cmd.read_pdbstr("""\ HEADER PROTEIN BINDING 27-JUN-13 3J47 \ TITLE FORMATION OF AN INTRICATE HELICAL BUNDLE DICTATES THE ASSEMBLY OF THE \ TITLE 2 26S PROTEASOME LID \ COMPND MOL_ID: 1; \ COMPND 2 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN11; \ COMPND 3 CHAIN: V; \ COMPND 4 FRAGMENT: LAST THREE C-TERMINAL HELICES (UNP RESIDUES 230-298); \ COMPND 5 SYNONYM: PROTEIN MPR1; \ COMPND 6 MOL_ID: 2; \ COMPND 7 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN8; \ COMPND 8 CHAIN: U; \ COMPND 9 FRAGMENT: LAST THREE C-TERMINAL HELICES (UNP RESIDUES 188-308); \ COMPND 10 MOL_ID: 3; \ COMPND 11 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN9; \ COMPND 12 CHAIN: O; \ COMPND 13 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 360-387); \ COMPND 14 SYNONYM: PROTEASOME NON-ATPASE SUBUNIT 7; \ COMPND 15 MOL_ID: 4; \ COMPND 16 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN5; \ COMPND 17 CHAIN: P; \ COMPND 18 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 409-442); \ COMPND 19 SYNONYM: PROTEASOME NON-ATPASE SUBUNIT 5; \ COMPND 20 MOL_ID: 5; \ COMPND 21 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN6; \ COMPND 22 CHAIN: Q; \ COMPND 23 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 407-431); \ COMPND 24 SYNONYM: PROTEASOME NON-ATPASE SUBUNIT 4; \ COMPND 25 MOL_ID: 6; \ COMPND 26 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN7; \ COMPND 27 CHAIN: R; \ COMPND 28 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 397-422); \ COMPND 29 MOL_ID: 7; \ COMPND 30 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN3; \ COMPND 31 CHAIN: S; \ COMPND 32 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 455-478); \ COMPND 33 MOL_ID: 8; \ COMPND 34 MOLECULE: 26S PROTEASOME REGULATORY SUBUNIT RPN12; \ COMPND 35 CHAIN: T; \ COMPND 36 FRAGMENT: C-TERMINAL HELIX (UNP RESIDUES 256-272); \ COMPND 37 SYNONYM: NUCLEAR INTEGRITY PROTEIN 1 \ SOURCE MOL_ID: 1; \ SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 4 ORGANISM_TAXID: 559292; \ SOURCE 5 STRAIN: ATCC 204508 / S288C; \ SOURCE 6 MOL_ID: 2; \ SOURCE 7 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 8 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 9 ORGANISM_TAXID: 559292; \ SOURCE 10 STRAIN: ATCC 204508 / S288C; \ SOURCE 11 MOL_ID: 3; \ SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 13 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 14 ORGANISM_TAXID: 559292; \ SOURCE 15 STRAIN: ATCC 204508 / S288C; \ SOURCE 16 MOL_ID: 4; \ SOURCE 17 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 18 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 19 ORGANISM_TAXID: 559292; \ SOURCE 20 STRAIN: ATCC 204508 / S288C; \ SOURCE 21 MOL_ID: 5; \ SOURCE 22 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 23 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 24 ORGANISM_TAXID: 559292; \ SOURCE 25 STRAIN: ATCC 204508 / S288C; \ SOURCE 26 MOL_ID: 6; \ SOURCE 27 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 28 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 29 ORGANISM_TAXID: 559292; \ SOURCE 30 STRAIN: ATCC 204508 / S288C; \ SOURCE 31 MOL_ID: 7; \ SOURCE 32 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 33 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 34 ORGANISM_TAXID: 559292; \ SOURCE 35 STRAIN: ATCC 204508 / S288C; \ SOURCE 36 MOL_ID: 8; \ SOURCE 37 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; \ SOURCE 38 ORGANISM_COMMON: BAKER'S YEAST; \ SOURCE 39 ORGANISM_TAXID: 559292; \ SOURCE 40 STRAIN: ATCC 204508 / S288C \ KEYWDS ALPHA HELIX BUNDLE, HYBRID METHOD, FLEXIBLE FITTING, PROTEIN BINDING \ EXPDTA ELECTRON MICROSCOPY \ AUTHOR E.ESTRIN,J.R.LOPEZ-BLANCO,P.CHACON,A.MARTIN \ REVDAT 5 21-FEB-24 3J47 1 REMARK \ REVDAT 4 18-JUL-18 3J47 1 REMARK \ REVDAT 3 02-OCT-13 3J47 1 REMARK \ REVDAT 2 25-SEP-13 3J47 1 JRNL \ REVDAT 1 28-AUG-13 3J47 0 \ JRNL AUTH E.ESTRIN,J.R.LOPEZ-BLANCO,P.CHACON,A.MARTIN \ JRNL TITL FORMATION OF AN INTRICATE HELICAL BUNDLE DICTATES THE \ JRNL TITL 2 ASSEMBLY OF THE 26S PROTEASOME LID. \ JRNL REF STRUCTURE V. 21 1624 2013 \ JRNL REFN ISSN 0969-2126 \ JRNL PMID 23911091 \ JRNL DOI 10.1016/J.STR.2013.06.023 \ REMARK 0 \ REMARK 0 THIS ENTRY 3J47 CONTAINS A STRUCTURAL MODEL FIT TO AN ELECTRON \ REMARK 0 MICROSCOPY MAP (EMD-2165) DETERMINED ORIGINALLY BY AUTHORS: \ REMARK 0 F.BECK, P.UNVERDORBEN, S.BOHN, A.SCHWEITZER, G.PFEIFER, E.SAKATA, \ REMARK 0 S.NICKELL, J.M.PLITZKO, E.VILLA, W.BAUMEISTER, F.FORSTER \ REMARK 0 ORIGINAL DATA REFERENCE 1 \ REMARK 0 AUTH F.BECK,P.UNVERDORBEN,S.BOHN,A.SCHWEITZER,G.PFEIFER,E.SAKATA, \ REMARK 0 AUTH 2 S.NICKELL,J.M.PLITZKO,E.VILLA,W.BAUMEISTER,F.FORSTER \ REMARK 0 TITL NEAR-ATOMIC RESOLUTION STRUCTURAL MODEL OF THE YEAST 26S \ REMARK 0 TITL 2 PROTEASOME. \ REMARK 0 REF PROC.NATL.ACAD.SCI.USA V. 109 14870 2012 \ REMARK 0 REFN ISSN 0027-8424 \ REMARK 0 PMID 22927375 \ REMARK 0 DOI 10.1073/PNAS.1213333109 \ REMARK 2 \ REMARK 2 RESOLUTION. 7.40 ANGSTROMS. \ REMARK 3 \ REMARK 3 REFINEMENT. \ REMARK 3 SOFTWARE PACKAGES : EMTEGRATOR, IMODFIT, VOLTRAC \ REMARK 3 RECONSTRUCTION SCHEMA : NULL \ REMARK 3 \ REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT \ REMARK 3 PDB ENTRY : NULL \ REMARK 3 REFINEMENT SPACE : REAL \ REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT \ REMARK 3 REFINEMENT TARGET : CROSS-CORRELATION COEFFICIENT \ REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL \ REMARK 3 \ REMARK 3 FITTING PROCEDURE : METHOD--HYBRID METHOD + FLEXIBLE FITTING \ REMARK 3 REFINEMENT PROTOCOL--HYBRID METHOD DETAILS--INITIAL MODEL WAS \ REMARK 3 DONE WITH AN IN HOUSE HYBRID METHOD (EMTEGRATOR) THAT INTEGRATES \ REMARK 3 TOPOLOGY CONSTRAINTS WITH EM-MAP DERIVED CONSTRAINTS. IMODFIT \ REMARK 3 WAS THEN USED FOR FINAL FLEXIBLE FITTING. \ REMARK 3 \ REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS \ REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL \ REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.400 \ REMARK 3 NUMBER OF PARTICLES : 246469 \ REMARK 3 CTF CORRECTION METHOD : NULL \ REMARK 3 \ REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL \ REMARK 3 \ REMARK 3 OTHER DETAILS: NULL \ REMARK 4 \ REMARK 4 3J47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 \ REMARK 100 \ REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-13. \ REMARK 100 THE DEPOSITION ID IS D_1000160229. \ REMARK 245 \ REMARK 245 EXPERIMENTAL DETAILS \ REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE \ REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) \ REMARK 245 \ REMARK 245 ELECTRON MICROSCOPE SAMPLE \ REMARK 245 SAMPLE TYPE : PARTICLE \ REMARK 245 PARTICLE TYPE : POINT \ REMARK 245 NAME OF SAMPLE : 26S PROTEASOME \ REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL \ REMARK 245 SAMPLE SUPPORT DETAILS : NULL \ REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL \ REMARK 245 SAMPLE BUFFER : NULL \ REMARK 245 PH : 7.10 \ REMARK 245 SAMPLE DETAILS : NULL \ REMARK 245 \ REMARK 245 DATA ACQUISITION \ REMARK 245 DATE OF EXPERIMENT : 15-MAR-12 \ REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL \ REMARK 245 TEMPERATURE (KELVIN) : NULL \ REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS \ REMARK 245 DETECTOR TYPE : TVIPS TEMCAM-F816 (8K X 8K) \ REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 \ REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 \ REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL \ REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL \ REMARK 245 NOMINAL CS : NULL \ REMARK 245 IMAGING MODE : BRIGHT FIELD \ REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2500.00 \ REMARK 245 ILLUMINATION MODE : FLOOD BEAM \ REMARK 245 NOMINAL MAGNIFICATION : 150000 \ REMARK 245 CALIBRATED MAGNIFICATION : NULL \ REMARK 245 SOURCE : FIELD EMISSION GUN \ REMARK 245 ACCELERATION VOLTAGE (KV) : 200 \ REMARK 245 IMAGING DETAILS : NULL \ REMARK 247 \ REMARK 247 ELECTRON MICROSCOPY \ REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON \ REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE \ REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES \ REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION \ REMARK 247 OF THE STRUCTURE FACTORS. \ REMARK 300 \ REMARK 300 BIOMOLECULE: 1 \ REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM \ REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN \ REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON \ REMARK 300 BURIED SURFACE AREA. \ REMARK 350 \ REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN \ REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE \ REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS \ REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND \ REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. \ REMARK 350 \ REMARK 350 BIOMOLECULE: 1 \ REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC \ REMARK 350 APPLY THE FOLLOWING TO CHAINS: V, U, O, P, Q, R, S, T \ REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 \ REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 \ REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 \ REMARK 465 \ REMARK 465 MISSING RESIDUES \ REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE \ REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) \ REMARK 465 \ REMARK 465 M RES C SSSEQI \ REMARK 465 TYR V 270 \ REMARK 465 VAL V 271 \ REMARK 465 GLY V 272 \ REMARK 465 ARG V 273 \ REMARK 465 GLN V 274 \ REMARK 465 ASP V 275 \ REMARK 465 ASN U 216 \ REMARK 465 LYS U 217 \ REMARK 465 GLU U 218 \ REMARK 465 LEU U 219 \ REMARK 465 PRO U 220 \ REMARK 465 ILE U 221 \ REMARK 465 ASN U 222 \ REMARK 465 LEU U 236 \ REMARK 465 PRO U 237 \ REMARK 465 ASN U 238 \ REMARK 465 LEU U 239 \ REMARK 465 GLY U 240 \ REMARK 465 THR U 241 \ REMARK 465 PRO U 242 \ REMARK 465 ASP U 243 \ REMARK 465 ASP U 244 \ REMARK 465 ASP U 245 \ REMARK 465 GLU U 246 \ REMARK 465 ILE U 247 \ REMARK 465 ASP U 248 \ REMARK 465 VAL U 249 \ REMARK 465 GLU U 250 \ REMARK 465 ASN U 251 \ REMARK 465 HIS U 252 \ REMARK 465 ASP U 253 \ REMARK 465 ARG U 254 \ REMARK 465 ILE U 255 \ REMARK 465 ASN U 256 \ REMARK 465 ILE U 257 \ REMARK 465 SER U 258 \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT \ REMARK 500 \ REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. \ REMARK 500 \ REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE \ REMARK 500 CG1 VAL Q 416 CD1 LEU R 410 0.52 \ REMARK 500 NZ LYS U 228 C THR P 428 0.55 \ REMARK 500 CG ASP U 289 CD1 LEU Q 419 0.55 \ REMARK 500 OE2 GLU V 258 CD2 LEU Q 415 0.56 \ REMARK 500 CG LEU U 291 CD2 TYR S 475 0.60 \ REMARK 500 NZ LYS V 233 CA GLN U 193 0.67 \ REMARK 500 CD1 LEU V 261 C LEU V 280 0.68 \ REMARK 500 C TYR U 277 CE1 PHE S 461 0.68 \ REMARK 500 CD1 ILE U 296 CG LEU Q 426 0.69 \ REMARK 500 CG LEU U 200 CZ3 TRP O 373 0.71 \ REMARK 500 CD1 LEU U 197 CG1 VAL O 377 0.75 \ REMARK 500 O LEU V 261 CG LEU V 280 0.76 \ REMARK 500 NZ LYS V 277 CD GLU U 293 0.77 \ REMARK 