \ REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 \ REMARK 3 \ REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT \ REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3505 ; 0.003 ; 0.012 \ REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4935 ; 1.280 ; 1.709 \ REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL \ REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 288 ; 6.666 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 23 ; 4.953 ; 5.000 \ REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;15.795 ;10.000 \ REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL \ REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.113 ; 0.200 \ REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2307 ; 0.004 ; 0.020 \ REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL \ REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1161 ; 2.702 ; 5.658 \ REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1446 ; 4.479 ; 8.484 \ REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2344 ; 4.024 ; 8.912 \ REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5700 ; 9.711 ; NULL \ REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT \ REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL \ REMARK 3 \ REMARK 3 NCS RESTRAINTS STATISTICS \ REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL \ REMARK 3 \ REMARK 3 TLS DETAILS \ REMARK 3 NUMBER OF TLS GROUPS : NULL \ REMARK 3 \ REMARK 3 BULK SOLVENT MODELLING. \ REMARK 3 METHOD USED : MASK \ REMARK 3 PARAMETERS FOR MASK CALCULATION \ REMARK 3 VDW PROBE RADIUS : 1.20 \ REMARK 3 ION PROBE RADIUS : 0.80 \ REMARK 3 SHRINKAGE RADIUS : 0.80 \ REMARK 3 \ REMARK 3 OTHER REFINEMENT REMARKS: NULL \ REMARK 4 \ REMARK 4 8BW5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-DEC-22. \ REMARK 100 THE DEPOSITION ID IS D_1292127209. \ REMARK 200 \ REMARK 200 EXPERIMENTAL DETAILS \ REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION \ REMARK 200 DATE OF DATA COLLECTION : 13-JUL-21 \ REMARK 200 TEMPERATURE (KELVIN) : 100 \ REMARK 200 PH : 6.5 \ REMARK 200 NUMBER OF CRYSTALS USED : 1 \ REMARK 200 \ REMARK 200 SYNCHROTRON (Y/N) : Y \ REMARK 200 RADIATION SOURCE : ELETTRA \ REMARK 200 BEAMLINE : 11.2C \ REMARK 200 X-RAY GENERATOR MODEL : NULL \ REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M \ REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 \ REMARK 200 MONOCHROMATOR : M \ REMARK 200 OPTICS : NULL \ REMARK 200 \ REMARK 200 DETECTOR TYPE : PIXEL \ REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M \ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS \ REMARK 200 DATA SCALING SOFTWARE : XSCALE \ REMARK 200 \ REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15101 \ REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 \ REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 \ REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL \ REMARK 200 \ REMARK 200 OVERALL. \ REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 \ REMARK 200 DATA REDUNDANCY : 37.50 \ REMARK 200 R MERGE (I) : NULL \ REMARK 200 R SYM (I) : NULL \ REMARK 200 FOR THE DATA SET : 10.1000 \ REMARK 200 \ REMARK 200 IN THE HIGHEST RESOLUTION SHELL. \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 \ REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 \ REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 \ REMARK 200 DATA REDUNDANCY IN SHELL : NULL \ REMARK 200 R MERGE FOR SHELL (I) : NULL \ REMARK 200 R SYM FOR SHELL (I) : NULL \ REMARK 200 FOR SHELL : 1.500 \ REMARK 200 \ REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH \ REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT \ REMARK 200 SOFTWARE USED: PHASER \ REMARK 200 STARTING MODEL: NULL \ REMARK 200 \ REMARK 200 REMARK: NULL \ REMARK 280 \ REMARK 280 CRYSTAL \ REMARK 280 SOLVENT CONTENT, VS (%): 61.80 \ REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 \ REMARK 280 \ REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000 20% W/V, MAGNESIUM ACETATE \ REMARK 280 0.2 M, SODIUM CACODYLATE 0.1 M, PH 6.5, VAPOR DIFFUSION, HANGING \ REMARK 280 DROP, TEMPERATURE 293K \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY \ REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21 \ REMARK 290 \ REMARK 290 SYMOP SYMMETRY \ REMARK 290 NNNMMM OPERATOR \ REMARK 290 1555 X,Y,Z \ REMARK 290 2555 -X,Y,-Z \ REMARK 290 3555 X+1/2,-Y,-Z+1/2 \ REMARK 290 4555 -X+1/2,-Y,Z+1/2 \ REMARK 290 \ REMARK 290 WHERE NNN -> OPERATOR NUMBER \ REMARK 290 MMM -> TRANSLATION VECTOR \ REMARK 290 \ REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS \ REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM \ REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY \ REMARK 290 RELATED MOLECULES. \ REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 \ REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 \ REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 34.03000 \ REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.15500 \ REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 34.03000 \ REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 \ REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.15500 \ REMARK 290 \ REMARK 290 REMARK: NULL \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC \ REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC \ REMARK 350 SOFTWARE USED: PISA \ REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 \ REMARK 350 SURFACE AREA OF THE COMPLEX: 20410 ANGSTROM**2 \ REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, F, A \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 THR L -2 \ REMARK 465 PHE L -1 \ REMARK 465 GLY L 0 \ REMARK 465 GLY L 15 \ REMARK 465 ARG L 16 \ REMARK 465 DC F 41 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND ANGLES \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 \ REMARK 500 DG F 9 C3' - O3' - P ANGL. DEV. = -7.8 DEGREES \ REMARK 500 DG F 14 C3' - O3' - P ANGL. DEV. = -7.5 DEGREES \ REMARK 500 DG F 19 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES \ REMARK 500 DG F 23 C3' - O3' - P ANGL. DEV. = -9.0 DEGREES \ REMARK 500 DG F 27 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: TORSION ANGLES \ REMARK 500 \ REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: \ REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) \ REMARK 500 \ REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- \ REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 \ REMARK 500 \ REMARK 500 M RES CSSEQI PSI PHI \ REMARK 500 PHE L 7 -82.80 -127.09 \ REMARK 500 LYS L 9 0.29 -63.95 \ REMARK 500 ASN H 60G 87.73 -167.19 \ REMARK 500 HIS H 71 -63.87 -128.08 \ REMARK 500 ILE H 79 -54.11 -126.29 \ REMARK 500 GLU H 97A -71.27 -128.07 \ REMARK 500 ASN H 98 30.43 -143.42 \ REMARK 500 SER H 214 -75.51 -109.41 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 620 \ REMARK 620 METAL COORDINATION \ REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 NA H 302 NA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 ARG H 221 O \ REMARK 620 2 LYS H 224 O 82.3 \ REMARK 620 3 HOH H 402 O 133.6 58.0 \ REMARK 620 N 1 2 \ REMARK 620 \ REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL \ REMARK 620 NA F 101 NA \ REMARK 620 N RES CSSEQI ATOM \ REMARK 620 1 DG F 14 O6 \ REMARK 620 2 DG F 15 O6 71.0 \ REMARK 620 3 DG F 18 O6 123.6 63.8 \ REMARK 620 4 DG F 19 O6 70.2 102.8 88.3 \ REMARK 620 5 DG F 22 O6 115.8 163.3 117.1 93.9 \ REMARK 620 6 DG F 23 O6 159.9 99.1 62.3 129.7 69.3 \ REMARK 620 7 DG F 26 O6 96.6 59.5 88.4 161.4 103.9 63.6 \ REMARK 620 8 DG F 27 O6 60.2 100.7 156.7 113.0 72.5 106.4 68.4 \ REMARK 620 N 1 2 3 4 5 6 7 \ REMARK 630 \ REMARK 630 MOLECULE TYPE: NULL \ REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] \ REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE \ REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; \ REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 630 \ REMARK 630 M RES C SSSEQI \ REMARK 630 0G6 H 301 \ REMARK 630 SOURCE: NULL \ REMARK 630 TAXONOMY: NULL \ REMARK 630 SUBCOMP: DPN PRO AR7 0QE \ REMARK 630 DETAILS: NULL \ DBREF 8BW5 L -2 16 UNP P00734 THRB_HUMAN 328 363 \ DBREF 8BW5 H 16 247 UNP