500 OD2 ASP U 289 CD1 LEU Q 419 0.78 \ REMARK 500 O LEU V 261 CD2 LEU V 280 0.78 \ REMARK 500 CG2 VAL Q 416 CD2 LEU R 410 0.78 \ REMARK 500 CD1 LEU V 261 O LEU V 280 0.79 \ REMARK 500 NH2 ARG O 387 SD MET T 264 0.80 \ REMARK 500 CE LYS V 277 OE1 GLU U 293 0.83 \ REMARK 500 CE2 TYR U 277 O PHE S 461 0.86 \ REMARK 500 CD1 LEU R 411 CD2 PHE S 467 0.86 \ REMARK 500 CD1 LEU U 291 CE2 TYR S 475 0.88 \ REMARK 500 NZ LYS V 277 CG GLU U 293 0.90 \ REMARK 500 OE1 GLU V 264 N LEU V 280 0.91 \ REMARK 500 NZ LYS U 268 N LEU P 412 0.91 \ REMARK 500 CE1 TYR Q 409 O LEU R 403 0.94 \ REMARK 500 N TYR V 230 CE LYS U 195 0.95 \ REMARK 500 CG1 VAL Q 423 CG TYR R 417 0.97 \ REMARK 500 CG2 VAL U 232 CD2 HIS P 425 0.98 \ REMARK 500 CA LEU V 261 CD1 LEU V 280 0.98 \ REMARK 500 CG1 VAL Q 423 CD1 TYR R 417 0.99 \ REMARK 500 NZ LYS V 233 N GLN U 193 1.01 \ REMARK 500 NE2 GLN R 415 CE1 PHE S 467 1.01 \ REMARK 500 NH2 ARG V 269 CG1 VAL Q 422 1.01 \ REMARK 500 CG TYR U 277 CD2 PHE S 461 1.02 \ REMARK 500 CG TYR U 277 CG PHE S 461 1.03 \ REMARK 500 CA TYR U 277 CZ PHE S 461 1.03 \ REMARK 500 NZ LYS U 228 N ILE P 429 1.03 \ REMARK 500 CZ TYR U 277 O PHE S 461 1.03 \ REMARK 500 CE LYS V 277 CD GLU U 293 1.04 \ REMARK 500 ND2 ASN Q 420 CD LYS R 413 1.06 \ REMARK 500 NH1 ARG V 269 CA VAL Q 422 1.07 \ REMARK 500 CD GLU V 264 O PRO V 276 1.10 \ REMARK 500 CD2 LEU U 204 ND2 ASN O 374 1.10 \ REMARK 500 CA TYR U 277 CE1 PHE S 461 1.11 \ REMARK 500 CG2 VAL U 232 NE2 HIS P 425 1.12 \ REMARK 500 CD LYS V 233 C ASN U 192 1.15 \ REMARK 500 CE LYS V 233 N GLN U 193 1.15 \ REMARK 500 CG TYR Q 409 CD1 LEU R 403 1.17 \ REMARK 500 O LEU U 291 CZ TYR S 475 1.19 \ REMARK 500 \ REMARK 500 THIS ENTRY HAS 320 CLOSE CONTACTS \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 500 \ REMARK 500 GEOMETRY AND STEREOCHEMISTRY \ REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS \ REMARK 500 \ REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES \ REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE \ REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN \ REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). \ REMARK 500 \ REMARK 500 STANDARD TABLE: \ REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) \ REMARK 500 \ REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 \ REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 \ REMARK 500 \ REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION \ REMARK 500 LEU V 238 C ALA V 239 N 0.162 \ REMARK 500 ALA V 239 N ALA V 239 CA -0.283 \ REMARK 500 PRO V 276 CD PRO V 276 N 0.161 \ REMARK 500 TRP O 373 CE2 TRP O 373 CD2 -0.080 \ REMARK 500 ALA Q 407 N ALA Q 407 CA -0.148 \ REMARK 500 PRO S 457 CD PRO S 457 N 0.221 \ REMARK 500 \ REMARK 500 REMARK: NULL \ REMARK 900 \ REMARK 900 RELATED ENTRIES \ REMARK 900 RELATED ID: EMD-2165 RELATED DB: EMDB \ REMARK 900 26S YEAST PROTEASOME \ REMARK 900 RELATED ID: 4B4T RELATED DB: PDB \ REMARK 900 26S YEAST PROTEASOME FLEXIBLY FITTED MODEL \ DBREF 3J47 V 230 298 UNP P43588 RPN11_YEAST 230 298 \ DBREF 3J47 U 188 308 UNP Q08723 RPN8_YEAST 188 308 \ DBREF 3J47 O 360 387 UNP Q04062 RPN9_YEAST 360 387 \ DBREF 3J47 P 409 442 UNP Q12250 RPN5_YEAST 409 442 \ DBREF 3J47 Q 407 431 UNP Q12377 RPN6_YEAST 407 431 \ DBREF 3J47 R 397 422 UNP Q06103 RPN7_YEAST 397 422 \ DBREF 3J47 S 455 478 UNP P40016 RPN3_YEAST 455 478 \ DBREF 3J47 T 256 272 UNP P32496 RPN12_YEAST 256 272 \ SEQRES 1 V 69 TYR GLU GLU LYS GLU GLU SER ASN LEU ALA ALA THR LYS \ SEQRES 2 V 69 SER MET VAL LYS ILE ALA GLU GLN TYR SER LYS ARG ILE \ SEQRES 3 V 69 GLU GLU GLU LYS GLU LEU THR GLU GLU GLU LEU LYS THR \ SEQRES 4 V 69 ARG TYR VAL GLY ARG GLN ASP PRO LYS LYS HIS LEU SER \ SEQRES 5 V 69 GLU THR ALA ASP GLU THR LEU GLU ASN ASN ILE VAL SER \ SEQRES 6 V 69 VAL LEU THR ALA \ SEQRES 1 U 121 ILE ARG LEU THR ASN GLN LEU LYS SER LEU LYS GLY LEU \ SEQRES 2 U 121 GLN SER LYS LEU LYS ASP VAL VAL GLU TYR LEU ASP LYS \ SEQRES 3 U 121 VAL ILE ASN LYS GLU LEU PRO ILE ASN HIS THR ILE LEU \ SEQRES 4 U 121 GLY LYS LEU GLN ASP VAL PHE ASN LEU LEU PRO ASN LEU \ SEQRES 5 U 121 GLY THR PRO ASP ASP ASP GLU ILE ASP VAL GLU ASN HIS \ SEQRES 6 U 121 ASP ARG ILE ASN ILE SER ASN ASN LEU GLN LYS ALA LEU \ SEQRES 7 U 121 THR VAL LYS THR ASN ASP GLU LEU MET VAL ILE TYR ILE \ SEQRES 8 U 121 SER ASN LEU VAL ARG SER ILE ILE ALA PHE ASP ASP LEU \ SEQRES 9 U 121 ILE GLU ASN LYS ILE GLN ASN LYS LYS ILE GLN GLU GLN \ SEQRES 10 U 121 ARG VAL LYS ASP \ SEQRES 1 O 28 GLY ASP GLN ILE THR LYS MET LYS ASP ARG LEU VAL GLU \ SEQRES 2 O 28 TRP ASN ASP GLN VAL GLU LYS LEU GLY LYS LYS MET GLU \ SEQRES 3 O 28 ALA ARG \ SEQRES 1 P 34 SER GLN LEU LEU ASN GLU TRP SER HIS ASN VAL ASP GLU \ SEQRES 2 P 34 LEU LEU GLU HIS ILE GLU THR ILE GLY HIS LEU ILE THR \ SEQRES 3 P 34 LYS GLU GLU ILE MET HIS GLY LEU \ SEQRES 1 Q 25 ALA THR TYR ASP SER ALA LEU GLU LEU VAL GLY GLN LEU \ SEQRES 2 Q 25 ASN LYS VAL VAL ASP GLN LEU PHE GLU LYS ALA SER \ SEQRES 1 R 26 ASN ALA GLN TYR HIS LEU LEU VAL LYS GLN GLY ASP GLY \ SEQRES 2 R 26 LEU LEU THR LYS LEU GLN LYS TYR GLY ALA ALA VAL ARG \ SEQRES 1 S 24 GLU ASP PRO GLN GLN VAL PHE ASP GLU ARG ILE LYS PHE \ SEQRES 2 S 24 ALA ASN GLN LEU HIS ASP GLU TYR LEU VAL SER \ SEQRES 1 T 17 LYS THR ASN ILE ILE GLU LYS ALA MET ASP TYR ALA ILE \ SEQRES 2 T 17 SER ILE GLU ASN \ HELIX 1 1 TYR V 230 ARG V 269 1 40 \ HELIX 2 2 LYS V 277 ALA V 298 1 22 \ HELIX 3 3 ARG U 189 ILE U 215 1 27 \ HELIX 4 4 THR U 224 LEU U 235 1 12 \ HELIX 5 5 ASN U 260 ASP U 308 1 49 \ HELIX 6 6 ASP O 361 ARG O 387 1 27 \ HELIX 7 7 GLN P 410 LEU P 442 1 33 \ HELIX 8 8 THR Q 408 SER Q 431 1 24 \ HELIX 9 9 ALA R 398 ARG R 422 1 25 \ HELIX 10 10 ASP S 456 SER S 478 1 23 \ HELIX 11 11 THR T 257 ASN T 272 1 16 \ CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 \ ORIGX1 1.000000 0.000000 0.000000 0.00000 \ ORIGX2 0.000000 1.000000 0.000000 0.00000 \ ORIGX3 0.000000 0.000000 1.000000 0.00000 \ SCALE1 1.000000 0.000000 0.000000 0.00000 \ SCALE2 0.000000 1.000000 0.000000 0.00000 \ SCALE3 0.000000 0.000000 1.000000 0.00000 \ TER 510 ALA V 298 \ TER 1253 ASP U 308 \ TER 1486 ARG O 387 \ TER 1766 LEU P 442 \ ATOM 1767 N ALA Q 407 407.945 194.098 299.441 1.00 0.00 N \ ATOM 1768 CA ALA Q 407 407.679 195.293 298.973 1.00 0.00 C \ ATOM 1769 C ALA Q 407 408.887 195.895 298.273 1.00 0.00 C \ ATOM 1770 O ALA Q 407 408.775 196.386 297.152 1.00 0.00 O \ ATOM 1771 CB ALA Q 407 407.214 196.238 300.102 1.00 0.00 C \ ATOM 1772 N THR Q 408 410.075 195.810 298.924 1.00 0.00 N \ ATOM 1773 CA THR Q 408 411.358 196.253 298.460 1.00 0.00 C \ ATOM 1774 C THR Q 408 411.666 195.730 297.080 1.00 0.00 C \ ATOM 1775 O THR Q 408 412.124 196.461 296.209 1.00 0.00 O \ ATOM 1776 CB THR Q 408 412.385 195.685 299.469 1.00 0.00 C \ ATOM 1777 OG1 THR Q 408 412.146 196.207 300.759 1.00 0.00 O \ ATOM 1778 CG2 THR Q 408 413.822 195.882 298.994 1.00 0.00 C \ ATOM 1779 N TYR Q 409 411.428 194.426 296.965 1.00 0.00 N \ ATOM 1780 CA TYR Q 409 411.677 193.693 295.741 1.00 0.00 C \ ATOM 1781 C TYR Q 409 410.790 194.223 294.625 1.00 0.00 C \ ATOM 1782 O TYR Q 409 411.245 194.398 293.496 1.00 0.00 O \ ATOM 1783 CB TYR Q 409 411.378 192.210 295.912 1.00 0.00 C \ ATOM 1784 CG TYR Q 409 411.598 191.500 294.601 1.00 0.00 C \ ATOM 1785 CD1 TYR Q 409 412.896 191.169 294.195 1.00 0.00 C \ ATOM 1786 CD2 TYR Q 409 410.507 191.173 