P00734 THRB_HUMAN 364 622 \ DBREF 8BW5 F 1 41 PDB 8BW5 8BW5 1 41 \ SEQRES 1 L 36 THR PHE GLY SER GLY GLU ALA ASP CYS GLY LEU ARG PRO \ SEQRES 2 L 36 LEU PHE GLU LYS LYS SER LEU GLU ASP LYS THR GLU ARG \ SEQRES 3 L 36 GLU LEU LEU GLU SER TYR ILE ASP GLY ARG \ SEQRES 1 H 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO \ SEQRES 2 H 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU \ SEQRES 3 H 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU \ SEQRES 4 H 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS \ SEQRES 5 H 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS \ SEQRES 6 H 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE \ SEQRES 7 H 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN \ SEQRES 8 H 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS \ SEQRES 9 H 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO \ SEQRES 10 H 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU \ SEQRES 11 H 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN \ SEQRES 12 H 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN \ SEQRES 13 H 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU \ SEQRES 14 H 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR \ SEQRES 15 H 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY \ SEQRES 16 H 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP SER GLY GLY PRO \ SEQRES 17 H 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN \ SEQRES 18 H 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP \ SEQRES 19 H 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS \ SEQRES 20 H 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU \ SEQRES 1 F 41 DG DG DT DC DA DG DA DT DG DA DT DG DG \ SEQRES 2 F 41 DG DG DA DT DG DG DG DG DG DG DT DT DG \ SEQRES 3 F 41 DG DA DG DG DA DA DT DG DG DA DT DG DA \ SEQRES 4 F 41 DC DC \ HET NAG A 1 14 \ HET NAG A 2 14 \ HET BMA A 3 11 \ HET MAN A 4 11 \ HET NAG A 5 14 \ HET GAL A 6 11 \ HET SIA A 7 20 \ HET MAN A 8 11 \ HET 0G6 H 301 30 \ HET NA H 302 1 \ HET NA F 101 1 \ HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE \ HETNAM BMA BETA-D-MANNOPYRANOSE \ HETNAM MAN ALPHA-D-MANNOPYRANOSE \ HETNAM GAL BETA-D-GALACTOPYRANOSE \ HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID \ HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) \ HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- \ HETNAM 3 0G6 PROLINAMIDE \ HETNAM NA SODIUM ION \ HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- \ HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- \ HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE \ HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE \ HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE \ HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE \ HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC \ HETSYN 2 SIA ACID; O-SIALIC ACID \ HETSYN 0G6 PPACK \ FORMUL 4 NAG 3(C8 H15 N O6) \ FORMUL 4 BMA C6 H12 O6 \ FORMUL 4 MAN 2(C6 H12 O6) \ FORMUL 4 GAL C6 H12 O6 \ FORMUL 4 SIA C11 H19 N O9 \ FORMUL 5 0G6 C21 H34 CL N6 O3 1+ \ FORMUL 6 NA 2(NA 1+) \ FORMUL 8 HOH *21(H2 O) \ HELIX 1 AA1 PHE L 7 SER L 11 5 5 \ HELIX 2 AA2 GLU L 14C TYR L 14J 1 8 \ HELIX 3 AA3 ALA H 55 CYS H 58 5 4 \ HELIX 4 AA4 PRO H 60B ASP H 60E 5 4 \ HELIX 5 AA5 THR H 60I ASN H 62 5 3 \ HELIX 6 AA6 ASP H 125 LEU H 130 1 9 \ HELIX 7 AA7 GLU H 164 THR H 172 1 9 \ HELIX 8 AA8 LYS H 185 GLY H 186C 5 5 \ HELIX 9 AA9 LEU H 234 ASP H 243 1 10 \ SHEET 1 AA1 3 SER H 20 ASP H 21 0 \ SHEET 2 AA1 3 GLN H 156 PRO H 161 -1 O VAL H 157 N SER H 20 \ SHEET 3 AA1 3 LYS H 135 GLY H 140 -1 N VAL H 138 O VAL H 158 \ SHEET 1 AA2 7 LYS H 81 SER H 83 0 \ SHEET 2 AA2 7 LEU H 64 ILE H 68 -1 N ILE H 68 O LYS H 81 \ SHEET 3 AA2 7 GLN H 30 ARG H 35 -1 N PHE H 34 O LEU H 65 \ SHEET 4 AA2 7 GLU H 39 LEU H 46 -1 O GLU H 39 N ARG H 35 \ SHEET 5 AA2 7 TRP H 51 THR H 54 -1 O LEU H 53 N SER H 45 \ SHEET 6 AA2 7 ALA H 104 LEU H 108 -1 O ALA H 104 N THR H 54 \ SHEET 7 AA2 7 LEU H 85 ILE H 90 -1 N GLU H 86 O LYS H 107 \ SHEET 1 AA3 2 LEU H 60 TYR H 60A 0 \ SHEET 2 AA3 2 LYS H 60F ASN H 60G-1 O LYS H 60F N TYR H 60A \ SHEET 1 AA4 4 MET H 180 ALA H 183 0 \ SHEET 2 AA4 4 GLY H 226 HIS H 230 -1 O TYR H 228 N PHE H 181 \ SHEET 3 AA4 4 TRP H 207 TRP H 215 -1 N TRP H 215 O PHE H 227 \ SHEET 4 AA4 4 PRO H 198 LYS H 202 -1 N MET H 201 O TYR H 208 \ SSBOND 1 CYS L 1 CYS H 122 1555 1555 2.07 \ SSBOND 2 CYS H 42 CYS H 58 1555 1555 2.04 \ SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.03 \ SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.06 \ LINK NE2 HIS H 57 C3 0G6 H 301 1555 1555 1.42 \ LINK ND2 ASN H 60G C1 NAG A 1 1555 1555 1.43 \ LINK OG SER H 195 C2 0G6 H 301 1555 1555 1.43 \ LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 \ LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.44 \ LINK O6 BMA A 3 C1 MAN A 4 1555 1555 1.45 \ LINK O3 BMA A 3 C1 MAN A 8 1555 1555 1.46 \ LINK O2 MAN A 4 C1 NAG A 5 1555 1555 1.46 \ LINK O4 NAG A 5 C1 GAL A 6 1555 1555 1.46 \ LINK O6 GAL A 6 C2 SIA A 7 1555 1555 1.43 \ LINK O ARG H 221 NA NA H 302 1555 1555 2.68 \ LINK O LYS H 224 NA NA H 302 1555 1555 2.58 \ LINK NA NA H 302 O HOH H 402 1555 1555 2.39 \ LINK O6 DG F 14 NA NA F 101 1555 1555 2.60 \ LINK O6 DG F 15 NA NA F 101 1555 1555 2.62 \ LINK O6 DG F 18 NA NA F 101 1555 1555 2.59 \ LINK O6 DG F 19 NA NA F 101 1555 1555 2.32 \ LINK O6 DG F 22 NA NA F 101 1555 1555 2.21 \ LINK O6 DG F 23 NA NA F 101 1555 1555 2.95 \ LINK O6 DG F 26 NA NA F 101 1555 1555 2.81 \ LINK O6 DG F 27 NA NA F 101 1555 1555 2.77 \ CISPEP 1 SER H 36A PRO H 37 0 0.78 \ CRYST1 68.060 75.490 114.310 90.00 90.00 90.00 P 21 2 21 4 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 0.014693 0.000000 0.000000 0.00000 \ SCALE2 0.000000 0.013247 0.000000 0.00000 \ SCALE3 0.000000 0.000000 0.008748 0.00000 \ ATOM 1 N SER L 1E 41.558 -21.832 -33.100 1.00 89.50 N \ ATOM 2 CA SER L 1E 40.353 -21.618 -32.253 1.00 91.02 C \ ATOM 3 C SER L 1E 40.767 -21.073 -30.887 1.00 94.28 C \ ATOM 4 O SER L 1E 41.683 -21.609 -30.262 1.00 95.82 O \ ATOM 5 CB SER L 1E 39.542 -22.890 -32.142 1.00 89.50 C \ ATOM 6 OG SER L 1E 40.375 -24.022 -31.917 1.00 86.72 O \ ATOM 7 N GLY L 1D 40.092 -20.001 -30.445 1.00 92.56 N \ ATOM 8 CA GLY L 1D 40.403 -19.364 -29.174 1.00 96.96 C \ ATOM 9 C GLY L 1D 39.850 -20.149 -27.983 1.00104.27 C \ ATOM 10 O GLY L 1D 38.753 -19.860 -27.510 1.00106.19 O \ ATOM 11 N GLU L 1C 40.630 -21.131 -27.502 1.00106.66 N \ ATOM 12 CA GLU L 1C 40.223 -22.018 -26.420 1.00 99.49 C \ ATOM 13 C GLU L 1C 41.076 -21.771 -25.175 1.00 91.34 C \ ATOM 14 O GLU L 1C 40.985 -22.518 -24.200 1.00 87.61 O \ ATOM 15 CB GLU L 1C 40.388 -23.494 -26.807 1.00105.15 C \ ATOM 16 CG GLU L 1C 39.549 -23.949 -27.996 1.00109.44 C \ ATOM 17 CD GLU L 1C 39.675 -25.431 -28.322 1.00107.78 C \ ATOM 18 OE1 GLU L 1C 40.214 -25.763 -29.406 1.00106.13 O \ ATOM 19 OE2 GLU L 1C 39.230 -26.255 -27.496 1.00 99.62 O \ ATOM 20 N ALA L 1B 41.912 -20.727 -25.213 1.00 84.45 N \ ATOM 21 CA ALA L 1B 42.802 -20.451 -24.099 1.00 77.50 C \ ATOM 22 C ALA L 1B 42.135 -19.482 -23.130 1.00 74.17 C \ ATOM 23 O ALA L 1B 42.627 -19.271 -22.026 1.00 76.68 O \ ATOM 24 CB ALA L 1B 44.124 -19.924 -24.604 1.00 76.46 C \ ATOM 25 N ASP L 1A 41.004 -18.907 -23.549 1.00 73.29 N \ ATOM 26 CA ASP L 1A 40.348 -17.882 -22.757 1.00 69.19 C \ ATOM 27 C ASP L 1A 38.923 -18.310 -22.397 1.00 64.28 C \ ATOM 28 O ASP L 1A 38.120 -17.487 -21.962 1.00 64.36 O \ ATOM 29 CB ASP L 1A 40.398 -16.533 -23.477 1.00 72.82 C \ ATOM 30 CG ASP L 1A 40.178 -15.351 -22.547 1.00 78.73 C \ ATOM 31 OD1 ASP L 1A 40.273 -15.546 -21.316 1.00 82.81 O \ ATOM 32 OD2 ASP L 1A 39.897 -14.250 -23.060 1.00 83.96 O \ ATOM 33 N CYS L 1 38.629 -19.606 -22.552 1.00 58.90 N \ ATOM 34 CA CYS L 1 37.296 -20.147 -22.338 1.00 57.56 C \ ATOM 35 C CYS L 1 36.854 -19.930 -20.893 1.00 54.84 C \ ATOM 36 O CYS L 1 37.679 -19.689 -20.016 1.00 56.55 O \ ATOM 37 CB CYS L 1 37.265 -21.643 -22.630 1.00 59.96 C \ ATOM 38 SG CYS L 1 38.315 -22.624 -21.521 1.00 68.53 S \ ATOM 39 N GLY L 2 35.540 -20.031 -20.659 1.00 51.24 N \ ATOM 40 CA GLY L 2 34.996 -20.117 -19.314 1.00 49.76 C \ ATOM 41 C GLY L 2 34.956 -18.767 -18.606 1.00 50.09 C \ ATOM 42 O GLY L 2 34.513 -18.680 -17.462 1.00 51.55 O \ ATOM 43 N LEU L 3 35.416 -17.720 -19.299 1.00 49.28 N \ ATOM 44 CA LEU L 3 35.463 -16.385 -18.723 1.00 50.55 C \ ATOM 45 C LEU L 3 34.516 -15.486 -19.511 1.00 52.03 C \ ATOM 46 O LEU L 3 34.673 -15.322 -20.719 1.00 55.39 O \ ATOM 47 CB LEU L 3 36.909 -15.872 -18.752 1.00 50.35 C \ ATOM 48 CG LEU L 3 37.912 -16.623 -17.869 1.00 49.23 C \ ATOM 49 CD1 LEU L 3 39.321 -16.106 -18.091 1.00 47.02 C \ ATOM 50 CD2 LEU L 3 37.545 -16.522 -16.395 1.00 47.27 C \ ATOM 51 N ARG L 4 33.524 -14.926 -18.813 1.00 51.49 N \ ATOM 52 CA ARG L 4 32.416 -14.258 -19.475 1.00 53.04 C \ ATOM 53 C ARG L 4 32.721 -12.773 -19.633 1.00 53.99 C \ ATOM 54 O ARG L 4 32.992 -12.084 -18.649 1.00 54.37 O \ ATOM 55 CB ARG L 4 31.105 -14.489 -18.716 1.00 54.43 C \ ATOM 56 CG ARG L 4 30.624 -15.932 -18.734 1.00 53.18 C \ ATOM 57 CD ARG L 4 29.379 -16.124 -17.895 1.00 52.87 C \ ATOM 58 NE ARG L 4 29.643 -15.804 -16.500 1.00 56.36 N \ ATOM 59 CZ ARG L 4 28.739 -15.874 -15.528 1.00 59.27 C \ ATOM 60 NH1 ARG L 4 27.506 -16.263 -15.800 1.00 63.10 N \ ATOM 61 NH2 ARG L 4 29.071 -15.562 -14.287 1.00 57.32 N \ ATOM 62 N PRO L 5 32.677 -12.245 -20.880 1.00 55.36 N \ ATOM 63 CA PRO L 5 32.943 -10.829 -21.144 1.00 58.44 C \ ATOM 64 C PRO L 5 32.207 -9.855 -20.224 1.00 62.43 C \ ATOM 65 O PRO L 5 32.728 -8.785 -19.915 1.00 69.66 O \ ATOM 66 CB PRO L 5 32.469 -10.656 -22.593 1.00 55.39 C \ ATOM 67 CG PRO L 5 32.741 -12.008 -23.212 1.00 55.34 C \ ATOM 68 CD PRO L 5 32.407 -13.000 -22.115 1.00 54.88 C \ ATOM 69 N LEU L 6 31.009 -10.242 -19.775 1.00 61.27 N \ ATOM 70 CA LEU L 6 30.162 -9.338 -19.017 1.00 60.06 C \ ATOM 71 C LEU L 6 30.222 -9.665 -17.528 1.00 62.94 C \ ATOM 72 O LEU L 6 29.574 -8.993 -16.728 1.00 67.46 O \ ATOM 73 CB LEU L 6 28.727 -9.427 -19.547 1.00 59.27 C \ ATOM 74 CG LEU L 6 28.489 -8.840 -20.938 1.00 60.19 C \ ATOM 75 CD1 LEU L 6 27.054 -9.074 -21.384 1.00 59.76 C \ ATOM 76 CD2 LEU L 6 28.809 -7.353 -20.971 1.00 59.42 C \ ATOM 77 N PHE L 7 31.001 -10.686 -17.154 1.00 61.81 N \ ATOM 78 CA PHE L 7 31.005 -11.121 -15.766 1.00 63.20 C \ ATOM 79 C PHE L 7 32.428 -11.165 -15.215 1.00 67.99 C \ ATOM 80 O PHE L 7 32.850 -10.208 -14.570 1.00 74.20 O \ ATOM 81 CB PHE L 7 30.119 -12.357 -15.577 1.00 63.24 C \ ATOM 82 CG PHE L 7 28.647 -12.056 -15.714 1.00 62.91 C \ ATOM 83 CD1 PHE L 7 27.906 -11.618 -14.625 1.00 62.25 C \ ATOM 84 CD2 PHE L 7 28.014 -12.137 -16.947 1.00 61.47 C \ ATOM 85 CE1 PHE L 7 26.562 -11.303 -14.759 1.00 59.18 C \ ATOM 86 CE2 PHE L 7 26.670 -11.821 -17.080 1.00 59.10 C \ ATOM 87 CZ PHE L 7 25.945 -11.407 -15.986 1.00 58.72 C \ ATOM 88 N GLU L 8 33.156 -12.262 -15.478 1.00 67.19 N \ ATOM 89 CA GLU L 8 34.510 -12.437 -14.966 1.00 63.96 C \ ATOM 90 C GLU L 8 35.397 -11.292 -15.448 1.00 63.82 C \ ATOM 91 O GLU L 8 36.082 -10.669 -14.645 1.00 66.51 O \ ATOM 92 CB GLU L 8 35.110 -13.782 -15.387 1.00 60.96 C \ ATOM 93 CG GLU L 8 34.569 -14.984 -14.635 1.00 58.26 C \ ATOM 94 CD GLU L 8 33.072 -15.216 -14.754 1.00 58.93 C \ ATOM 95 OE1 GLU L 8 32.517 -15.008 -15.858 1.00 55.78 O \ ATOM 96 OE2 GLU L 8 32.470 -15.623 -13.748 1.00 58.72 O \ ATOM 97 N LYS L 9 35.344 -11.011 -16.757 1.00 65.63 N \ ATOM 98 CA LYS L 9 36.158 -9.995 -17.406 1.00 66.55 C \ ATOM 99 C LYS L 9 35.838 -8.592 -16.892 1.00 66.26 C \ ATOM 100 O LYS L 9 36.431 -7.627 -17.363 1.00 67.45 O \ ATOM 101 CB LYS L 9 35.947 -10.020 -18.925 1.00 70.22 C \ ATOM 102 CG LYS L 9 37.041 -10.682 -19.754 1.00 74.87 C \ ATOM 103 CD LYS L 9 37.110 -12.189 -19.629 1.00 79.18 C \ ATOM 104 CE LYS L 9 38.027 -12.821 -20.656 1.00 83.73 C \ ATOM 105 NZ LYS L 9 37.486 -12.699 -22.033 1.00 85.44 N \ ATOM 106 N LYS L 10 34.898 -8.470 -15.948 1.00 66.76 N \ ATOM 107 CA LYS L 10 34.564 -7.171 -15.381 1.00 68.84 C \ ATOM 108 C LYS L 10 34.485 -7.263 -13.858 1.00 72.97 C \ ATOM 109 O LYS L 10 34.110 -6.295 -13.198 1.00 76.32 O \ ATOM 110 CB LYS L 10 33.267 -6.625 -15.988 1.00 67.48 C \ ATOM 111 CG LYS L 10 33.414 -6.026 -17.380 1.00 69.83 C \ ATOM 112 CD LYS L 10 32.106 -5.621 -18.030 1.00 71.86 C \ ATOM 113 CE LYS L 10 31.523 -4.331 -17.492 1.00 75.00 C \ ATOM 114 NZ LYS L 10 30.367 -3.884 -18.307 1.00 70.75 N \ ATOM 115 N SER L 11 34.849 -8.432 -13.317 1.00 72.70 N \ ATOM 116 CA SER L 11 34.770 -8.709 -11.892 1.00 75.54 C \ ATOM 117 C SER L 11 33.371 -8.395 -11.359 1.00 80.58 C \ ATOM 118 O SER L 11 33.232 -7.804 -10.288 1.00 86.17 O \ ATOM 119 CB SER L 11 35.838 -7.968 -11.132 1.00 73.37 C \ ATOM 120 OG SER L 11 37.117 -8.239 -11.679 1.00 72.95 O \ ATOM 121 N LEU L 12 32.349 -8.790 -12.133 1.00 78.36 N \ ATOM 122 CA LEU L 12 30.954 -8.773 -11.712 1.00 75.88 C \ ATOM 123 C LEU L 12 30.453 -10.214 -11.595 1.00 75.39 C \ ATOM 124 O LEU L 12 30.934 -11.105 -12.298 1.00 76.08 O \ ATOM 125 CB LEU L 12 30.136 -7.976 -12.737 1.00 76.55 C \ ATOM 126 CG LEU L 12 30.274 -6.453 -12.682 1.00 75.12 C \ ATOM 127 CD1 LEU L 12 29.756 -5.808 -13.963 1.00 69.13 C \ ATOM 128 CD2 LEU L 12 29.537 -5.884 -11.476 1.00 76.47 C \ ATOM 129 N GLU L 13 29.493 -10.432 -10.689 1.00 72.25 N \ ATOM 130 CA GLU L 13 28.892 -11.743 -10.484 1.00 74.99 C \ ATOM 131 C GLU L 13 27.448 -11.733 -10.982 1.00 76.45 C \ ATOM 132 O GLU L 13 26.794 -10.691 -10.967 1.00 80.10 O \ ATOM 133 CB GLU L 13 28.843 -12.085 -8.995 1.00 75.58 C \ ATOM 134 CG GLU L 13 30.181 -12.411 -8.366 1.00 76.71 C \ ATOM 135 CD GLU L 13 30.048 -12.759 -6.892 1.00 81.54 C \ ATOM 136 OE1 GLU L 13 28.932 -12.609 -6.348 1.00 81.61 O \ ATOM 137 OE2 GLU L 13 31.052 -13.190 -6.291 1.00 88.10 O \ ATOM 138 N ASP L 14 26.952 -12.908 -11.400 1.00 73.36 N \ ATOM 139 CA ASP L 14 25.547 -13.063 -11.751 1.00 70.98 C \ ATOM 140 C ASP L 14 24.743 -13.307 -10.475 1.00 70.00 C \ ATOM 141 O ASP L 14 25.305 -13.685 -9.449 1.00 69.96 O \ ATOM 142 CB ASP L 14 25.328 -14.088 -12.870 1.00 70.42 C \ ATOM 143 CG ASP L 14 25.712 -15.515 -12.513 1.00 72.05 C \ ATOM 144 OD1 ASP L 14 25.109 -16.066 -11.570 1.00 75.59 O \ ATOM 145 OD2 ASP L 14 26.598 -16.071 -13.191 1.00 69.74 O \ ATOM 146 N LYS L 14A 23.422 -13.109 -10.559 1.00 68.55 N \ ATOM 147 CA LYS L 14A 22.614 -12.890 -9.371 1.00 69.51 C \ ATOM 148 C LYS L 14A 22.412 -14.188 -8.586 1.00 67.47 C \ ATOM 149 O LYS L 14A 21.816 -14.157 -7.512 1.00 67.86 O \ ATOM 150 CB LYS L 14A 21.299 -12.186 -9.730 1.00 74.32 C \ ATOM 151 CG LYS L 14A 20.200 -13.112 -10.238 1.00 89.63 C \ ATOM 152 CD LYS L 14A 18.961 -12.415 -10.778 1.00 95.83 C \ ATOM 153 CE LYS L 14A 17.837 -13.381 -11.101 1.00 96.39 C \ ATOM 154 NZ LYS L 14A 18.281 -14.493 -11.981 1.00 94.45 N \ ATOM 155 N THR L 14B 22.907 -15.322 -9.109 1.00 66.64 N \ ATOM 156 CA THR L 14B 22.750 -16.600 -8.421 1.00 67.37 C \ ATOM 157 C THR L 14B 24.055 -17.397 -8.440 1.00 66.77 C \ ATOM 158 O THR L 14B 24.052 -18.607 -8.226 1.00 65.65 O \ ATOM 159 CB THR L 14B 21.612 -17.455 -9.004 1.00 66.09 C \ ATOM 160 OG1 THR L 14B 22.092 -18.221 -10.112 1.00 63.90 O \ ATOM 161 CG2 THR L 14B 20.379 -16.665 -9.390 1.00 66.02 C \ ATOM 162 N GLU L 14C 25.170 -16.704 -8.680 1.00 69.97 N \ ATOM 163 CA GLU L 14C 26.460 -17.346 -8.874 1.00 72.15 C \ ATOM 164 C GLU L 14C 26.961 -17.952 -7.562 1.00 73.92 C \ ATOM 165 O GLU L 14C 27.377 -19.109 -7.541 1.00 71.60 O \ ATOM 166 CB GLU L 14C 27.445 -16.313 -9.413 1.00 71.46 C \ ATOM 167 CG GLU L 14C 28.702 -16.913 -9.993 1.00 73.82 C \ ATOM 168 CD GLU L 14C 29.740 -15.846 -10.281 1.00 76.66 C \ ATOM 169 OE1 GLU L 14C 29.434 -14.908 -11.048 1.00 75.53 O \ ATOM 170 OE2 GLU L 14C 30.843 -15.947 -9.718 1.00 80.33 O \ ATOM 171 N ARG L 14D 26.908 -17.156 -6.482 1.00 77.08 N \ ATOM 172 CA ARG L 14D 27.416 -17.524 -5.168 1.00 76.60 C \ ATOM 173 C ARG L 14D 26.790 -18.827 -4.685 1.00 73.51 C \ ATOM 174 O ARG L 14D 27.404 -19.546 -3.902 1.00 73.00 O \ ATOM 175 CB ARG L 14D 27.099 -16.447 -4.128 1.00 85.33 C \ ATOM 176 CG ARG L 14D 28.210 -15.429 -3.915 1.00 98.29 C \ ATOM 177 CD ARG L 14D 28.174 -14.925 -2.482 1.00108.16 C \ ATOM 178 NE ARG L 14D 29.257 -14.005 -2.147 1.00119.10 N \ ATOM 179 CZ ARG L 14D 29.280 -12.706 -2.439 1.00124.04 C \ ATOM 180 NH1 ARG L 14D 28.241 -12.131 -3.022 1.00125.28 N \ ATOM 181 NH2 ARG L 14D 30.341 -11.979 -2.125 1.00123.53 N \ ATOM 182 N GLU L 14E 25.562 -19.095 -5.146 1.00 71.31 N \ ATOM 183 CA GLU L 14E 24.777 -20.261 -4.771 1.00 67.43 C \ ATOM 184 C GLU L 14E 25.560 -21.537 -5.088 1.00 65.32 C \ ATOM 185 O GLU L 14E 25.523 -22.502 -4.323 1.00 62.98 O \ ATOM 186 CB GLU L 14E 23.450 -20.204 -5.527 1.00 68.39 C \ ATOM 187 CG GLU L 14E 22.323 -20.988 -4.885 1.00 74.15 C \ ATOM 188 CD GLU L 14E 21.016 -20.923 -5.661 1.00 79.99 C \ ATOM 189 OE1 GLU L 14E 20.582 -19.796 -6.010 1.00 78.84 O \ ATOM 190 OE2 GLU L 14E 20.429 -21.999 -5.914 1.00 81.00 O \ ATOM 191 N LEU L 14F 26.280 -21.511 -6.219 1.00 62.51 N \ ATOM 192 CA LEU L 14F 27.101 -22.617 -6.688 1.00 61.03 C \ ATOM 193 C LEU L 14F 28.358 -22.736 -5.830 1.00 60.88 C \ ATOM 194 O LEU L 14F 28.708 -23.832 -5.395 1.00 58.55 O \ ATOM 195 CB LEU L 14F 27.486 -22.364 -8.151 1.00 57.77 C \ ATOM 196 CG LEU L 14F 26.323 -22.213 -9.128 1.00 54.01 C \ ATOM 197 CD1 LEU L 14F 26.840 -21.885 -10.514 1.00 51.68 C \ ATOM 198 CD2 LEU L 14F 25.483 -23.477 -9.170 1.00 52.62 C \ ATOM 199 N LEU L 14G 29.037 -21.598 -5.627 1.00 63.81 N \ ATOM 200 CA LEU L 14G 30.260 -21.530 -4.840 1.00 67.11 C \ ATOM 201 C LEU L 14G 30.001 -22.077 -3.438 1.00 66.30 C \ ATOM 202 O LEU L 14G 30.782 -22.885 -2.943 1.00 65.12 O \ ATOM 203 CB LEU L 14G 30.778 -20.086 -4.807 1.00 71.38 C \ ATOM 204 CG LEU L 14G 31.566 -19.609 -6.033 1.00 79.41 C \ ATOM 205 CD1 LEU L 14G 32.651 -20.601 -6.432 1.00 82.71 C \ ATOM 206 CD2 LEU L 14G 30.662 -19.302 -7.221 1.00 80.32 C \ ATOM 207 N GLU L 14H 28.875 -21.668 -2.838 1.00 67.28 N \ ATOM 208 CA GLU L 14H 28.499 -22.067 -1.489 1.00 68.88 C \ ATOM 209 C GLU L 14H 28.156 -23.553 -1.436 1.00 67.95 C \ ATOM 210 O GLU L 14H 28.227 -24.159 -0.371 1.00 70.62 O \ ATOM 211 CB GLU L 14H 27.350 -21.211 -0.955 1.00 69.33 C \ ATOM 212 CG GLU L 14H 27.762 -19.784 -0.647 1.00 77.53 C \ ATOM 213 CD GLU L 14H 26.608 -18.817 -0.438 1.00 85.54 C \ ATOM 214 OE1 GLU L 14H 25.451 -19.281 -0.358 1.00 86.43 O \ ATOM 215 OE2 GLU L 14H 26.868 -17.595 -0.380 1.00 91.61 O \ ATOM 216 N SER L 14I 27.793 -24.136 -2.583 1.00 67.57 N \ ATOM 217 CA SER L 14I 27.518 -25.563 -2.635 1.00 69.77 C \ ATOM 218 C SER L 14I 28.806 -26.356 -2.424 1.00 67.54 C \ ATOM 219 O SER L 14I 28.750 -27.492 -1.956 1.00 62.07 O \ ATOM 220 CB SER L 14I 26.832 -25.967 -3.923 1.00 75.11 C \ ATOM 221 OG SER L 14I 27.774 -26.284 -4.944 1.00 76.10 O \ ATOM 222 N TYR L 14J 29.949 -25.743 -2.771 1.00 67.30 N \ ATOM 223 CA TYR L 14J 31.231 -26.433 -2.803 1.00 74.08 C \ ATOM 224 C TYR L 14J 31.831 -26.577 -1.405 1.00 77.73 C \ ATOM 225 O TYR L 14J 32.818 -27.292 -1.238 1.00 76.66 O \ ATOM 226 CB TYR L 14J 32.219 -25.739 -3.744 1.00 80.37 C \ ATOM 227 CG TYR L 14J 31.809 -25.674 -5.194 1.00 88.61 C \ ATOM 228 CD1 TYR L 14J 31.459 -26.815 -5.901 1.00 90.78 C \ ATOM 229 CD2 TYR L 14J 31.802 -24.464 -5.873 1.00 88.39 C \ ATOM 230 CE1 TYR L 14J 31.087 -26.749 -7.236 1.00 95.73 C \ ATOM 231 CE2 TYR L 14J 31.437 -24.383 -7.207 1.00 90.06 C \ ATOM 232 CZ TYR L 14J 31.078 -25.530 -7.893 1.00 93.62 C \ ATOM 233 OH TYR L 14J 30.708 -25.445 -9.217 1.00 91.27 O \ ATOM 234 N ILE L 14K 31.210 -25.924 -0.411 1.00 83.36 N \ ATOM 235 CA ILE L 14K 31.723 -25.821 0.949 1.00 81.69 C \ ATOM 236 C ILE L 14K 31.771 -27.183 1.647 1.00 87.74 C \ ATOM 237 O ILE L 14K 32.592 -27.375 2.542 1.00 96.52 O \ ATOM 238 CB ILE L 14K 30.957 -24.753 1.758 1.00 78.07 C \ ATOM 239 CG1 ILE L 14K 31.221 -23.337 1.232 1.00 76.57 C \ ATOM 240 CG2 ILE L 14K 31.269 -24.863 3.241 1.00 77.91 C \ ATOM 241 CD1 ILE L 14K 32.687 -22.953 1.148 1.00 73.15 C \ ATOM 242 N ASP L 14L 30.907 -28.125 1.245 1.00 89.39 N \ ATOM 243 CA ASP L 14L 30.992 -29.486 1.758 1.00 91.74 C \ ATOM 244 C ASP L 14L 31.143 -30.489 0.609 1.00 95.95 C \ ATOM 245 O ASP L 14L 31.271 -31.692 0.925 1.00 99.32 O \ ATOM 246 CB ASP L 14L 29.818 -29.833 2.674 1.00 94.28 C \ ATOM 247 CG ASP L 14L 30.030 -29.355 4.099 1.00100.81 C \ ATOM 248 OD1 ASP L 14L 31.108 -28.788 4.377 1.00 96.67 O \ ATOM 249 OD2 ASP L 14L 29.118 -29.562 4.921 1.00110.37 O \ TER 250 ASP L 14L \ TER 2344 GLU H 247 \ TER 3191 DC F 40 \ CONECT 38 1236 \ CONECT 469 587 \ CONECT 581 3327 \ CONECT 587 469 \ CONECT 668 3192 \ CONECT 1236 38 \ CONECT 1645 