293.792 1.00 0.00 C \ ATOM 1787 CE1 TYR Q 409 413.103 190.507 292.979 1.00 0.00 C \ ATOM 1788 CE2 TYR Q 409 410.711 190.512 292.572 1.00 0.00 C \ ATOM 1789 CZ TYR Q 409 412.009 190.179 292.167 1.00 0.00 C \ ATOM 1790 OH TYR Q 409 412.207 189.536 290.984 1.00 0.00 O \ ATOM 1791 N ASP Q 410 409.517 194.479 294.941 1.00 0.00 N \ ATOM 1792 CA ASP Q 410 408.570 194.985 293.967 1.00 0.00 C \ ATOM 1793 C ASP Q 410 408.966 196.390 293.539 1.00 0.00 C \ ATOM 1794 O ASP Q 410 409.020 196.685 292.346 1.00 0.00 O \ ATOM 1795 CB ASP Q 410 407.165 195.052 294.545 1.00 0.00 C \ ATOM 1796 CG ASP Q 410 406.603 193.636 294.665 1.00 0.00 C \ ATOM 1797 OD1 ASP Q 410 407.229 192.716 294.079 1.00 0.00 O \ ATOM 1798 OD2 ASP Q 410 405.550 193.491 295.345 1.00 0.00 O \ ATOM 1799 N SER Q 411 409.243 197.259 294.513 1.00 0.00 N \ ATOM 1800 CA SER Q 411 409.632 198.628 294.235 1.00 0.00 C \ ATOM 1801 C SER Q 411 410.775 198.652 293.230 1.00 0.00 C \ ATOM 1802 O SER Q 411 410.701 199.354 292.221 1.00 0.00 O \ ATOM 1803 CB SER Q 411 410.105 199.334 295.496 1.00 0.00 C \ ATOM 1804 OG SER Q 411 408.997 199.495 296.390 1.00 0.00 O \ ATOM 1805 N ALA Q 412 411.829 197.882 293.504 1.00 0.00 N \ ATOM 1806 CA ALA Q 412 412.980 197.818 292.623 1.00 0.00 C \ ATOM 1807 C ALA Q 412 412.539 197.471 291.209 1.00 0.00 C \ ATOM 1808 O ALA Q 412 413.033 198.049 290.244 1.00 0.00 O \ ATOM 1809 CB ALA Q 412 414.007 196.782 293.129 1.00 0.00 C \ ATOM 1810 N LEU Q 413 411.610 196.522 291.092 1.00 0.00 N \ ATOM 1811 CA LEU Q 413 411.103 196.101 289.799 1.00 0.00 C \ ATOM 1812 C LEU Q 413 410.514 197.291 289.056 1.00 0.00 C \ ATOM 1813 O LEU Q 413 410.744 197.455 287.861 1.00 0.00 O \ ATOM 1814 CB LEU Q 413 410.012 195.052 289.946 1.00 0.00 C \ ATOM 1815 CG LEU Q 413 409.495 194.662 288.566 1.00 0.00 C \ ATOM 1816 CD1 LEU Q 413 410.631 194.059 287.749 1.00 0.00 C \ ATOM 1817 CD2 LEU Q 413 408.374 193.637 288.713 1.00 0.00 C \ ATOM 1818 N GLU Q 414 409.746 198.121 289.768 1.00 0.00 N \ ATOM 1819 CA GLU Q 414 409.123 199.288 289.176 1.00 0.00 C \ ATOM 1820 C GLU Q 414 410.192 200.242 288.656 1.00 0.00 C \ ATOM 1821 O GLU Q 414 410.153 200.648 287.498 1.00 0.00 O \ ATOM 1822 CB GLU Q 414 408.278 200.041 290.196 1.00 0.00 C \ ATOM 1823 CG GLU Q 414 407.628 201.225 289.526 1.00 0.00 C \ ATOM 1824 CD GLU Q 414 406.747 201.960 290.538 1.00 0.00 C \ ATOM 1825 OE1 GLU Q 414 406.692 201.486 291.701 1.00 0.00 O \ ATOM 1826 OE2 GLU Q 414 406.143 202.988 290.134 1.00 0.00 O \ ATOM 1827 N LEU Q 415 411.147 200.597 289.519 1.00 0.00 N \ ATOM 1828 CA LEU Q 415 412.218 201.498 289.146 1.00 0.00 C \ ATOM 1829 C LEU Q 415 412.851 201.044 287.841 1.00 0.00 C \ ATOM 1830 O LEU Q 415 413.071 201.855 286.942 1.00 0.00 O \ ATOM 1831 CB LEU Q 415 413.306 201.529 290.209 1.00 0.00 C \ ATOM 1832 CG LEU Q 415 414.426 202.466 289.760 1.00 0.00 C \ ATOM 1833 CD1 LEU Q 415 413.871 203.877 289.602 1.00 0.00 C \ ATOM 1834 CD2 LEU Q 415 415.535 202.469 290.806 1.00 0.00 C \ ATOM 1835 N VAL Q 416 413.143 199.747 287.736 1.00 0.00 N \ ATOM 1836 CA VAL Q 416 413.747 199.191 286.540 1.00 0.00 C \ ATOM 1837 C VAL Q 416 412.917 199.550 285.318 1.00 0.00 C \ ATOM 1838 O VAL Q 416 413.457 199.978 284.300 1.00 0.00 O \ ATOM 1839 CB VAL Q 416 413.834 197.674 286.620 1.00 0.00 C \ ATOM 1840 CG1 VAL Q 416 414.274 197.120 285.270 1.00 0.00 C \ ATOM 1841 CG2 VAL Q 416 414.851 197.282 287.688 1.00 0.00 C \ ATOM 1842 N GLY Q 417 411.598 199.374 285.419 1.00 0.00 N \ ATOM 1843 CA GLY Q 417 410.696 199.679 284.323 1.00 0.00 C \ ATOM 1844 C GLY Q 417 410.876 201.124 283.889 1.00 0.00 C \ ATOM 1845 O GLY Q 417 411.103 201.396 282.713 1.00 0.00 O \ ATOM 1846 N GLN Q 418 410.771 202.054 284.842 1.00 0.00 N \ ATOM 1847 CA GLN Q 418 410.920 203.466 284.553 1.00 0.00 C \ ATOM 1848 C GLN Q 418 412.206 203.708 283.779 1.00 0.00 C \ ATOM 1849 O GLN Q 418 412.189 204.328 282.717 1.00 0.00 O \ ATOM 1850 CB GLN Q 418 410.983 204.287 285.832 1.00 0.00 C \ ATOM 1851 CG GLN Q 418 409.604 204.310 286.484 1.00 0.00 C \ ATOM 1852 CD GLN Q 418 409.647 205.011 287.836 1.00 0.00 C \ ATOM 1853 OE1 GLN Q 418 408.479 205.173 288.463 1.00 0.00 O \ ATOM 1854 NE2 GLN Q 418 410.716 205.398 288.302 1.00 0.00 N \ ATOM 1855 N LEU Q 419 413.329 203.217 284.312 1.00 0.00 N \ ATOM 1856 CA LEU Q 419 414.618 203.380 283.673 1.00 0.00 C \ ATOM 1857 C LEU Q 419 414.535 202.958 282.212 1.00 0.00 C \ ATOM 1858 O LEU Q 419 414.979 203.687 281.327 1.00 0.00 O \ ATOM 1859 CB LEU Q 419 415.681 202.527 284.345 1.00 0.00 C \ ATOM 1860 CG LEU Q 419 417.010 202.709 283.620 1.00 0.00 C \ ATOM 1861 CD1 LEU Q 419 417.440 204.169 283.710 1.00 0.00 C \ ATOM 1862 CD2 LEU Q 419 418.070 201.826 284.272 1.00 0.00 C \ ATOM 1863 N ASN Q 420 413.962 201.778 281.961 1.00 0.00 N \ ATOM 1864 CA ASN Q 420 413.824 201.263 280.615 1.00 0.00 C \ ATOM 1865 C ASN Q 420 413.129 202.292 279.732 1.00 0.00 C \ ATOM 1866 O ASN Q 420 413.554 202.530 278.603 1.00 0.00 O \ ATOM 1867 CB ASN Q 420 412.988 199.991 280.595 1.00 0.00 C \ ATOM 1868 CG ASN Q 420 413.776 198.815 281.155 1.00 0.00 C \ ATOM 1869 OD1 ASN Q 420 415.003 198.860 281.223 1.00 0.00 O \ ATOM 1870 ND2 ASN Q 420 413.066 197.759 281.562 1.00 0.00 N \ ATOM 1871 N LYS Q 421 412.058 202.900 280.249 1.00 0.00 N \ ATOM 1872 CA LYS Q 421 411.313 203.898 279.508 1.00 0.00 C \ ATOM 1873 C LYS Q 421 412.234 205.038 279.093 1.00 0.00 C \ ATOM 1874 O LYS Q 421 412.284 205.399 277.920 1.00 0.00 O \ ATOM 1875 CB LYS Q 421 410.192 204.484 280.353 1.00 0.00 C \ ATOM 1876 CG LYS Q 421 409.417 205.506 279.523 1.00 0.00 C \ ATOM 1877 CD LYS Q 421 408.244 206.040 280.338 1.00 0.00 C \ ATOM 1878 CE LYS Q 421 407.499 207.096 279.530 1.00 0.00 C \ ATOM 1879 NZ LYS Q 421 406.384 207.628 280.325 1.00 0.00 N \ ATOM 1880 N VAL Q 422 412.958 205.602 280.060 1.00 0.00 N \ ATOM 1881 CA VAL Q 422 413.872 206.694 279.795 1.00 0.00 C \ ATOM 1882 C VAL Q 422 414.810 206.324 278.654 1.00 0.00 C \ ATOM 1883 O VAL Q 422 414.980 207.096 277.711 1.00 0.00 O \ ATOM 1884 CB VAL Q 422 414.718 207.015 281.017 1.00 0.00 C \ ATOM 1885 CG1 VAL Q 422 415.803 208.017 280.630 1.00 0.00 C \ ATOM 1886 CG2 VAL Q 422 413.831 207.618 282.100 1.00 0.00 C \ ATOM 1887 N VAL Q 423 415.425 205.144 278.745 1.00 0.00 N \ ATOM 1888 CA VAL Q 423 416.340 204.675 277.725 1.00 0.00 C \ ATOM 1889 C VAL Q 423 415.682 204.743 276.357 1.00 0.00 C \ ATOM 1890 O VAL Q 423 416.265 205.264 275.410 1.00 0.00 O \ ATOM 1891 CB VAL Q 423 416.757 203.233 277.977 1.00 0.00 C \ ATOM 1892 CG1 VAL Q 423 417.545 202.718 276.778 1.00 0.00 C \ ATOM 1893 CG2 VAL Q 423 417.629 203.169 279.224 1.00 0.00 C \ ATOM 1894 N ASP Q 424 414.460 204.213 276.257 1.00 0.00 N \ ATOM 1895 CA ASP Q 424 413.726 204.214 275.007 1.00 0.00 C \ ATOM 1896 C ASP Q 424 413.621 205.632 274.463 1.00 0.00 C \ ATOM 1897 O ASP Q 424 413.840 205.860 273.274 1.00 0.00 O \ ATOM 1898 CB ASP Q 424 412.315 203.681 275.196 1.00 0.00 C \ ATOM 1899 CG ASP Q 424 412.370 202.170 275.405 1.00 0.00 C \ ATOM 1900 OD1 ASP Q 424 413.461 201.592 275.153 1.00 0.00 O \ ATOM 1901 OD2 ASP Q 424 411.320 201.605 275.812 1.00 0.00 O \ ATOM 1902 N GLN Q 425 413.290 206.585 275.337 1.00 0.00 N \ ATOM 1903 CA GLN Q 425 413.161 207.973 274.942 1.00 0.00 C \ ATOM 1904 C GLN Q 425 414.457 208.463 274.311 1.00 0.00 C \ ATOM 1905 O GLN Q 425 414.446 208.998 273.205 1.00 0.00 O \ ATOM 1906 CB GLN Q 425 412.860 208.860 276.141 1.00 0.00 C \ ATOM 1907 CG GLN Q 425 411.432 208.601 276.616 1.00 0.00 C \ ATOM 1908 CD GLN Q 425 411.134 209.370 277.891 1.00 0.00 C \ ATOM 1909 OE1 GLN Q 425 412.011 210.024 278.449 1.00 0.00 O \ ATOM 1910 NE2 GLN Q 425 409.882 209.293 278.357 1.00 0.00 N \ ATOM 1911 N LEU Q 426 415.573 208.278 275.018 1.00 0.00 N \ ATOM 1912 CA LEU Q 426 416.869 208.699 274.527 1.00 0.00 C \ ATOM 1913 C LEU Q 426 417.094 208.163 273.119 1.00 0.00 C \ ATOM 1914 O LEU Q 426 417.548 208.894 272.243 1.00 0.00 O \ ATOM 1915 CB LEU Q 426 417.990 208.176 275.411 1.00 0.00 C \ ATOM 1916 CG LEU Q 426 419.333 208.619 274.842 1.00 0.00 C \ ATOM 1917 CD1 LEU Q 426 419.404 210.142 274.828 1.00 0.00 C \ ATOM 1918 CD2 LEU Q 426 420.462 208.065 275.706 1.00 0.00 C \ ATOM 1919 N PHE Q 427 416.777 206.884 272.909 1.00 0.00 N \ ATOM 1920 CA PHE Q 427 416.946 206.256 271.615 1.00 0.00 C \ ATOM 1921 C PHE Q 427 416.242 207.076 270.542 1.00 0.00 C \ ATOM 1922 O PHE Q 427 416.767 207.243 269.445 1.00 0.00 O \ ATOM 1923 CB PHE Q 427 416.351 204.857 271.599 1.00 0.00 C \ ATOM 1924 CG PHE Q 427 416.437 204.143 270.270 1.00 0.00 C \ ATOM 1925 CD1 PHE Q 427 417.640 203.547 269.873 1.00 0.00 C \ ATOM 1926 CD2 PHE Q 427 415.317 204.083 269.436 1.00 0.00 C \ ATOM 1927 CE1 PHE Q 427 417.718 202.887 268.639 1.00 0.00 C \ ATOM 1928 CE2 PHE Q 427 415.394 203.423 268.203 1.00 0.00 C \ ATOM 1929 CZ PHE Q 427 416.594 202.826 267.803 1.00 0.00 C \ ATOM 1930 N GLU Q 428 415.051 207.585 270.864 1.00 0.00 N \ ATOM 1931 CA GLU Q 428 414.281 208.382 269.932 1.00 0.00 C \ ATOM 1932 C GLU Q 428 415.105 209.568 269.455 1.00 0.00 C \ ATOM 1933 O GLU Q 428 415.235 209.795 268.252 1.00 0.00 O \ ATOM 1934 CB GLU Q 428 413.015 208.919 270.576 1.00 0.00 C \ ATOM 1935 CG GLU Q 428 412.229 209.712 269.560 1.00 0.00 C \ ATOM 1936 CD GLU Q 428 410.939 210.220 270.196 1.00 0.00 C \ ATOM 1937 OE1 GLU Q 428 410.727 209.908 271.399 1.00 0.00 O \ ATOM 1938 OE2 GLU Q 428 410.175 210.915 269.473 1.00 0.00 O \ ATOM 1939 N LYS Q 429 415.663 210.329 270.402 1.00 0.00 N \ ATOM 1940 CA LYS Q 429 416.467 211.488 270.078 1.00 0.00 C \ ATOM 1941 C LYS Q 429 417.642 211.079 269.201 1.00 0.00 C \ ATOM 1942 O LYS Q 429 417.901 211.707 268.177 1.00 0.00 O \ ATOM 1943 CB LYS Q 429 417.025 212.141 271.332 1.00 0.00 C \ ATOM 1944 CG LYS Q 429 417.839 213.369 270.944 1.00 0.00 C \ ATOM 1945 CD LYS Q 429 418.334 214.069 272.207 1.00 0.00 C \ ATOM 1946 CE LYS Q 429 419.190 215.271 271.818 1.00 0.00 C \ ATOM 1947 NZ LYS Q 429 419.689 215.933 273.031 1.00 0.00 N \ ATOM 1948 N ALA Q 430 418.350 210.023 269.607 1.00 0.00 N \ ATOM 1949 CA ALA Q 430 419.493 209.535 268.861 1.00 0.00 C \ ATOM 1950 C ALA Q 430 419.117 209.334 267.398 1.00 0.00 C \ ATOM 1951 O ALA Q 430 419.857 209.732 266.503 1.00 0.00 O \ ATOM 1952 CB ALA Q 430 419.984 208.202 269.417 1.00 0.00 C \ ATOM 1953 N SER Q 431 417.958 208.713 267.160 1.00 0.00 N \ ATOM 1954 CA SER Q 431 417.488 208.461 265.814 1.00 0.00 C \ ATOM 1955 C SER Q 431 417.355 209.772 265.052 1.00 0.00 C \ ATOM 1956 O SER Q 431 417.844 209.814 263.925 1.00 0.00 O \ ATOM 1957 CB SER Q 431 416.124 207.785 265.823 1.00 0.00 C \ ATOM 1958 OG SER Q 431 415.152 208.670 266.385 1.00 0.00 O \ TER 1959 SER Q 431 \ TER 2163 ARG R 422 \ TER 2370 SER S 478 \ TER 2506 ASN T 272 \ MASTER 244 0 0 11 0 0 0 6 2498 8 0 30 \ END \ """, "3j47chainQ") cmd.hide("all") cmd.color('grey70', "3j47chainQ") cmd.show('cartoon', "3j47chainQ") cmd.center("3j47chainQ", state=0, origin=1) cmd.zoom("3j47chainQ", animate=-1) cmd.select("e3j47Q1", "c. Q & i. 407-431") cmd.color("red", "e3j47Q1") cmd.disable("e3j47Q1")