1761 \ CONECT 1761 1645 \ CONECT 1862 2095 \ CONECT 1889 3318 \ CONECT 2095 1862 \ CONECT 2107 3328 \ CONECT 2130 3328 \ CONECT 2632 3329 \ CONECT 2654 3329 \ CONECT 2717 3329 \ CONECT 2739 3329 \ CONECT 2805 3329 \ CONECT 2827 3329 \ CONECT 2889 3329 \ CONECT 2911 3329 \ CONECT 3192 668 3193 3203 \ CONECT 3193 3192 3194 3200 \ CONECT 3194 3193 3195 3201 \ CONECT 3195 3194 3196 3202 \ CONECT 3196 3195 3197 3203 \ CONECT 3197 3196 3204 \ CONECT 3198 3199 3200 3205 \ CONECT 3199 3198 \ CONECT 3200 3193 3198 \ CONECT 3201 3194 \ CONECT 3202 3195 3206 \ CONECT 3203 3192 3196 \ CONECT 3204 3197 \ CONECT 3205 3198 \ CONECT 3206 3202 3207 3217 \ CONECT 3207 3206 3208 3214 \ CONECT 3208 3207 3209 3215 \ CONECT 3209 3208 3210 3216 \ CONECT 3210 3209 3211 3217 \ CONECT 3211 3210 3218 \ CONECT 3212 3213 3214 3219 \ CONECT 3213 3212 \ CONECT 3214 3207 3212 \ CONECT 3215 3208 \ CONECT 3216 3209 3220 \ CONECT 3217 3206 3210 \ CONECT 3218 3211 \ CONECT 3219 3212 \ CONECT 3220 3216 3221 3229 \ CONECT 3221 3220 3222 3226 \ CONECT 3222 3221 3223 3227 \ CONECT 3223 3222 3224 3228 \ CONECT 3224 3223 3225 3229 \ CONECT 3225 3224 3230 \ CONECT 3226 3221 \ CONECT 3227 3222 3287 \ CONECT 3228 3223 \ CONECT 3229 3220 3224 \ CONECT 3230 3225 3231 \ CONECT 3231 3230 3232 3240 \ CONECT 3232 3231 3233 3237 \ CONECT 3233 3232 3234 3238 \ CONECT 3234 3233 3235 3239 \ CONECT 3235 3234 3236 3240 \ CONECT 3236 3235 3241 \ CONECT 3237 3232 3242 \ CONECT 3238 3233 \ CONECT 3239 3234 \ CONECT 3240 3231 3235 \ CONECT 3241 3236 \ CONECT 3242 3237 3243 3253 \ CONECT 3243 3242 3244 3250 \ CONECT 3244 3243 3245 3251 \ CONECT 3245 3244 3246 3252 \ CONECT 3246 3245 3247 3253 \ CONECT 3247 3246 3254 \ CONECT 3248 3249 3250 3255 \ CONECT 3249 3248 \ CONECT 3250 3243 3248 \ CONECT 3251 3244 \ CONECT 3252 3245 3256 \ CONECT 3253 3242 3246 \ CONECT 3254 3247 \ CONECT 3255 3248 \ CONECT 3256 3252 3257 3265 \ CONECT 3257 3256 3258 3262 \ CONECT 3258 3257 3259 3263 \ CONECT 3259 3258 3260 3264 \ CONECT 3260 3259 3261 3265 \ CONECT 3261 3260 3266 \ CONECT 3262 3257 \ CONECT 3263 3258 \ CONECT 3264 3259 \ CONECT 3265 3256 3260 \ CONECT 3266 3261 3268 \ CONECT 3267 3268 3279 3280 \ CONECT 3268 3266 3267 3269 3282 \ CONECT 3269 3268 3270 \ CONECT 3270 3269 3271 3281 \ CONECT 3271 3270 3272 3278 \ CONECT 3272 3271 3273 3282 \ CONECT 3273 3272 3274 3283 \ CONECT 3274 3273 3275 3284 \ CONECT 3275 3274 3285 \ CONECT 3276 3277 3278 3286 \ CONECT 3277 3276 \ CONECT 3278 3271 3276 \ CONECT 3279 3267 \ CONECT 3280 3267 \ CONECT 3281 3270 \ CONECT 3282 3268 3272 \ CONECT 3283 3273 \ CONECT 3284 3274 \ CONECT 3285 3275 \ CONECT 3286 3276 \ CONECT 3287 3227 3288 3296 \ CONECT 3288 3287 3289 3293 \ CONECT 3289 3288 3290 3294 \ CONECT 3290 3289 3291 3295 \ CONECT 3291 3290 3292 3296 \ CONECT 3292 3291 3297 \ CONECT 3293 3288 \ CONECT 3294 3289 \ CONECT 3295 3290 \ CONECT 3296 3287 3291 \ CONECT 3297 3292 \ CONECT 3298 3299 \ CONECT 3299 3298 3300 3302 \ CONECT 3300 3299 3301 3309 \ CONECT 3301 3300 \ CONECT 3302 3299 3303 \ CONECT 3303 3302 3304 3305 \ CONECT 3304 3303 3306 \ CONECT 3305 3303 3307 \ CONECT 3306 3304 3308 \ CONECT 3307 3305 3308 \ CONECT 3308 3306 3307 \ CONECT 3309 3300 3310 3315 \ CONECT 3310 3309 3311 3313 \ CONECT 3311 3310 3312 3316 \ CONECT 3312 3311 \ CONECT 3313 3310 3314 \ CONECT 3314 3313 3315 \ CONECT 3315 3309 3314 \ CONECT 3316 3311 3317 \ CONECT 3317 3316 3318 3320 \ CONECT 3318 1889 3317 3319 3327 \ CONECT 3319 3318 \ CONECT 3320 3317 3321 \ CONECT 3321 3320 3322 \ CONECT 3322 3321 3323 \ CONECT 3323 3322 3324 \ CONECT 3324 3323 3325 3326 \ CONECT 3325 3324 \ CONECT 3326 3324 \ CONECT 3327 581 3318 \ CONECT 3328 2107 2130 3331 \ CONECT 3329 2632 2654 2717 2739 \ CONECT 3329 2805 2827 2889 2911 \ CONECT 3331 3328 \ MASTER 338 0 11 9 16 0 0 6 3347 3 161 27 \ END \ """, "8bw5chainL") cmd.hide("all") cmd.color('grey70', "8bw5chainL") cmd.show('cartoon', "8bw5chainL") cmd.center("8bw5chainL", state=0, origin=1) cmd.zoom("8bw5chainL", animate=-1) cmd.select("e8bw5L1", "c. L & i. 1E-14L") cmd.color("red", "e8bw5L1") cmd.disable("e8bw5L1")